jgi.p|Nanoce1779_2|600365, mRNA_7881 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600365
Unique NamemRNA_7881
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_22:68670..69613 +

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Properties
Property NameValue
TranscriptId600451
TrackFilteredModels2
ProteinId600365
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:68670..69613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600365gene_7881Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600365mRNA_7881-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7881CDS_7881Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7881 ID=mRNA_7881|Name=jgi.p|Nanoce1779_2|600365|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ACAGGGAAGACGCGGTGCTCACAAAGGGCGGATAGAAAGCAAGGTAAAGC
AAGGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAACGGTAGCAATAGAC
ACACGCAATGCAAAGCCCTATGGAAGAAGAGCCCTCCAAGTACATCAAGC
TCATCAGGTACGCCTTGAGCCCCGTGGTACTGGTGATTATCGATAACAGG
CCCTCGTCACCGGTGGCGGTACCGGCGAAGCTCTTGGCACAGCGAAAGAA
AGACGAGAAATGTACGACTGCTCTCCTCTAGCCCTACACCCGTCCTCCCT
CTTGCTGCCTCGTCTTGTCCTCCACATGGCACTCCGTCCGTGTTGTCTGG
CTTCCAACTACCCTTTCATGGTCTGTGTCAACTCGTGAACTTTTGCCTTC
CACTTCCTCGCTGTTAATGTACTTCTCTGCCTTTCCCCCTCCGTCCCTCC
CCTTTCTCCCTCAGTGCGGAGGGCCACGAGTTCATCGTCGACCGCAAATG
CGCCTGTGTCAGTAAAACCATCGAGGCCATGCTTGCAGGTGGCTTCACAG
AAAGCAAAGGGGAAATCAAGTTTCCTGAGATCTCTACCAATATTTTAGAG
AAGGTTATACAGTACCTCTACTACAAGGTCCGCTACACGAACTCCAATTC
TAAAGTCCCTGACTTTAAGTTGGAGCCTGAAATGGCCTTGGAGCTGTTGA
TGGCGGCTAACTTCTTAGACTGCTAGGGAGGGAGGGATGAGGGCTGGAGA
GAGTATCCTGGCCCTTCTATGGAGCCTGGAATTCGTTGTCAAGCTGCTGA
TGGCCACAAATGGCTTAGATTCCAA
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protein sequence of jgi.p|Nanoce1779_2|600365

>mRNA_7881-protein ID=mRNA_7881-protein|Name=jgi.p|Nanoce1779_2|600365|organism=Nannochloropsis oceanica|type=polypeptide|length=66bp
MLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEP
EMALELLMAANFLDC*
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mRNA from alignment at scaffold_22:68670..69613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7881 ID=mRNA_7881|Name=jgi.p|Nanoce1779_2|600365|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at scaffold_22:68670..69613+ (Nannochloropsis oceanica)
ACAGGGAAGACGCGGTGCTCACAAAGGGCGGATAGAAAGCAAGGTAAAGC
AAGGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAACGGTAGCAATAGAC
ACACGCAATGCAAAGCCCTATGGAAGAAGAGCCCTCCAAGTACATCAAGC
TCATCAGGTACGCCTTGAGCCCCGTGGTACTGGTGATTATCGATAACAGG
CCCTCGTCACCGGTGGCGGTACCGGCGAAGCTCTTGGCACAGCGAAAGAA
AGACGAGAAATGTACGACTGCTCTCCTCTAGCCCTACACCCGTCCTCCCT
CTTGCTGCCTCGTCTTGTCCTCCACATGGCACTCCGTCCGTGTTGTCTGG
CTTCCAACTACCCTTTCATGGTCTGTGTCAACTCGTGAACTTTTGCCTTC
CACTTCCTCGCTGTTAATGTACTTCTCTGCCTTTCCCCCTCCGTCCCTCC
CCTTTCTCCCTCAGTGCGGAGGGCCACGAGTTCATCGTCGACCGCAAATG
CGCCTGTGTCAGTAAAACCATCGAGGCCATGCTTGCAGGTGGCTTCACAG
AAAGCAAAGGGGAAATCAAGTTTCCTGAGATCTCTACCAATATTTTAGAG
AAGGTTATACAGTACCTCTACTACAAGGTTTGTATGTGTTTACCTCACAT
AATTATCATGCCTTCCCACTTCACTCTCCTCGCATAGCCACCCAACTCAC
CCACCACTTCTTTTTTGCTCACTTGTTTTCTCCTTCCTTCCCCCAGGTCC
GCTACACGAACTCCAATTCTAAAGTCCCTGACTTTAAGTTGGAGCCTGAA
ATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAGGGAGG
GAGGGATGAGGGCTGGAGAGAGTATCCTGGCCCTTCTATGGAGCCTGGAA
TTCGTTGTCAAGCTGCTGATGGCCACAAATGGCTTAGATTCCAA
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Coding sequence (CDS) from alignment at scaffold_22:68670..69613+

>mRNA_7881 ID=mRNA_7881|Name=jgi.p|Nanoce1779_2|600365|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_22:68670..69613+ (Nannochloropsis oceanica)
ATGCTTGCAGGTGGCTTCACAGAAAGCAAAGGGGAAATCAAGTTTCCTGA
GATCTCTACCAATATTTTAGAGAAGGTTATACAGTACCTCTACTACAAGG
TCCGCTACACGAACTCCAATTCTAAAGTCCCTGACTTTAAGTTGGAGCCT
GAAATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAGAT
GCTTGCAGGTGGCTTCACAGAAAGCAAAGGGGAAATCAAGTTTCCTGAGA
TCTCTACCAATATTTTAGAGAAGGTTATACAGTACCTCTACTACAAGGTC
CGCTACACGAACTCCAATTCTAAAGTCCCTGACTTTAAGTTGGAGCCTGA
AATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAG
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Synonyms
Publications