jgi.p|Nanoce1779_2|174870, mRNA_7889 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|174870
Unique Name	mRNA_7889
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1489
Alignment location	scaffold_22:93452..95533 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	174956
Track	FilteredModels2
ProteinId	174870

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:93452..95533 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|174870	gene_7889	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|174870	mRNA_7889-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7889	CDS_7889	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:93452..95533+
coding sequence from alignment at scaffold_22:93452..95533+

mRNA sequence

>mRNA_7889 ID=mRNA_7889|Name=jgi.p|Nanoce1779_2|174870|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp
GGCGTGATCAGGCCGAGGAAAGAAAAGGAGGACGAGGACAAGTGTTGCCT
GAGCTATAAACCTGTATGCTCATACTGGTGGTGTGCTCGATGTTGGTGTG
GTAAGGTTTGGCGTTTGCATGTCTTGTTGTGCGGCCGCTGGCGCAACGAG
AGCGGCAAGAAGCCCTGTTGCACTGCAACTTCTCACTCTATCCTATATAC
ACACAGCAATGCCAACGCCGGACACATCCCCACCAAGAAGAAGATTGCAA
AATAGTCTCCGCCTTATCCTCCTCAGCCTGACGACGATCAGTAACCTGGC
CTTCCTCTTGCCCTCCTCAGCGCGCTCCCCCAGCCTCCTCCCTCGGCCCA
CCACACGTTTATCGGTTGACTTCAACACGCTACCTCGCCCTGATGCTGCC
ACTGCTCTTGCTGCGGCTACAGGGACAGGCAATGACAATCTACCGGACAG
ACTGCCTATTGTGGCCATAATTGGCCACCCCGGCTCGGGTCAGACAACTT
TTGCCAGTATGCTCGCTGAAGACTACCCCAAACTTCACTACATCTCCACC
AGCAGCGAACCAGGTCTCCTCAATGAAGTCCGCACAATTCTTCGACAAGC
AGCAGAAAAAGCAGCAGCAGCACAAGCAGACCCCTCCCTCCCTCCTTCCC
TCCCCCTCTCCCTTCCCGAAGCCATGTCCCATGCCTTGGCCTCACGGATT
CGCTCGGTCCTTGCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTTCCGC
CATCCTTCTGGACGGGTGGCCCCGTTCGATGACCGATCTAAAAACTTTGG
AGGATGGGGGGAGGGAGGGAGGGGAGGCAAGGTCGGTGTATGTGGATGCC
TGTGTCTTTCTTGATAGTGGCGAAGAGAAAGAGGACCGGGAGCTGGTCTT
GCTGAGGGAGGGGTTGAAGGAGGGGGGAAGGGAGAGAGGGAGGGCGTGGG
TGATACCTAATGACGGGGAGGTGGGCGAGGTTTACAAGAAGGTGAAGGAG
GTCTTGGCGCCTGTATTGGCGAAGGGCGGGTTGAGGGAGGGAGGGAAGGA
GGGAGGGAAGGAGGTTGTACAATCCGAATCACCTGCAGAGGCAGCAGGAG
TAGCAGCAGCAGCAGCAGCAGCAATAAGAACAAAAGCAGCAGCAGCAGCA
GCAACAGCAGCAACAGCAACAGCAGCTGCAGCAGCAACAGCCAAAACAAA
ACCCGCCTCCTCTTCCTCCCTCCTCCCATTCGGAGGCCTCCTTCTTCCCC
CTCCCCTCTCCCTCGCTCTCCTCCGTGCCGCTCCTCCTCCCATTTCCTAC
CTTGCCAATTAATGATTGTGTGTCCCACGCGTGAATTAGCCGTCCAAGTC
GGTCGAGTCGTTTCGGACCTTCTGAGAGGGAAGGGGGTGGATGCGGAATC
TGCGGGCCTTGGTGATAGATGAGGTGGACCGGTGTTTGTCGCCCCTGGGG
CAATATGCAACGTTGAAGGAGAAGAAGCAGAAGGGACGG

protein sequence of jgi.p|Nanoce1779_2|174870

>mRNA_7889-protein ID=mRNA_7889-protein|Name=jgi.p|Nanoce1779_2|174870|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MSCCAAAGATRAARSPVALQLLTLSYIHTAMPTPDTSPPRRRLQNSLRLI
LLSLTTISNLAFLLPSSARSPSLLPRPTTRLSVDFNTLPRPDAATALAAA
TGTGNDNLPDRLPIVAIIGHPGSGQTTFASMLAEDYPKLHYISTSSEPGL
LNEVRTILRQAAEKAAAAQADPSLPPSLPLSLPEAMSHALASRIRSVLAL
PPSLPPPLPSAILLDGWPRSMTDLKTLEDGGREGGEARSVYVDACVFLDS
GEEKEDRELVLLREGLKEGGRERGRAWVIPNDGEVGEVYKKVKEVLAPVL
AKGGLREGGKEGGKEVVQSESPAEAAGVAAAAAAAIRTKAAAAAATAATA
TAAAAATAKTKPASSSSLLPFGGLLLPPPLSLALLRAAPPPISYLAN*

mRNA from alignment at scaffold_22:93452..95533+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7889 ID=mRNA_7889|Name=jgi.p|Nanoce1779_2|174870|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp|location=Sequence derived from alignment at scaffold_22:93452..95533+ (Nannochloropsis oceanica)
GGCGTGATCAGGCCGAGGAAAGAAAAGGAGGACGAGGACAAGTGTTGCCT
GAGCTATAAACCTGTATGCTCATACTGGTGGTGTGCTCGATGTTGGTGTG
GTAAGGTTTGGCGTTTGCATGTCTTGTTGTGCGGCCGCTGGCGCAACGAG
AGCGGCAAGAAGCCCTGTTGCACTGCAACTTCTCACTCTATCCTATATAC
ACACAGCAATGCCAACGCCGGACACATCCCCACCAAGAAGAAGATTGCAA
AATAGTCTCCGCCTTATCCTCCTCAGCCTGACGACGATCAGTAACCTGGC
CTTCCTCTTGCCCTCCTCAGCGCGCTCCCCCAGCCTCCTCCCTCGGCCCA
CCACACGTTTATCGGTTGACTTCAACACGCTACCTCGCCCTGATGCTGCC
ACTGCTCTTGCTGCGGCTACAGGGACAGGCAATGACAATCTACCGGACAG
ACTGCCTATTGTGGCCATAATTGGCCACCCCGGCTCGGGTCAGACAACTT
TTGCCAGGTATTTTTTGCAGGCCCGAGATAAGAAAGCCCCCCGCTCCCTC
CCTCCCTCCCCCCCCTCCCTCCATCTGGGCATATATTTGTATCCATTGTC
GACATATTTAATGCGTAACACAGGTAGATGTCATCGATACTTTGCTTGTT
TATGCTCTGCACTGCTCCACTTACCATCGTCATCCTCCCCTTCCTCCCTC
CCTCCCTCCCTCCCTCCCTGCCCCTCAGTATGCTCGCTGAAGACTACCCC
AAACTTCACTACATCTCCACCAGCAGCGAACCAGGTCTCCTCAATGAAGT
CCGCACAATTCTTCGACAAGCAGCAGAAAAAGCAGCAGCAGCACAAGCAG
ACCCCTCCCTCCCTCCTTCCCTCCCCCTCTCCCTTCCCGAAGCCATGTCC
CATGCCTTGGCCTCACGGATTCGCTCGGTCCTTGCCCTCCCTCCCTCCCT
CCCTCCCCCCCTCCCTTCCGCCATCCTTCTGGACGGGTGGCCCCGTTCGA
TGACCGATCTAAAAACTTTGGAGGATGGGGGGAGGGAGGGAGGGGAGGCA
AGGTCGGTGTATGTGGATGCCTGTGTCTTTCTTGATAGTGGCGAAGAGAA
AGAGGACCGGGAGCTGGTCTTGCTGAGGGAGGGGTTGAAGGAGGGGGGAA
GGGAGAGAGGGAGGGCGTGGGTGATACCTAATGACGGGGAGGTGGGCGAG
GTTTACAAGAAGGTGAAGGAGGTCTTGGCGCCTGTATTGGCGAAGGGCGG
GTTGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGTTGTACAATCCGAAT
CACCTGCAGAGGCAGCAGGAGTAGCAGCAGCAGCAGCAGCAGCAATAAGA
ACAAAAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAGCTGC
AGCAGCAACAGCCAAAACAAAACCCGCCTCCTCTTCCTCCCTCCTCCCAT
TCGGAGGCCTCCTTCTTCCCCCTCCCCTCTCCCTCGCTCTCCTCCGTGCC
GGCATCTCCTCACCCACCTCTATTCAAGAGGAAGCTTTTCCCCAAATCAT
GCGAGGACACCACGTCCTAATCCACGACGAAACCGGGTCTGGCAAAACCC
TCGCTTTCCTCCTCCCCCTCCTCCTTCCCCTCCTCCCTCCCCCCTCCCCC
TCGGATGAGAAAGCGAGCGCGGGTACTGCCCCTTCCTCCCCCTCCTCCTC
CCATTTCCTACCTTGCCAATTAATGATTGTGTGTCCCACGCGTGAATTAG
CCGTCCAAGTCGGTCGAGTCGTTTCGGACCTTCTGAGAGGGAAGGGCGAG
AGGGAGGATGGGAAGGAAGGGCAGGTCGCCCTGTTGATCGAAGAGAGCAG
GGAGGGAGCTCCACCCCTCCTCCCCTCCCTCCCTGCCCCTGTGTTGGTGG
GCACAGCCAAGGTATTGTGGTCGGAGATGGTAAAGGCGAATGGCACCTCG
TCCCAGACGAGGGCGGGGGAGAGGGAGGGGTGGATGCGGAATCTGCGGGC
CTTGGTGATAGATGAGGTGGACCGGTGTTTGTCGCCCCTGGGGCAATATG
CAACGTTGAAGGAGAAGAAGCAGAAGGGACGG

Coding sequence (CDS) from alignment at scaffold_22:93452..95533+

>mRNA_7889 ID=mRNA_7889|Name=jgi.p|Nanoce1779_2|174870|organism=Nannochloropsis oceanica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_22:93452..95533+ (Nannochloropsis oceanica)
ATGTCTTGTTGTGCGGCCGCTGGCGCAACGAGAGCGGCAAGAAGCCCTGT
TGCACTGCAACTTCTCACTCTATCCTATATACACACAGCAATGCCAACGC
CGGACACATCCCCACCAAGAAGAAGATTGCAAAATAGTCTCCGCCTTATC
CTCCTCAGCCTGACGACGATCAGTAACCTGGCCTTCCTCTTGCCCTCCTC
AGCGCGCTCCCCCAGCCTCCTCCCTCGGCCCACCACACGTTTATCGGTTG
ACTTCAACACGCTACCTCGCCCTGATGCTGCCACTGCTCTTGCTGCGGCT
ACAGGGACAGGCAATGACAATCTACCGGACAGACTGCCTATTGTGGCCAT
AATTGGCCACCCCGGCTCGGGTCAGACAACTTTTGCCAGTATGCTCGCTG
AAGACTACCCCAAACTTCACTACATCTCCACCAGCAGCGAACCAGGTCTC
CTCAATGAAGTCCGCACAATTCTTCGACAAGCAGCAGAAAAAGCAGCAGC
AGCACAAGCAGACCCCTCCCTCCCTCCTTCCCTCCCCCTCTCCCTTCCCG
AAGCCATGTCCCATGCCTTGGCCTCACGGATTCGCTCGGTCCTTGCCCTC
CCTCCCTCCCTCCCTCCCCCCCTCCCTTCCGCCATCCTTCTGGACGGGTG
GCCCCGTTCGATGACCGATCTAAAAACTTTGGAGGATGGGGGGAGGGAGG
GAGGGGAGGCAAGGTCGGTGTATGTGGATGCCTGTGTCTTTCTTGATAGT
GGCGAAGAGAAAGAGGACCGGGAGCTGGTCTTGCTGAGGGAGGGGTTGAA
GGAGGGGGGAAGGGAGAGAGGGAGGGCGTGGGTGATACCTAATGACGGGG
AGGTGGGCGAGGTTTACAAGAAGGTGAAGGAGGTCTTGGCGCCTGTATTG
GCGAAGGGCGGGTTGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGTTGT
ACAATCCGAATCACCTGCAGAGGCAGCAGGAGTAGCAGCAGCAGCAGCAG
CAGCAATAAGAACAAAAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCA
ACAGCAGCTGCAGCAGCAACAGCCAAAACAAAACCCGCCTCCTCTTCCTC
CCTCCTCCCATTCGGAGGCCTCCTTCTTCCCCCTCCCCTCTCCCTCGCTC
TCCTCCGTGCCGCTCCTCCTCCCATTTCCTACCTTGCCAATTAAATGTCT
TGTTGTGCGGCCGCTGGCGCAACGAGAGCGGCAAGAAGCCCTGTTGCACT
GCAACTTCTCACTCTATCCTATATACACACAGCAATGCCAACGCCGGACA
CATCCCCACCAAGAAGAAGATTGCAAAATAGTCTCCGCCTTATCCTCCTC
AGCCTGACGACGATCAGTAACCTGGCCTTCCTCTTGCCCTCCTCAGCGCG
CTCCCCCAGCCTCCTCCCTCGGCCCACCACACGTTTATCGGTTGACTTCA
ACACGCTACCTCGCCCTGATGCTGCCACTGCTCTTGCTGCGGCTACAGGG
ACAGGCAATGACAATCTACCGGACAGACTGCCTATTGTGGCCATAATTGG
CCACCCCGGCTCGGGTCAGACAACTTTTGCCAGTATGCTCGCTGAAGACT
ACCCCAAACTTCACTACATCTCCACCAGCAGCGAACCAGGTCTCCTCAAT
GAAGTCCGCACAATTCTTCGACAAGCAGCAGAAAAAGCAGCAGCAGCACA
AGCAGACCCCTCCCTCCCTCCTTCCCTCCCCCTCTCCCTTCCCGAAGCCA
TGTCCCATGCCTTGGCCTCACGGATTCGCTCGGTCCTTGCCCTCCCTCCC
TCCCTCCCTCCCCCCCTCCCTTCCGCCATCCTTCTGGACGGGTGGCCCCG
TTCGATGACCGATCTAAAAACTTTGGAGGATGGGGGGAGGGAGGGAGGGG
AGGCAAGGTCGGTGTATGTGGATGCCTGTGTCTTTCTTGATAGTGGCGAA
GAGAAAGAGGACCGGGAGCTGGTCTTGCTGAGGGAGGGGTTGAAGGAGGG
GGGAAGGGAGAGAGGGAGGGCGTGGGTGATACCTAATGACGGGGAGGTGG
GCGAGGTTTACAAGAAGGTGAAGGAGGTCTTGGCGCCTGTATTGGCGAAG
GGCGGGTTGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGTTGTACAATC
CGAATCACCTGCAGAGGCAGCAGGAGTAGCAGCAGCAGCAGCAGCAGCAA
TAAGAACAAAAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCA
GCTGCAGCAGCAACAGCCAAAACAAAACCCGCCTCCTCTTCCTCCCTCCT
CCCATTCGGAGGCCTCCTTCTTCCCCCTCCCCTCTCCCTCGCTCTCCTCC
GTGCCGCTCCTCCTCCCATTTCCTACCTTGCCAATTAAATGTCTTGTTGT
GCGGCCGCTGGCGCAACGAGAGCGGCAAGAAGCCCTGTTGCACTGCAACT
TCTCACTCTATCCTATATACACACAGCAATGCCAACGCCGGACACATCCC
CACCAAGAAGAAGATTGCAAAATAGTCTCCGCCTTATCCTCCTCAGCCTG
ACGACGATCAGTAACCTGGCCTTCCTCTTGCCCTCCTCAGCGCGCTCCCC
CAGCCTCCTCCCTCGGCCCACCACACGTTTATCGGTTGACTTCAACACGC
TACCTCGCCCTGATGCTGCCACTGCTCTTGCTGCGGCTACAGGGACAGGC
AATGACAATCTACCGGACAGACTGCCTATTGTGGCCATAATTGGCCACCC
CGGCTCGGGTCAGACAACTTTTGCCAGTATGCTCGCTGAAGACTACCCCA
AACTTCACTACATCTCCACCAGCAGCGAACCAGGTCTCCTCAATGAAGTC
CGCACAATTCTTCGACAAGCAGCAGAAAAAGCAGCAGCAGCACAAGCAGA
CCCCTCCCTCCCTCCTTCCCTCCCCCTCTCCCTTCCCGAAGCCATGTCCC
ATGCCTTGGCCTCACGGATTCGCTCGGTCCTTGCCCTCCCTCCCTCCCTC
CCTCCCCCCCTCCCTTCCGCCATCCTTCTGGACGGGTGGCCCCGTTCGAT
GACCGATCTAAAAACTTTGGAGGATGGGGGGAGGGAGGGAGGGGAGGCAA
GGTCGGTGTATGTGGATGCCTGTGTCTTTCTTGATAGTGGCGAAGAGAAA
GAGGACCGGGAGCTGGTCTTGCTGAGGGAGGGGTTGAAGGAGGGGGGAAG
GGAGAGAGGGAGGGCGTGGGTGATACCTAATGACGGGGAGGTGGGCGAGG
TTTACAAGAAGGTGAAGGAGGTCTTGGCGCCTGTATTGGCGAAGGGCGGG
TTGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGTTGTACAATCCGAATC
ACCTGCAGAGGCAGCAGGAGTAGCAGCAGCAGCAGCAGCAGCAATAAGAA
CAAAAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAGCTGCA
GCAGCAACAGCCAAAACAAAACCCGCCTCCTCTTCCTCCCTCCTCCCATT
CGGAGGCCTCCTTCTTCCCCCTCCCCTCTCCCTCGCTCTCCTCCGTGCCG
CTCCTCCTCCCATTTCCTACCTTGCCAATTAA

Synonyms

Publications