jgi.p|Nanoce1779_2|532060, mRNA_7899 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532060
Unique NamemRNA_7899
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length324
Alignment locationscaffold_22:116115..116438 +

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Properties
Property NameValue
TranscriptId532146
TrackFilteredModels2
ProteinId532060
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:116115..116438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532060gene_7899Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532060mRNA_7899-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7899CDS_7899Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7899 ID=mRNA_7899|Name=jgi.p|Nanoce1779_2|532060|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
ATGAGGACGGATGCGGCTGAGGCAGCTTTGACAGAGGATGAACGAAGATT
AATATATTCAAGGGTGTACGGTGTGGAGGTGCTTAGGAAGCGGTTGGAGT
TCCTTTTGGAATATGCCGTAAAGCAGAGCCCAATGGTAGGGAAACGCTTC
GGCCCCACCCTTGCTGATTTTGGCTTGCCCATGAACGCCACAGGTGATCC
TATGTTGGTGGTGAATCGTGCGGAATGTCTGCTGGCGTTGTACATGCTGA
CAGAGGAGGGGAAGAAGGAGGGAGGACAAGCCCCACTGGTAGAGTTTTTA
GATTCGGATCGTTTGGAGGTGTTG
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protein sequence of jgi.p|Nanoce1779_2|532060

>mRNA_7899-protein ID=mRNA_7899-protein|Name=jgi.p|Nanoce1779_2|532060|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MRTDAAEAALTEDERRLIYSRVYGVEVLRKRLEFLLEYAVKQSPMVGKRF
GPTLADFGLPMNATGDPMLVVNRAECLLALYMLTEEGKKEGGQAPLVEFL
DSDRLEVL
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mRNA from alignment at scaffold_22:116115..116438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7899 ID=mRNA_7899|Name=jgi.p|Nanoce1779_2|532060|organism=Nannochloropsis oceanica|type=mRNA|length=324bp|location=Sequence derived from alignment at scaffold_22:116115..116438+ (Nannochloropsis oceanica)
ATGAGGACGGATGCGGCTGAGGCAGCTTTGACAGAGGATGAACGAAGATT
AATATATTCAAGGGTGTACGGTGTGGAGGTGCTTAGGAAGCGGTTGGAGT
TCCTTTTGGAATATGCCGTAAAGCAGAGCCCAATGGTAGGGAAACGCTTC
GGCCCCACCCTTGCTGATTTTGGCTTGCCCATGAACGCCACAGGTGATCC
TATGTTGGTGGTGAATCGTGCGGAATGTCTGCTGGCGTTGTACATGCTGA
CAGAGGAGGGGAAGAAGGAGGGAGGACAAGCCCCACTGGTAGAGTTTTTA
GATTCGGATCGTTTGGAGGTGTTG
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Coding sequence (CDS) from alignment at scaffold_22:116115..116438+

>mRNA_7899 ID=mRNA_7899|Name=jgi.p|Nanoce1779_2|532060|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_22:116115..116438+ (Nannochloropsis oceanica)
ATGAGGACGGATGCGGCTGAGGCAGCTTTGACAGAGGATGAACGAAGATT
AATATATTCAAGGGTGTACGGTGTGGAGGTGCTTAGGAAGCGGTTGGAGT
TCCTTTTGGAATATGCCGTAAAGCAGAGCCCAATGGTAGGGAAACGCTTC
GGCCCCACCCTTGCTGATTTTGGCTTGCCCATGAACGCCACAGGTGATCC
TATGTTGGTGGTGAATCGTGCGGAATGTCTGCTGGCGTTGTACATGCTGA
CAGAGGAGGGGAAGAAGGAGGGAGGACAAGCCCCACTGGTAGAGTTTTTA
GATTCGGATCGTTTGGAGGTGTTG
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Synonyms
Publications