jgi.p|Nanoce1779_2|174431, mRNA_7883 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|174431
Unique Name	mRNA_7883
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1398
Alignment location	scaffold_22:71332..72729 +

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Properties


Property Name	Value
TranscriptId	174517
Track	FilteredModels2
ProteinId	174431

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:71332..72729 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|174431	gene_7883	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|174431	mRNA_7883-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7883	CDS_7883	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:71332..72729+
coding sequence from alignment at scaffold_22:71332..72729+

mRNA sequence

>mRNA_7883 ID=mRNA_7883|Name=jgi.p|Nanoce1779_2|174431|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp
TGTCGTTTCCCGTCTTGCTGCTGTCTCTTGCCCACTCTTACCCTAATCTC
AATCCCACCCTTCCAAATAACAACCTCACACAGGCAATAACGAAACTATA
TGACGCCCCGCGTAGCAGCATCCTTCAGGCGGGTCGTCCTCGCCGCACAC
TCGAGAGGGAGCGTACGGCCCTCCTCCTCCTCTTCGCCCTCTTCCTCCTC
CTCCACCTCCTCCTCCTTTCCAACAGCAATTCATCCCGAAGCGACCAAGG
TGGCACAACAAGGCCGCGAGGAAGCAATATGGATAAGCAAACCGACCAAC
TCCAGACTCATCCAGCCACCGACACAAACTCCCTTGTCCGTAGCAGCAGC
AGCACAGGTAGATGGCTCAACTTCACATGCCCTAGAAGAGTACCTGCGTC
AGCGGAACTGGGCAGAGCCCAGCACTACCGCCCTCCTCGATTCGCCCGGC
ATTCGCATCCTCTCCCACCTCCTTTCGTATCCAATGACATTGGCACATTA
CTTGCCGCACCTGCAAAAGGCAGCGAAGGCGACGGACACAAAAAAGGAGG
AGGCAGCAACAGCAATGCACCTCGCCATTTTGGGCGCGCGGGCTGAGGTC
TCTCTCCCCAGTGCCTGGTGGATGGAACTGTTGTGCCTTCGCCGCGCCCA
TCTCCACCTTCACATGGTAGGACCTGAGCTGCCACAGGCCGTGGCAAAAT
CAGCAGCAGAAGCAGCAGAGCACGTGGTCCTCGACGCAGATCGACAATTG
TGGCTACACAAGCACCATGGCTTGTACCACGTAATTGTCGCCGATGTTAT
CTCTTCAGTCGCAACATTATCATCGTCGTCATCATCATCAGCAGCAGCTA
CAGCGCGAGGAGGAGGATCTCTTGATGCCGTTGTGCTCTACAACCCAGGC
CTAGGCCACCCCGCACTGAGGGCAGCATGGACTCCTACCTTAGCAAAGCT
ACGAGCTGAAAGAAGATCCGCTCTATGGACGGCACACTCGCAAGAAGATC
GGGACAGGGACATAGCGCTTCTGGGGGCGCAAGGGAAGGATGTTGAGTGG
CTGGTGGGACCGGAGCGTAATCCGTTTGCGTCGCGGAAATGTTTGATAGA
CCCCTTGGACACGCGGCATGTATTGGCTGCGAATGAATATGTGGGTGTTT
TTCGATGGAGAGAGTAAAGGATCCTACAAAGGAGTGGAAAATAAAGGCCG
ATTAAGTATTGTATTATTATTCCTCCTTTGACTCTTGATACGTCCAAGAC
GCCGATATGGAAAGGAAAAAAACCATCCAGGAGCCGGGAATGACGAACGC
CAAAAATTAATAGTCTATCACGTGATACATATAGATATTCTTATTTTTTG
ATTACATCCCTCACCGCGATTCGTTTATGAACGCGTGGTAAAAATGAG

protein sequence of jgi.p|Nanoce1779_2|174431

>mRNA_7883-protein ID=mRNA_7883-protein|Name=jgi.p|Nanoce1779_2|174431|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MTPRVAASFRRVVLAAHSRGSVRPSSSSSPSSSSSTSSSFPTAIHPEATK
VAQQGREEAIWISKPTNSRLIQPPTQTPLSVAAAAQVDGSTSHALEEYLR
QRNWAEPSTTALLDSPGIRILSHLLSYPMTLAHYLPHLQKAAKATDTKKE
EAATAMHLAILGARAEVSLPSAWWMELLCLRRAHLHLHMVGPELPQAVAK
SAAEAAEHVVLDADRQLWLHKHHGLYHVIVADVISSVATLSSSSSSSAAA
TARGGGSLDAVVLYNPGLGHPALRAAWTPTLAKLRAERRSALWTAHSQED
RDRDIALLGAQGKDVEWLVGPERNPFASRKCLIDPLDTRHVLAANEYVGV
FRWRE*

mRNA from alignment at scaffold_22:71332..72729+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7883 ID=mRNA_7883|Name=jgi.p|Nanoce1779_2|174431|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at scaffold_22:71332..72729+ (Nannochloropsis oceanica)
TGTCGTTTCCCGTCTTGCTGCTGTCTCTTGCCCACTCTTACCCTAATCTC
AATCCCACCCTTCCAAATAACAACCTCACACAGGCAATAACGAAACTATA
TGACGCCCCGCGTAGCAGCATCCTTCAGGCGGGTCGTCCTCGCCGCACAC
TCGAGAGGGAGCGTACGGCCCTCCTCCTCCTCTTCGCCCTCTTCCTCCTC
CTCCACCTCCTCCTCCTTTCCAACAGCAATTCATCCCGAAGCGACCAAGG
TGGCACAACAAGGCCGCGAGGAAGCAATATGGATAAGCAAACCGACCAAC
TCCAGACTCATCCAGCCACCGACACAAACTCCCTTGTCCGTAGCAGCAGC
AGCACAGGTAGATGGCTCAACTTCACATGCCCTAGAAGAGTACCTGCGTC
AGCGGAACTGGGCAGAGCCCAGCACTACCGCCCTCCTCGATTCGCCCGGC
ATTCGCATCCTCTCCCACCTCCTTTCGTATCCAATGACATTGGCACATTA
CTTGCCGCACCTGCAAAAGGCAGCGAAGGCGACGGACACAAAAAAGGAGG
AGGCAGCAACAGCAATGCACCTCGCCATTTTGGGCGCGCGGGCTGAGGTC
TCTCTCCCCAGTGCCTGGTGGATGGAACTGTTGTGCCTTCGCCGCGCCCA
TCTCCACCTTCACATGGTAGGACCTGAGCTGCCACAGGCCGTGGCAAAAT
CAGCAGCAGAAGCAGCAGAGCACGTGGTCCTCGACGCAGATCGACAATTG
TGGCTACACAAGCACCATGGCTTGTACCACGTAATTGTCGCCGATGTTAT
CTCTTCAGTCGCAACATTATCATCGTCGTCATCATCATCAGCAGCAGCTA
CAGCGCGAGGAGGAGGATCTCTTGATGCCGTTGTGCTCTACAACCCAGGC
CTAGGCCACCCCGCACTGAGGGCAGCATGGACTCCTACCTTAGCAAAGCT
ACGAGCTGAAAGAAGATCCGCTCTATGGACGGCACACTCGCAAGAAGATC
GGGACAGGGACATAGCGCTTCTGGGGGCGCAAGGGAAGGATGTTGAGTGG
CTGGTGGGACCGGAGCGTAATCCGTTTGCGTCGCGGAAATGTTTGATAGA
CCCCTTGGACACGCGGCATGTATTGGCTGCGAATGAATATGTGGGTGTTT
TTCGATGGAGAGAGTAAAGGATCCTACAAAGGAGTGGAAAATAAAGGCCG
ATTAAGTATTGTATTATTATTCCTCCTTTGACTCTTGATACGTCCAAGAC
GCCGATATGGAAAGGAAAAAAACCATCCAGGAGCCGGGAATGACGAACGC
CAAAAATTAATAGTCTATCACGTGATACATATAGATATTCTTATTTTTTG
ATTACATCCCTCACCGCGATTCGTTTATGAACGCGTGGTAAAAATGAG

Coding sequence (CDS) from alignment at scaffold_22:71332..72729+

>mRNA_7883 ID=mRNA_7883|Name=jgi.p|Nanoce1779_2|174431|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_22:71332..72729+ (Nannochloropsis oceanica)
ATGACGCCCCGCGTAGCAGCATCCTTCAGGCGGGTCGTCCTCGCCGCACA
CTCGAGAGGGAGCGTACGGCCCTCCTCCTCCTCTTCGCCCTCTTCCTCCT
CCTCCACCTCCTCCTCCTTTCCAACAGCAATTCATCCCGAAGCGACCAAG
GTGGCACAACAAGGCCGCGAGGAAGCAATATGGATAAGCAAACCGACCAA
CTCCAGACTCATCCAGCCACCGACACAAACTCCCTTGTCCGTAGCAGCAG
CAGCACAGGTAGATGGCTCAACTTCACATGCCCTAGAAGAGTACCTGCGT
CAGCGGAACTGGGCAGAGCCCAGCACTACCGCCCTCCTCGATTCGCCCGG
CATTCGCATCCTCTCCCACCTCCTTTCGTATCCAATGACATTGGCACATT
ACTTGCCGCACCTGCAAAAGGCAGCGAAGGCGACGGACACAAAAAAGGAG
GAGGCAGCAACAGCAATGCACCTCGCCATTTTGGGCGCGCGGGCTGAGGT
CTCTCTCCCCAGTGCCTGGTGGATGGAACTGTTGTGCCTTCGCCGCGCCC
ATCTCCACCTTCACATGGTAGGACCTGAGCTGCCACAGGCCGTGGCAAAA
TCAGCAGCAGAAGCAGCAGAGCACGTGGTCCTCGACGCAGATCGACAATT
GTGGCTACACAAGCACCATGGCTTGTACCACGTAATTGTCGCCGATGTTA
TCTCTTCAGTCGCAACATTATCATCGTCGTCATCATCATCAGCAGCAGCT
ACAGCGCGAGGAGGAGGATCTCTTGATGCCGTTGTGCTCTACAACCCAGG
CCTAGGCCACCCCGCACTGAGGGCAGCATGGACTCCTACCTTAGCAAAGC
TACGAGCTGAAAGAAGATCCGCTCTATGGACGGCACACTCGCAAGAAGAT
CGGGACAGGGACATAGCGCTTCTGGGGGCGCAAGGGAAGGATGTTGAGTG
GCTGGTGGGACCGGAGCGTAATCCGTTTGCGTCGCGGAAATGTTTGATAG
ACCCCTTGGACACGCGGCATGTATTGGCTGCGAATGAATATGTGGGTGTT
TTTCGATGGAGAGAGTAA

Synonyms

Publications