jgi.p|Nanoce1779_2|641478, mRNA_7882 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641478
Unique NamemRNA_7882
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length474
Alignment locationscaffold_22:70269..70742 -

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Properties
Property NameValue
TranscriptId641564
TrackFilteredModels2
ProteinId641478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:70269..70742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641478gene_7882Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7882CDS_7882Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641478mRNA_7882-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7882 ID=mRNA_7882|Name=jgi.p|Nanoce1779_2|641478|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
ATGGCGGGCCAAGCACGAAAAAAGGCGCAAAAAGCAGCCAACATCACAGG
CTCCTTCTACTGGAAAGTCATCATAGTCGTGAACCTCCTCTATGTCGCCT
GCCTCGCCTACCACATCAAGAATAACACCAAATTCTGGGTCGAAATGCAA
CAGTGGAGTGTCAAGAAAAAAATTGCCTTCCCCTTCCTCACATTCTGTTG
CTACGCCCTTGCGTATCACGGACTCGTTTCGGCCGCGGTAGAGCGCTTGT
CGGCGAGTACGTACGTGGATTTATTGGGTTTAACAATGGCCGCGCAATTT
ACGAGTTTTGTGACTCATTGGTTTTGGGTCTTGTTTTTGGTTTTGCCCGT
GGCAGGGGTATACTTATATGTGCTACCGTTGTTTGGGATGTTGAAGGGTT
TGATGGGAGGAGGAGGGGGGGAGGGAGGGACGGGAGGGGAGGACGAGAAG
AAGGAGAAGAAGAAAAGGAAATAA
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protein sequence of jgi.p|Nanoce1779_2|641478

>mRNA_7882-protein ID=mRNA_7882-protein|Name=jgi.p|Nanoce1779_2|641478|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MAGQARKKAQKAANITGSFYWKVIIVVNLLYVACLAYHIKNNTKFWVEMQ
QWSVKKKIAFPFLTFCCYALAYHGLVSAAVERLSASTYVDLLGLTMAAQF
TSFVTHWFWVLFLVLPVAGVYLYVLPLFGMLKGLMGGGGGEGGTGGEDEK
KEKKKRK*
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mRNA from alignment at scaffold_22:70269..70742-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7882 ID=mRNA_7882|Name=jgi.p|Nanoce1779_2|641478|organism=Nannochloropsis oceanica|type=mRNA|length=474bp|location=Sequence derived from alignment at scaffold_22:70269..70742- (Nannochloropsis oceanica)
ATGGCGGGCCAAGCACGAAAAAAGGCGCAAAAAGCAGCCAACATCACAGG
CTCCTTCTACTGGAAAGTCATCATAGTCGTGAACCTCCTCTATGTCGCCT
GCCTCGCCTACCACATCAAGAATAACACCAAATTCTGGGTCGAAATGCAA
CAGTGGAGTGTCAAGAAAAAAATTGCCTTCCCCTTCCTCACATTCTGTTG
CTACGCCCTTGCGTATCACGGACTCGTTTCGGCCGCGGTAGAGCGCTTGT
CGGCGAGTACGTACGTGGATTTATTGGGTTTAACAATGGCCGCGCAATTT
ACGAGTTTTGTGACTCATTGGTTTTGGGTCTTGTTTTTGGTTTTGCCCGT
GGCAGGGGTATACTTATATGTGCTACCGTTGTTTGGGATGTTGAAGGGTT
TGATGGGAGGAGGAGGGGGGGAGGGAGGGACGGGAGGGGAGGACGAGAAG
AAGGAGAAGAAGAAAAGGAAATAA
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Coding sequence (CDS) from alignment at scaffold_22:70269..70742-

>mRNA_7882 ID=mRNA_7882|Name=jgi.p|Nanoce1779_2|641478|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_22:70269..70742- (Nannochloropsis oceanica)
ATGGCGGGCCAAGCACGAAAAAAGGCGCAAAAAGCAGCCAACATCACAGG
CTCCTTCTACTGGAAAGTCATCATAGTCGTGAACCTCCTCTATGTCGCCT
GCCTCGCCTACCACATCAAGAATAACACCAAATTCTGGGTCGAAATGCAA
CAGTGGAGTGTCAAGAAAAAAATTGCCTTCCCCTTCCTCACATTCTGTTG
CTACGCCCTTGCGTATCACGGACTCGTTTCGGCCGCGGTAGAGCGCTTGT
CGGCGAGTACGTACGTGGATTTATTGGGTTTAACAATGGCCGCGCAATTT
ACGAGTTTTGTGACTCATTGGTTTTGGGTCTTGTTTTTGGTTTTGCCCGT
GGCAGGGGTATACTTATATGTGCTACCGTTGTTTGGGATGTTGAAGGGTT
TGATGGGAGGAGGAGGGGGGGAGGGAGGGACGGGAGGGGAGGACGAGAAG
AAGGAGAAGAAGAAAAGGAAATAA
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Synonyms
Publications