jgi.p|Nanoce1779_2|600434, mRNA_7895 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600434
Unique NamemRNA_7895
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length355
Alignment locationscaffold_22:111519..111873 +

Link to JBrowse

Properties
Property NameValue
TranscriptId600520
TrackFilteredModels2
ProteinId600434
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:111519..111873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600434gene_7895Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600434mRNA_7895-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7895CDS_7895Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7895 ID=mRNA_7895|Name=jgi.p|Nanoce1779_2|600434|organism=Nannochloropsis oceanica|type=mRNA|length=355bp
CGAGCCAAAGGGAAGGATAAAGGCTACGGCGGTAGCCCCCCCCACCATTT
GAGCCTGGGTGCAATGGGTGATGCCATCCTCCCCTCCCTCTTCCCCCCCC
TCCCCCTCCTCCTCCTCCTCCTCCACTGCATCCCGCCGTACCACCATGTA
GAAAGAGGAATGTCTCCTCTGCCGCCGCGGCCGACTGCATGCTTCGACTT
GATTCGGTGGTGGTGCTGCTGGTGTCGGAACTTTCTTTGCTTGGTTAGAG
GCCTCTTCGCTTGGGTGTCGCTCGTTCTTCTCCAGGGGCTCACGGGGGCC
AGCCTGTTTGTCTAGAGCAACGACGCAAGATAAAACGCAGGATGCTGGTC
TTTTG
back to top

protein sequence of jgi.p|Nanoce1779_2|600434

>mRNA_7895-protein ID=mRNA_7895-protein|Name=jgi.p|Nanoce1779_2|600434|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MGDAILPSLFPPLPLLLLLLHCIPPYHHVERGMSPLPPRPTACFDLIRWW
CCWCRNFLCLVRGLFAWVSLVLLQGLTGASLFV*
back to top

mRNA from alignment at scaffold_22:111519..111873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7895 ID=mRNA_7895|Name=jgi.p|Nanoce1779_2|600434|organism=Nannochloropsis oceanica|type=mRNA|length=355bp|location=Sequence derived from alignment at scaffold_22:111519..111873+ (Nannochloropsis oceanica)
CGAGCCAAAGGGAAGGATAAAGGCTACGGCGGTAGCCCCCCCCACCATTT
GAGCCTGGGTGCAATGGGTGATGCCATCCTCCCCTCCCTCTTCCCCCCCC
TCCCCCTCCTCCTCCTCCTCCTCCACTGCATCCCGCCGTACCACCATGTA
GAAAGAGGAATGTCTCCTCTGCCGCCGCGGCCGACTGCATGCTTCGACTT
GATTCGGTGGTGGTGCTGCTGGTGTCGGAACTTTCTTTGCTTGGTTAGAG
GCCTCTTCGCTTGGGTGTCGCTCGTTCTTCTCCAGGGGCTCACGGGGGCC
AGCCTGTTTGTCTAGAGCAACGACGCAAGATAAAACGCAGGATGCTGGTC
TTTTG
back to top

Coding sequence (CDS) from alignment at scaffold_22:111519..111873+

>mRNA_7895 ID=mRNA_7895|Name=jgi.p|Nanoce1779_2|600434|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_22:111519..111873+ (Nannochloropsis oceanica)
ATGGGTGATGCCATCCTCCCCTCCCTCTTCCCCCCCCTCCCCCTCCTCCT
CCTCCTCCTCCACTGCATCCCGCCGTACCACCATGTAGAAAGAGGAATGT
CTCCTCTGCCGCCGCGGCCGACTGCATGCTTCGACTTGATTCGGTGGTGG
TGCTGCTGGTGTCGGAACTTTCTTTGCTTGGTTAGAGGCCTCTTCGCTTG
GGTGTCGCTCGTTCTTCTCCAGGGGCTCACGGGGGCCAGCCTGTTTGTCT
AG
back to top
Synonyms
Publications