jgi.p|Nanoce1779_2|568201, mRNA_7890 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568201
Unique NamemRNA_7890
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length363
Alignment locationscaffold_22:97434..97796 +

Link to JBrowse

Properties
Property NameValue
TranscriptId568287
TrackFilteredModels2
ProteinId568201
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:97434..97796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568201gene_7890Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568201mRNA_7890-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7890CDS_7890Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7890 ID=mRNA_7890|Name=jgi.p|Nanoce1779_2|568201|organism=Nannochloropsis oceanica|type=mRNA|length=363bp
ATGGGCGGTGTCGGACGGCAGCTTGGAACCCAGGGCAGAAAGATGAAAAA
GATGAACCAACTAGGCCAGGTGGAAGGCGCGCAGCTTCATATCACGATCT
TGTCAGCCTTCTCGGTCTTAATGATGGTCGTGGTCATCTTATTGAGTGGC
TCAGGCTTGGACATGATGACGGAGTGTCAGGTTGTGGGGCTTGTGTTGTG
GATGGGGAAGTGGAGGGGGGACCGTGAGCGACGTGCGCGGATTCAAAACG
GTGCGGCGGTGGCGACGCGCCCGCCTGCAGCACAAGCAGCCCGCCCGCAG
CATGAGCAAAGCACCATTGTCAGCTGGGCTGCGCGTGATCACATTTTGGT
TTTCCACAAATGA
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protein sequence of jgi.p|Nanoce1779_2|568201

>mRNA_7890-protein ID=mRNA_7890-protein|Name=jgi.p|Nanoce1779_2|568201|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MGGVGRQLGTQGRKMKKMNQLGQVEGAQLHITILSAFSVLMMVVVILLSG
SGLDMMTECQVVGLVLWMGKWRGDRERRARIQNGAAVATRPPAAQAARPQ
HEQSTIVSWAARDHILVFHK*
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mRNA from alignment at scaffold_22:97434..97796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7890 ID=mRNA_7890|Name=jgi.p|Nanoce1779_2|568201|organism=Nannochloropsis oceanica|type=mRNA|length=363bp|location=Sequence derived from alignment at scaffold_22:97434..97796+ (Nannochloropsis oceanica)
ATGGGCGGTGTCGGACGGCAGCTTGGAACCCAGGGCAGAAAGATGAAAAA
GATGAACCAACTAGGCCAGGTGGAAGGCGCGCAGCTTCATATCACGATCT
TGTCAGCCTTCTCGGTCTTAATGATGGTCGTGGTCATCTTATTGAGTGGC
TCAGGCTTGGACATGATGACGGAGTGTCAGGTTGTGGGGCTTGTGTTGTG
GATGGGGAAGTGGAGGGGGGACCGTGAGCGACGTGCGCGGATTCAAAACG
GTGCGGCGGTGGCGACGCGCCCGCCTGCAGCACAAGCAGCCCGCCCGCAG
CATGAGCAAAGCACCATTGTCAGCTGGGCTGCGCGTGATCACATTTTGGT
TTTCCACAAATGA
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Coding sequence (CDS) from alignment at scaffold_22:97434..97796+

>mRNA_7890 ID=mRNA_7890|Name=jgi.p|Nanoce1779_2|568201|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_22:97434..97796+ (Nannochloropsis oceanica)
ATGGGCGGTGTCGGACGGCAGCTTGGAACCCAGGGCAGAAAGATGAAAAA
GATGAACCAACTAGGCCAGGTGGAAGGCGCGCAGCTTCATATCACGATCT
TGTCAGCCTTCTCGGTCTTAATGATGGTCGTGGTCATCTTATTGAGTGGC
TCAGGCTTGGACATGATGACGGAGTGTCAGGTTGTGGGGCTTGTGTTGTG
GATGGGGAAGTGGAGGGGGGACCGTGAGCGACGTGCGCGGATTCAAAACG
GTGCGGCGGTGGCGACGCGCCCGCCTGCAGCACAAGCAGCCCGCCCGCAG
CATGAGCAAAGCACCATTGTCAGCTGGGCTGCGCGTGATCACATTTTGGT
TTTCCACAAATGA
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Synonyms
Publications