jgi.p|Nanoce1779_2|600381, mRNA_7885 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600381
Unique NamemRNA_7885
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length593
Alignment locationscaffold_22:77741..78830 -

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Properties
Property NameValue
TranscriptId600467
TrackFilteredModels2
ProteinId600381
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:77741..78830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600381gene_7885Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600381mRNA_7885-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7885CDS_7885Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7885 ID=mRNA_7885|Name=jgi.p|Nanoce1779_2|600381|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
AGTATAGTATTCCTATAGAATATGATTTTTCTGGTCTCTCTCCGCAGGTC
TCATCGCCCTTGGCGAGTACACGAGGGCAAGCATAATTGAGGTTCCCTCC
GGGAATACCCCACATCCGCATCACACACGTCTCACCCCGCCTCTCCACGC
CATCATGCCCTTTACAGGAAAGTTGAAGTGCTCGCAAAGGGCGGATAGAA
GGCAAGGCAAAGCAAAGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAAC
AGAAGCAATAGACACACGTAAAGCAAAGCACAATGGAAGAAGAGCCCTCC
AAGTACATCAAACTCATCAGTGCGGAGGGCCACGAGTTCATCGTCGACCG
CAAATGCGCCTGTGTCAGTAAAACCATCGAGGCCATGCTTGCAGGTGGCT
TCGCAGAAAGCAAAGGGGAAATCAAGTTTCCTGAGATCTCCACCAATATT
TTAGAGAAGGTCATACAGTACCTCTACTACAAGGTCCGCTACACGAACTC
CAATTCTAAAGTCCCTGACTTCAAGTTGGAGCCTGAAATGGCCTTGGAGC
TGTTGATGGCGGCTAACTTCTTAGACTGCTAGGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|600381

>mRNA_7885-protein ID=mRNA_7885-protein|Name=jgi.p|Nanoce1779_2|600381|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFP
EISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC*
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mRNA from alignment at scaffold_22:77741..78830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7885 ID=mRNA_7885|Name=jgi.p|Nanoce1779_2|600381|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_22:77741..78830- (Nannochloropsis oceanica)
AGTATAGTATTCCTATAGAATATGATTTTTCTGGTCTCTCTCCGCAGGTC
TCATCGCCCTTGGCGAGTACACGAGGGCAAGCATAATTGAGGTTCCCTCC
GGGAATACCCCACATCCGCATCACACACGTCTCACCCCGCCTCTCCACGC
CATCATGCCCTTTACAGGAAAGTTGAAGTGCTCGCAAAGGGCGGATAGAA
GGCAAGGCAAAGCAAAGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAAC
AGAAGCAATAGACACACGTAAAGCAAAGCACAATGGAAGAAGAGCCCTCC
AAGTACATCAAACTCATCAGGTACGTCTTGAGCCCCGTAGTACTGGTGAT
GATCGATGACAGCCACTCGGCACCGGTGGCGGTACCGGCGAAGCTCTTGG
CACAGCGAAATAAAAAGGAGAAATGGACGACTGCTCTCCACTAGCCCTAC
ACCCATCCTCCCTCTCCTTGCTTCTTAATCTTGTCCCACATACGACACTT
CGTCCGTGTTGTCTGGCTTCCAACTACCCTCCCATGATCTCTGTGGATTT
GTGCAATTTTCTATTTCTAGTCCTCGCTGTTAATGTACTTCTCTGCCTTT
CCCCCTCCGTCCCTCCCCTTTCTCCCTCAGTGCGGAGGGCCACGAGTTCA
TCGTCGACCGCAAATGCGCCTGTGTCAGTAAAACCATCGAGGCCATGCTT
GCAGGTGGCTTCGCAGAAAGCAAAGGGGAAATCAAGTTTCCTGAGATCTC
CACCAATATTTTAGAGAAGGTCATACAGTACCTCTACTACAAGGTTTGTA
TGTGTTTATCTTCCCCCCCCCCCTCCTCTCTCCTTTCGGTGTAAGCTTGT
CGAGCTTGTCGAACCCATCGAATGTATCGATCCGATTACCATGTCTTTCC
ATTTTACTGTGCTCACATTGCCACCTCACTTACCCATTCACCACTCCTTC
CCTCCCTCGTTTTCTCCTTCCTTCCCTCAGGTCCGCTACACGAACTCCAA
TTCTAAAGTCCCTGACTTCAAGTTGGAGCCTGAAATGGCCTTGGAGCTGT
TGATGGCGGCTAACTTCTTAGACTGCTAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_22:77741..78830-

>mRNA_7885 ID=mRNA_7885|Name=jgi.p|Nanoce1779_2|600381|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_22:77741..78830- (Nannochloropsis oceanica)
GTCCGCTACACGAACTCCAATTCTAAAGTCCCTGACTTCAAGTTGGAGCC
TGAAATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAGT
GCGGAGGGCCACGAGTTCATCGTCGACCGCAAATGCGCCTGTGTCAGTAA
AACCATCGAGGCCATGCTTGCAGGTGGCTTCGCAGAAAGCAAAGGGGAAA
TCAAGTTTCCTGAGATCTCCACCAATATTTTAGAGAAGGTCATACAGTAC
CTCTACTACAAGATGGAAGAAGAGCCCTCCAAGTACATCAAACTCATCAG
GTCCGCTACACGAACTCCAATTCTAAAGTCCCTGACTTCAAGTTGGAGCC
TGAAATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAGT
GCGGAGGGCCACGAGTTCATCGTCGACCGCAAATGCGCCTGTGTCAGTAA
AACCATCGAGGCCATGCTTGCAGGTGGCTTCGCAGAAAGCAAAGGGGAAA
TCAAGTTTCCTGAGATCTCCACCAATATTTTAGAGAAGGTCATACAGTAC
CTCTACTACAAGATGGAAGAAGAGCCCTCCAAGTACATCAAACTCATCAG
GTCCGCTACACGAACTCCAATTCTAAAGTCCCTGACTTCAAGTTGGAGCC
TGAAATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAGT
GCGGAGGGCCACGAGTTCATCGTCGACCGCAAATGCGCCTGTGTCAGTAA
AACCATCGAGGCCATGCTTGCAGGTGGCTTCGCAGAAAGCAAAGGGGAAA
TCAAGTTTCCTGAGATCTCCACCAATATTTTAGAGAAGGTCATACAGTAC
CTCTACTACAAGATGGAAGAAGAGCCCTCCAAGTACATCAAACTCATCAG
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Synonyms
Publications