jgi.p|Nanoce1779_2|175038, mRNA_7896 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|175038
Unique Name	mRNA_7896
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1797
Alignment location	scaffold_22:112149..113945 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	175124
Track	FilteredModels2
ProteinId	175038

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:112149..113945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|175038	gene_7896	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|175038	mRNA_7896-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7896	CDS_7896	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:112149..113945+
coding sequence from alignment at scaffold_22:112149..113945+

mRNA sequence

>mRNA_7896 ID=mRNA_7896|Name=jgi.p|Nanoce1779_2|175038|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
GGAAGAACGGCATGTGGGGCAAGGCGAGAGCGAGGAAAGGGCATCTGTCC
CCGAGGGCATAAAATATTATTTTCCTTCGGCCGATTGCGCGAGTCCAGCA
TCACCACCCGACCTCCCCACCCCCCATGTGCCTTTCCCACCGCACACCGT
CAAACGTACACCAAAACTTCACTCACAATCCAGTACACTTCTACAGATCA
TACATAGGTTTCTTCCCTCTGACGGCGCGACTTCGCTTCCTGCACTGTTC
TTCCTGTCTTTCTTCTTTCACTAGTACACCTCCATCCACTCAGTACACCC
GCCATCGCACAAGCCATGCTGGAAATCTACCTCTCCCTCCTCCGCAACGG
CGCCAGCGTTATCAAGGATTTCCTTCCCTCTGGCCACGCCTTGCTGATCC
CACCTGCCACCATCGCCCCGGCCGTCCTCCCTTTCCTCCCCCACTCCCAC
CTGGCTGGCATCCCAGTCATCGACCTCTTTATTGCTCCTCTCCAACTCGT
CGCGGTCTTGTACGGTGGGATCGGCGGTCTTTCCGACTTGGTTGATGCCT
TGCAAAGATGGCGGCGCTCCAAGGCGTGGGCGAGGGGCGCGATGAATATG
GAGAGTCATATGTATGAAAGAGAGGTGCTGGACATGCGTGAACGGCTGCA
AGCCGAGGTCGAGGAGGCCTGGGGAAGCATAACCTGGGCTGTGCTCAAGA
TCACGTTTGGCGTGTGCTTTTGGTTCTTCTTTTTGAGCAGTCTGAAAAAT
GTGGAAGAGGAGGCAATCCAATGGACCTTGTTGGCGATGGAGGTGGCGGC
GTTGATATGCCTGTACAAAGGAGGGCTTAGCCTCCTGACCCGTCGTGCGA
AAGCACTGTATCTTCTCGGTATTACACCTAATGACCTGCTCGAGATGGAC
CAAATCGACGGAAAACTGGTTGAATTCGCGGATAAACGCCTCGGATTCAC
CTGGGAAGATCAAGTGAGCTACCATCCCAATGCCTTGTTCGCCGACATTG
AGCATCTCTCTCGGGCTTATGCCCGACTGGCGTTAATGCTCCAAAAGGCC
ACCGAGGAACATGACGAAGACGCCCAGGCAGATCTCAAGGAGATGTTACA
CCGTATCCATACACATGGCCGACAGCAGCTGTCCTTGTGCTGGGTGGATG
CTGGCATCTTCCTCATGGATGCTATTGCCTTCTTGGCCTATGTCTTCTTC
CCACTCGTCTGGTTCTACCCTGACGAAGCCCTGTACCACAGTCTTCTTAC
CGGCCCATATTTAAAATATCCAGGCCATGACGTTGTCTTGACCACGGGGG
CGATCATTGGGGATGTGATGTGGACGTTGCAACCTGCCTGCATGCTCGCC
TCCACGGTCATTCGGAAGGTGGTCGAGGAGAAGGTTGTCGGGCCGGAACC
TTCGCATGTCTTGCGGTTGCCACCACTTAAGAGGAAGGGGAAGGCAAAGG
CGTTGGGGGCGACCACAACGACGGCGAGGGAGCGATCACCAGTCGCAGGA
ACGGCGGTCGTGGCGTCGGCAAGGAGGAGGAGGGGGGCTGTTGAGAAGGA
TGAGGATGAGGAGGAGGAGGAGGAGAAGTTTGGGAGGAAGGAAGGGAGAA
ATGGTAGGGGGTCGACGCAAGGAAAAGTGGCTGCAAGGCGACGAACAGGC
ATGGCAGGCAAGAAGGGCAACAGCAGCAGTAGCAGCGTCGAGCAGACGGT
GGGCCCGTCCGTCGTTACACGCGCGAGTTCTCGGTTGCGCATGCAGGGGA
AAGGAGGCAAGACCAACTAAGCGGCTACGATTGAGGGGGTAGGAGAG

protein sequence of jgi.p|Nanoce1779_2|175038

>mRNA_7896-protein ID=mRNA_7896-protein|Name=jgi.p|Nanoce1779_2|175038|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MLEIYLSLLRNGASVIKDFLPSGHALLIPPATIAPAVLPFLPHSHLAGIP
VIDLFIAPLQLVAVLYGGIGGLSDLVDALQRWRRSKAWARGAMNMESHMY
EREVLDMRERLQAEVEEAWGSITWAVLKITFGVCFWFFFLSSLKNVEEEA
IQWTLLAMEVAALICLYKGGLSLLTRRAKALYLLGITPNDLLEMDQIDGK
LVEFADKRLGFTWEDQVSYHPNALFADIEHLSRAYARLALMLQKATEEHD
EDAQADLKEMLHRIHTHGRQQLSLCWVDAGIFLMDAIAFLAYVFFPLVWF
YPDEALYHSLLTGPYLKYPGHDVVLTTGAIIGDVMWTLQPACMLASTVIR
KVVEEKVVGPEPSHVLRLPPLKRKGKAKALGATTTTARERSPVAGTAVVA
SARRRRGAVEKDEDEEEEEEKFGRKEGRNGRGSTQGKVAARRRTGMAGKK
GNSSSSSVEQTVGPSVVTRASSRLRMQGKGGKTN*

mRNA from alignment at scaffold_22:112149..113945+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7896 ID=mRNA_7896|Name=jgi.p|Nanoce1779_2|175038|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_22:112149..113945+ (Nannochloropsis oceanica)
GGAAGAACGGCATGTGGGGCAAGGCGAGAGCGAGGAAAGGGCATCTGTCC
CCGAGGGCATAAAATATTATTTTCCTTCGGCCGATTGCGCGAGTCCAGCA
TCACCACCCGACCTCCCCACCCCCCATGTGCCTTTCCCACCGCACACCGT
CAAACGTACACCAAAACTTCACTCACAATCCAGTACACTTCTACAGATCA
TACATAGGTTTCTTCCCTCTGACGGCGCGACTTCGCTTCCTGCACTGTTC
TTCCTGTCTTTCTTCTTTCACTAGTACACCTCCATCCACTCAGTACACCC
GCCATCGCACAAGCCATGCTGGAAATCTACCTCTCCCTCCTCCGCAACGG
CGCCAGCGTTATCAAGGATTTCCTTCCCTCTGGCCACGCCTTGCTGATCC
CACCTGCCACCATCGCCCCGGCCGTCCTCCCTTTCCTCCCCCACTCCCAC
CTGGCTGGCATCCCAGTCATCGACCTCTTTATTGCTCCTCTCCAACTCGT
CGCGGTCTTGTACGGTGGGATCGGCGGTCTTTCCGACTTGGTTGATGCCT
TGCAAAGATGGCGGCGCTCCAAGGCGTGGGCGAGGGGCGCGATGAATATG
GAGAGTCATATGTATGAAAGAGAGGTGCTGGACATGCGTGAACGGCTGCA
AGCCGAGGTCGAGGAGGCCTGGGGAAGCATAACCTGGGCTGTGCTCAAGA
TCACGTTTGGCGTGTGCTTTTGGTTCTTCTTTTTGAGCAGTCTGAAAAAT
GTGGAAGAGGAGGCAATCCAATGGACCTTGTTGGCGATGGAGGTGGCGGC
GTTGATATGCCTGTACAAAGGAGGGCTTAGCCTCCTGACCCGTCGTGCGA
AAGCACTGTATCTTCTCGGTATTACACCTAATGACCTGCTCGAGATGGAC
CAAATCGACGGAAAACTGGTTGAATTCGCGGATAAACGCCTCGGATTCAC
CTGGGAAGATCAAGTGAGCTACCATCCCAATGCCTTGTTCGCCGACATTG
AGCATCTCTCTCGGGCTTATGCCCGACTGGCGTTAATGCTCCAAAAGGCC
ACCGAGGAACATGACGAAGACGCCCAGGCAGATCTCAAGGAGATGTTACA
CCGTATCCATACACATGGCCGACAGCAGCTGTCCTTGTGCTGGGTGGATG
CTGGCATCTTCCTCATGGATGCTATTGCCTTCTTGGCCTATGTCTTCTTC
CCACTCGTCTGGTTCTACCCTGACGAAGCCCTGTACCACAGTCTTCTTAC
CGGCCCATATTTAAAATATCCAGGCCATGACGTTGTCTTGACCACGGGGG
CGATCATTGGGGATGTGATGTGGACGTTGCAACCTGCCTGCATGCTCGCC
TCCACGGTCATTCGGAAGGTGGTCGAGGAGAAGGTTGTCGGGCCGGAACC
TTCGCATGTCTTGCGGTTGCCACCACTTAAGAGGAAGGGGAAGGCAAAGG
CGTTGGGGGCGACCACAACGACGGCGAGGGAGCGATCACCAGTCGCAGGA
ACGGCGGTCGTGGCGTCGGCAAGGAGGAGGAGGGGGGCTGTTGAGAAGGA
TGAGGATGAGGAGGAGGAGGAGGAGAAGTTTGGGAGGAAGGAAGGGAGAA
ATGGTAGGGGGTCGACGCAAGGAAAAGTGGCTGCAAGGCGACGAACAGGC
ATGGCAGGCAAGAAGGGCAACAGCAGCAGTAGCAGCGTCGAGCAGACGGT
GGGCCCGTCCGTCGTTACACGCGCGAGTTCTCGGTTGCGCATGCAGGGGA
AAGGAGGCAAGACCAACTAAGCGGCTACGATTGAGGGGGTAGGAGAG

Coding sequence (CDS) from alignment at scaffold_22:112149..113945+

>mRNA_7896 ID=mRNA_7896|Name=jgi.p|Nanoce1779_2|175038|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at scaffold_22:112149..113945+ (Nannochloropsis oceanica)
ATGCTGGAAATCTACCTCTCCCTCCTCCGCAACGGCGCCAGCGTTATCAA
GGATTTCCTTCCCTCTGGCCACGCCTTGCTGATCCCACCTGCCACCATCG
CCCCGGCCGTCCTCCCTTTCCTCCCCCACTCCCACCTGGCTGGCATCCCA
GTCATCGACCTCTTTATTGCTCCTCTCCAACTCGTCGCGGTCTTGTACGG
TGGGATCGGCGGTCTTTCCGACTTGGTTGATGCCTTGCAAAGATGGCGGC
GCTCCAAGGCGTGGGCGAGGGGCGCGATGAATATGGAGAGTCATATGTAT
GAAAGAGAGGTGCTGGACATGCGTGAACGGCTGCAAGCCGAGGTCGAGGA
GGCCTGGGGAAGCATAACCTGGGCTGTGCTCAAGATCACGTTTGGCGTGT
GCTTTTGGTTCTTCTTTTTGAGCAGTCTGAAAAATGTGGAAGAGGAGGCA
ATCCAATGGACCTTGTTGGCGATGGAGGTGGCGGCGTTGATATGCCTGTA
CAAAGGAGGGCTTAGCCTCCTGACCCGTCGTGCGAAAGCACTGTATCTTC
TCGGTATTACACCTAATGACCTGCTCGAGATGGACCAAATCGACGGAAAA
CTGGTTGAATTCGCGGATAAACGCCTCGGATTCACCTGGGAAGATCAAGT
GAGCTACCATCCCAATGCCTTGTTCGCCGACATTGAGCATCTCTCTCGGG
CTTATGCCCGACTGGCGTTAATGCTCCAAAAGGCCACCGAGGAACATGAC
GAAGACGCCCAGGCAGATCTCAAGGAGATGTTACACCGTATCCATACACA
TGGCCGACAGCAGCTGTCCTTGTGCTGGGTGGATGCTGGCATCTTCCTCA
TGGATGCTATTGCCTTCTTGGCCTATGTCTTCTTCCCACTCGTCTGGTTC
TACCCTGACGAAGCCCTGTACCACAGTCTTCTTACCGGCCCATATTTAAA
ATATCCAGGCCATGACGTTGTCTTGACCACGGGGGCGATCATTGGGGATG
TGATGTGGACGTTGCAACCTGCCTGCATGCTCGCCTCCACGGTCATTCGG
AAGGTGGTCGAGGAGAAGGTTGTCGGGCCGGAACCTTCGCATGTCTTGCG
GTTGCCACCACTTAAGAGGAAGGGGAAGGCAAAGGCGTTGGGGGCGACCA
CAACGACGGCGAGGGAGCGATCACCAGTCGCAGGAACGGCGGTCGTGGCG
TCGGCAAGGAGGAGGAGGGGGGCTGTTGAGAAGGATGAGGATGAGGAGGA
GGAGGAGGAGAAGTTTGGGAGGAAGGAAGGGAGAAATGGTAGGGGGTCGA
CGCAAGGAAAAGTGGCTGCAAGGCGACGAACAGGCATGGCAGGCAAGAAG
GGCAACAGCAGCAGTAGCAGCGTCGAGCAGACGGTGGGCCCGTCCGTCGT
TACACGCGCGAGTTCTCGGTTGCGCATGCAGGGGAAAGGAGGCAAGACCA
ACTAA

Synonyms

Publications