jgi.p|Nanoce1779_2|600441, mRNA_7897 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600441
Unique NamemRNA_7897
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_22:114625..115645 -

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Properties
Property NameValue
TranscriptId600527
TrackFilteredModels2
ProteinId600441
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:114625..115645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600441gene_7897Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600441mRNA_7897-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7897CDS_7897Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7897 ID=mRNA_7897|Name=jgi.p|Nanoce1779_2|600441|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
GAGGAGGAGGAGGAGGAGGAGGGGGGGGCGGGAGGAGGGGTATGATCGTA
TAGATGGTACAAAGGCAGCGGTTGATGTGCGCATTCTTATGCCTGCTCCC
ATGCTCTGATGTATCGCTCCGGCCACCAAGCAACAGCACAAAGCCGTGCG
TAGGCCTAGACGTCGCTGCACCATATTTTTGCTTTTGCTTATATGAATCC
TACTGTTACGCCCCAGTCCAAACACCTGTACTACCGTGGGGGCCGAGGAC
AACGAGGGAAAAGAGGGAGAGAAGACGACGGCCTAGCACTCGATCGGTCT
ATGCTGCCATCCAAGGCTTTGCCCACGCGTCTAAGCTTTTCTTCTCGCTG
ACTGTGTCCATGATACAGGATATGTGTTTAGGTTGGAGAGTGATTGAGTG
GGTGGTGGTCTCTATGTGAGGGCACGCACGTAAGAGGTCATGACGCATGC
ATTTGGGCCATGGAGTGATGAAAAAGCCAAGGAGTGAAAAGGTGCATCTG
CAGCATGATCTCTTTCCTGATGGTGGATGCTGGTTCTTGTGATTGCCTGG
AACGCAGCTGCGTTAGAGGTGGTACCAAGAATAGAAGAAGAAAGGTGGCC
AACGCAATGATCTTTCTTGGCCTGCCCCTTGCTCCAACTAGATCGTCAAC
CCTCACCCCATGAGACAACGCCCGCCATGCATCCACTGCTGAGCCTTGTC
TCTGTGTCGCAGTATACGCTTGGTGTCCTTTGCATCGGCGAGGGAAAAAC
ACGTTGCTGCATCAGCGCCTTGTCTCTCGCACCGGGTGGGGAGGGCATGT
TTGCCTGCGTGTGCGACACCGAGGAGT
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protein sequence of jgi.p|Nanoce1779_2|600441

>mRNA_7897-protein ID=mRNA_7897-protein|Name=jgi.p|Nanoce1779_2|600441|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MVQRQRLMCAFLCLLPCSDVSLRPPSNSTKPCVGLDVAAPYFCFCLYESY
CYAPVQTPVLPWGPRTTREKRERRRRPSTRSVYAAIQGFAHASKLFFSLT
VSMIQDMCLGWRVIEWVVVSM*
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mRNA from alignment at scaffold_22:114625..115645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7897 ID=mRNA_7897|Name=jgi.p|Nanoce1779_2|600441|organism=Nannochloropsis oceanica|type=mRNA|length=1021bp|location=Sequence derived from alignment at scaffold_22:114625..115645- (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGGGGGGGCGGGAGGAGGGGTATGATCGTA
TAGATGGTACAAAGGCAGCGGTTGATGTGCGCATTCTTATGCCTGCTCCT
GCGAAAATAAGAGAGGTAGAGGGACGGAGGGACGGAAGGACGGAGAGGTG
AGTGGATTGTGGATGCATGAGGCCAAGTGAAAGTAGCTACAGAGGATGAT
GATTCGCACACTGCCTTTCCTGCAGATACTACTCTGTTCGATCCTGGACG
TCCCATCGTCACAATCGATGCGAAATCTTACACCAAACGTACCCATGCTC
TGATGTATCGCTCCGGCCACCAAGCAACAGCACAAAGCCGTGCGTAGGCC
TAGACGTCGCTGCACCATATTTTTGCTTTTGCTTATATGAATCCTACTGT
TACGCCCCAGTCCAAACACCTGTACTACCGTGGGGGCCGAGGACAACGAG
GGAAAAGAGGGAGAGAAGACGACGGCCTAGCACTCGATCGGTCTATGCTG
CCATCCAAGGCTTTGCCCACGCGTCTAAGCTTTTCTTCTCGCTGACTGTG
TCCATGATACAGGATATGTGTTTAGGTTGGAGAGTGATTGAGTGGGTGGT
GGTCTCTATGTGAGGGCACGCACGTAAGAGGTCATGACGCATGCATTTGG
GCCATGGAGTGATGAAAAAGCCAAGGAGTGAAAAGGTGCATCTGCAGCAT
GATCTCTTTCCTGATGGTGGATGCTGGTTCTTGTGATTGCCTGGAACGCA
GCTGCGTTAGAGGTGGTACCAAGAATAGAAGAAGAAAGGTGGCCAACGCA
ATGATCTTTCTTGGCCTGCCCCTTGCTCCAACTAGATCGTCAACCCTCAC
CCCATGAGACAACGCCCGCCATGCATCCACTGCTGAGCCTTGTCTCTGTG
TCGCAGTATACGCTTGGTGTCCTTTGCATCGGCGAGGGAAAAACACGTTG
CTGCATCAGCGCCTTGTCTCTCGCACCGGGTGGGGAGGGCATGTTTGCCT
GCGTGTGCGACACCGAGGAGT
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Coding sequence (CDS) from alignment at scaffold_22:114625..115645-

>mRNA_7897 ID=mRNA_7897|Name=jgi.p|Nanoce1779_2|600441|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_22:114625..115645- (Nannochloropsis oceanica)
CCATGCTCTGATGTATCGCTCCGGCCACCAAGCAACAGCACAAAGCCGTG
CGTAGGCCTAGACGTCGCTGCACCATATTTTTGCTTTTGCTTATATGAAT
CCTACTGTTACGCCCCAGTCCAAACACCTGTACTACCGTGGGGGCCGAGG
ACAACGAGGGAAAAGAGGGAGAGAAGACGACGGCCTAGCACTCGATCGGT
CTATGCTGCCATCCAAGGCTTTGCCCACGCGTCTAAGCTTTTCTTCTCGC
TGACTGTGTCCATGATACAGGATATGTGTTTAGGTTGGAGAGTGATTGAG
TGGGTGGTGGTCTCTATGTGAATGGTACAAAGGCAGCGGTTGATGTGCGC
ATTCTTATGCCTGCTCCCATGCTCTGATGTATCGCTCCGGCCACCAAGCA
ACAGCACAAAGCCGTGCGTAGGCCTAGACGTCGCTGCACCATATTTTTGC
TTTTGCTTATATGAATCCTACTGTTACGCCCCAGTCCAAACACCTGTACT
ACCGTGGGGGCCGAGGACAACGAGGGAAAAGAGGGAGAGAAGACGACGGC
CTAGCACTCGATCGGTCTATGCTGCCATCCAAGGCTTTGCCCACGCGTCT
AAGCTTTTCTTCTCGCTGACTGTGTCCATGATACAGGATATGTGTTTAGG
TTGGAGAGTGATTGAGTGGGTGGTGGTCTCTATGTGAATGGTACAAAGGC
AGCGGTTGATGTGCGCATTCTTATGCCTGCTC
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Synonyms
Publications