jgi.p|Nanoce1779_2|576142, mRNA_79 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576142
Unique NamemRNA_79
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1555
Alignment locationscaffold_3:211188..212742 +

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Properties
Property NameValue
TranscriptId576228
TrackFilteredModels2
ProteinId576142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:211188..212742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576142gene_79Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576142mRNA_79-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_79CDS_79Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_79 ID=mRNA_79|Name=jgi.p|Nanoce1779_2|576142|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp
AGTGAAGATGCATACGCGTGTGTGATGTTCGTGTGTGGCTTTGAAATACG
GACTTGTATCTATCTATTTTGCGTAATCTTGCGTGTGGTGTAGACGAGAG
AATCATGACCTTCCCCGGGAGGCTGAGAGTCTCGCTCCTCGCCCTCCCGA
CTTGATTCGACCTCGTTGGAATGTCCTGGACAACGGCTCAACCACACACC
TCACGACAGAGAGCAGGTCTATTTTAAACTCAAAGTGATTGGCAAACTGT
GACAATCCTTGAACGGGTATGGAGGTTTCGGTCAGTCAAGTTGCTTGATG
AAAAAAATGATGACGGGCAAGCAGCTAAAGCGTTTCTCCTTCTTTGCGAC
TGCATCCTGCACACAACTCAACCGCACAACCACCTCACATGACATGACAG
GGACAACAAACCGCGCCGAACCCATCAGCTGCAGCGGCCAGAGCGACACA
AATCATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCC
TTTTCTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCC
TCATCTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACAT
TAAGAACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCC
CGCCCGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGAC
TTCTTTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAG
TACCAGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTAC
TAGGTAGCGAGGACGAGCGCTCCCCCGTGGACGAGCTGCCGCGCCGGGGA
ACGACTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTC
CCCTCCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGA
CACGTAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCA
GGTGAGGGTGGTCGTGGCTCAACCTTTCGCGGGGGTCCTGTGCAAGACAA
AAATGGCTTCATTCCATCCACTCCTCCTCCAGCTGGTGGTACTGGTGGCG
GGCAGCAGCAGCAGCAGGCCGGAAACGGTACGCCACCACCAACGCGCGTA
TATCGCCCTCCTGGAAGTTTCGATCTGGAGCCTGCTCGTGGCAACCGGGG
TGGAGGTGGAGGAGGCAGTGCGCGTCAACGGGAGGACCAACAAGTCTTTC
GTTTGCTTCGACTATTTGGGAATCCTAACGGAATGCTATTTGGTGCTGTT
GCGCTCGCTCTAGGTACGGTTGCTTTCGGGTGGGCATGGAAGAGTGGCTC
GCTGGAGAACTCGTCTCCGAGGATGCAGGACCCTGAGGCGACTGCTTACA
TGGCCAGGAATGAGGGTTTCCCGCGGGACGTCGACGTAACGGTTACTGTG
GATGATAAAGTCGTGACTTTGTCACAGGAGGGGGGAGAGGTCGACATTCT
TTGAAGAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGA
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protein sequence of jgi.p|Nanoce1779_2|576142

>mRNA_79-protein ID=mRNA_79-protein|Name=jgi.p|Nanoce1779_2|576142|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MPPSRGVVVVLILCSLFSTTFVRAFHLPSSYSSSRTHLSLNPLSRAYNIK
NHRWRVSRSRQLHASPPAGDDSPSSKQEDDVDFFFADGFSSLLDDSTKST
SKHPKSPFEGGQTILLGSEDERSPVDELPRRGTTPPPPPISRRAMPFSSP
PSTGRSSGSSNDGGATRKKRPKRFSPPWQQEAGEGGRGSTFRGGPVQDKN
GFIPSTPPPAGGTGGGQQQQQAGNGTPPPTRVYRPPGSFDLEPARGNRGG
GGGGSARQREDQQVFRLLRLFGNPNGMLFGAVALALGTVAFGWAWKSGSL
ENSSPRMQDPEATAYMARNEGFPRDVDVTVTVDDKVVTLSQEGGEVDIL*
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mRNA from alignment at scaffold_3:211188..212742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_79 ID=mRNA_79|Name=jgi.p|Nanoce1779_2|576142|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp|location=Sequence derived from alignment at scaffold_3:211188..212742+ (Nannochloropsis oceanica)
AGTGAAGATGCATACGCGTGTGTGATGTTCGTGTGTGGCTTTGAAATACG
GACTTGTATCTATCTATTTTGCGTAATCTTGCGTGTGGTGTAGACGAGAG
AATCATGACCTTCCCCGGGAGGCTGAGAGTCTCGCTCCTCGCCCTCCCGA
CTTGATTCGACCTCGTTGGAATGTCCTGGACAACGGCTCAACCACACACC
TCACGACAGAGAGCAGGTCTATTTTAAACTCAAAGTGATTGGCAAACTGT
GACAATCCTTGAACGGGTATGGAGGTTTCGGTCAGTCAAGTTGCTTGATG
AAAAAAATGATGACGGGCAAGCAGCTAAAGCGTTTCTCCTTCTTTGCGAC
TGCATCCTGCACACAACTCAACCGCACAACCACCTCACATGACATGACAG
GGACAACAAACCGCGCCGAACCCATCAGCTGCAGCGGCCAGAGCGACACA
AATCATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCC
TTTTCTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCC
TCATCTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACAT
TAAGAACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCC
CGCCCGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGAC
TTCTTTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAG
TACCAGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTAC
TAGGTAGCGAGGACGAGCGCTCCCCCGTGGACGAGCTGCCGCGCCGGGGA
ACGACTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTC
CCCTCCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGA
CACGTAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCA
GGTGAGGGTGGTCGTGGCTCAACCTTTCGCGGGGGTCCTGTGCAAGACAA
AAATGGCTTCATTCCATCCACTCCTCCTCCAGCTGGTGGTACTGGTGGCG
GGCAGCAGCAGCAGCAGGCCGGAAACGGTACGCCACCACCAACGCGCGTA
TATCGCCCTCCTGGAAGTTTCGATCTGGAGCCTGCTCGTGGCAACCGGGG
TGGAGGTGGAGGAGGCAGTGCGCGTCAACGGGAGGACCAACAAGTCTTTC
GTTTGCTTCGACTATTTGGGAATCCTAACGGAATGCTATTTGGTGCTGTT
GCGCTCGCTCTAGGTACGGTTGCTTTCGGGTGGGCATGGAAGAGTGGCTC
GCTGGAGAACTCGTCTCCGAGGATGCAGGACCCTGAGGCGACTGCTTACA
TGGCCAGGAATGAGGGTTTCCCGCGGGACGTCGACGTAACGGTTACTGTG
GATGATAAAGTCGTGACTTTGTCACAGGAGGGGGGAGAGGTCGACATTCT
TTGAAGAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGA
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Coding sequence (CDS) from alignment at scaffold_3:211188..212742+

>mRNA_79 ID=mRNA_79|Name=jgi.p|Nanoce1779_2|576142|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_3:211188..212742+ (Nannochloropsis oceanica)
ATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCCTTTT
CTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCCTCAT
CTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACATTAAG
AACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCCCGCC
CGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGACTTCT
TTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAGTACC
AGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTACTAGG
TAGCGAGGACGAGCGCTCCCCCGTGGACGAGCTGCCGCGCCGGGGAACGA
CTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTCCCCT
CCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGACACG
TAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCAGGTG
AGGGTGGTCGTGGCTCAACCTTTCGCGGGGGTCCTGTGCAAGACAAAAAT
GGCTTCATTCCATCCACTCCTCCTCCAGCTGGTGGTACTGGTGGCGGGCA
GCAGCAGCAGCAGGCCGGAAACGGTACGCCACCACCAACGCGCGTATATC
GCCCTCCTGGAAGTTTCGATCTGGAGCCTGCTCGTGGCAACCGGGGTGGA
GGTGGAGGAGGCAGTGCGCGTCAACGGGAGGACCAACAAGTCTTTCGTTT
GCTTCGACTATTTGGGAATCCTAACGGAATGCTATTTGGTGCTGTTGCGC
TCGCTCTAGGTACGGTTGCTTTCGGGTGGGCATGGAAGAGTGGCTCGCTG
GAGAACTCGTCTCCGAGGATGCAGGACCCTGAGGCGACTGCTTACATGGC
CAGGAATGAGGGTTTCCCGCGGGACGTCGACGTAACGGTTACTGTGGATG
ATAAAGTCGTGACTTTGTCACAGGAGGGGGGAGAGGTCGACATTCTTTGA
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Synonyms
Publications