jgi.p|Nanoce1779_2|545772, mRNA_7875 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|545772
Unique NamemRNA_7875
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1454
Alignment locationscaffold_22:46613..48163 -

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Properties
Property NameValue
TranscriptId545858
TrackFilteredModels2
ProteinId545772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:46613..48163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545772gene_7875Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545772mRNA_7875-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7875CDS_7875Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7875 ID=mRNA_7875|Name=jgi.p|Nanoce1779_2|545772|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
GACTTTGCCTGATGAAAAACCTGTTAAAGTCGCCAGTAAAACTCGGACAA
AAGTAAGGGGTGAATGTGCAACAATATATTGTTGGACGGCTCCCCATCGT
ATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGGGATG
TAAAGGAACTAACCTCCCCACTTGTCAAGTCATCAAGTACCATCACGCTG
TCCATGCATGCATGCTGATGCTGCTTAATCTTCGCCCGCTTGCCGCTTGT
CTGTGAACTCATTACGTGAACTCTCAATTCACACCAGAACATACACGATG
CATGGTAGGACGTAGCTGCAGCCACCATCATGCCGCCTTCCCATGCTTCT
TCCTCAACCTCCTCGTCCATCCTTTCGGGCTACTTCAAATTTGCAATCGC
CCCCATTCTCTTTCCTCTGTTCCTCGGCGTCTTTAGCAACATCATAAAGC
CTTCCTTTCCCGTCCCTGCCCCTGGAGCGGCGGTCGTCATTACCGGTAGC
AGCACTGGGATAGGACGTCATGCTGCTGCCGAGCTGGCTGCCGACGGCTT
CTTGGTCTTCGCGGGCGTCCGAAACCTGAGCGATGTGGATGGTCTGGTAA
AGTCTTATCCAGGACGGGTGGTACCTTTGCTACTGGATGTGACCGATACG
GAGGGGGGCGTGACACGTGCGGCGGAGGAAGTGGAGCGGGTCTTGCGGGA
AAGGGGGGGCAACATTCCCTTGGCCGGTTTGGTGAATAACGCAGGGATTG
GTGTTGCGCTTCCCTTGGAACTTATTTCCCTCGACAGGTTCAGGCAAGTC
ATGGAAGTGAATGTCGTGGGCGTCCTCGCAGTCTCTCAAGCCTTTATTCC
ACGGCTTCGTCGCGACCAAGGTCGCATCATCAATGTAGGAAGTGCCGCAG
GTTTCACGGTCCCACCAGGATATGGCGCATACTCAAGCAGTAAATTCGCC
TTGGAAGCTGTATCAGACGCGTTCCGCTTGGAATTACGGCCGTGGAATAT
CTCAGTCTCTTTGCTCGAGCCGGGTACCGTAGAGAGCGAGATTCGGCGGA
AGAATTTGGGGGATGGTGTCCCATTCAAGGATCTACCGGAGAAGGCTTAT
GCACTGTATCGACACATGTTTGATACATACGAAGCACGCGTGACAGCACT
GGACCGCAATGCAGGGTCAGCGCAGTTGACAACAGACGCCATCGTGCATG
CCTTGACGAGCGCAACGCCGCAAAGCCGTTATATTATTGGGAAATATCAG
GGTTTAAGTTTGAGTGCCTTTCGTATTTTTGTTATGCCATTTCTACCGGA
CCATGTGCAGGACTGGGGTAAAATCAAATCCCTTCAAAAAGCCCTGTGAT
TGTGGCGAAGGAGTGATGGGGTTGAAGATAGAGTTGGGCGAATCAATAAC
TGAGATAGAAGAGTTGGTGCATGTAATGAAAGAAAACTTACAGGGGGACT
TTTG
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protein sequence of jgi.p|Nanoce1779_2|545772

>mRNA_7875-protein ID=mRNA_7875-protein|Name=jgi.p|Nanoce1779_2|545772|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MPPSHASSSTSSSILSGYFKFAIAPILFPLFLGVFSNIIKPSFPVPAPGA
AVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPL
LLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELIS
LDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGA
YSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFK
DLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSR
YIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIKSLQKAL*
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mRNA from alignment at scaffold_22:46613..48163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7875 ID=mRNA_7875|Name=jgi.p|Nanoce1779_2|545772|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp|location=Sequence derived from alignment at scaffold_22:46613..48163- (Nannochloropsis oceanica)
GACTTTGCCTGATGAAAAACCTGTTAAAGTCGCCAGTAAAACTCGGACAA
AAGTAAGGGGTGAATGTGCAACAATATATTGTTGGACGGCTCCCCATCGT
ATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGGGATG
TAAAGGAACTAACCTCCCCACTTGTCAAGTCATCAAGTACCATCACGCTG
TCCATGCATGCATGCTGATGCTGCTTAATCTTCGCCCGCTTGCCGCTTGT
CTGTGAACTCATTACGTGAACTCTCAATTCACACCAGAACATACACGATG
CATGGTAGGACGTAGCTGCAGCCACCATCATGCCGCCTTCCCATGCTTCT
TCCTCAACCTCCTCGTCCATCCTTTCGGGCTACTTCAAATTTGCAATCGC
CCCCATTCTCTTTCCTCTGTTCCTCGGCGTCTTTAGCAACATCATAAAGC
CTTCCTTTCCCGTCCCTGCCCCTGGAGCGGCGGTCGTCATTACCGGTAGC
AGCACTGGGATAGGACGTCATGCTGCTGCCGAGCTGGCTGCCGACGGCTT
CTTGGTCTTCGCGGGCGTCCGAAACCTGAGCGATGTGGATGGTCTGGTAA
AGTCTTATCCAGGACGGGTGGTACCTTTGCTACTGGATGTGACCGATACG
GAGGGGGGCGTGACACGTGCGGCGGAGGAAGTGGAGCGGGTCTTGCGGGA
AAGGGGGGGCAACATTCCCTTGGCCGGTTTGGTGAATAACGCAGGGATTG
GTGCGTTTACCGTATCCTGTCCGCTCTGAAAAGGCCTGATATCTCTCAAT
TTTTAAAAACTCACTGCCATTCCAACTTTTACAAACAAATGACCCAGGTG
TTGCGCTTCCCTTGGAACTTATTTCCCTCGACAGGTTCAGGCAAGTCATG
GAAGTGAATGTCGTGGGCGTCCTCGCAGTCTCTCAAGCCTTTATTCCACG
GCTTCGTCGCGACCAAGGTCGCATCATCAATGTAGGAAGTGCCGCAGGTT
TCACGGTCCCACCAGGATATGGCGCATACTCAAGCAGTAAATTCGCCTTG
GAAGCTGTATCAGACGCGTTCCGCTTGGAATTACGGCCGTGGAATATCTC
AGTCTCTTTGCTCGAGCCGGGTACCGTAGAGAGCGAGATTCGGCGGAAGA
ATTTGGGGGATGGTGTCCCATTCAAGGATCTACCGGAGAAGGCTTATGCA
CTGTATCGACACATGTTTGATACATACGAAGCACGCGTGACAGCACTGGA
CCGCAATGCAGGGTCAGCGCAGTTGACAACAGACGCCATCGTGCATGCCT
TGACGAGCGCAACGCCGCAAAGCCGTTATATTATTGGGAAATATCAGGGT
TTAAGTTTGAGTGCCTTTCGTATTTTTGTTATGCCATTTCTACCGGACCA
TGTGCAGGACTGGGGTAAAATCAAATCCCTTCAAAAAGCCCTGTGATTGT
GGCGAAGGAGTGATGGGGTTGAAGATAGAGTTGGGCGAATCAATAACTGA
GATAGAAGAGTTGGTGCATGTAATGAAAGAAAACTTACAGGGGGACTTTT
G
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Coding sequence (CDS) from alignment at scaffold_22:46613..48163-

>mRNA_7875 ID=mRNA_7875|Name=jgi.p|Nanoce1779_2|545772|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_22:46613..48163- (Nannochloropsis oceanica)
GTGTTGCGCTTCCCTTGGAACTTATTTCCCTCGACAGGTTCAGGCAAGTC
ATGGAAGTGAATGTCGTGGGCGTCCTCGCAGTCTCTCAAGCCTTTATTCC
ACGGCTTCGTCGCGACCAAGGTCGCATCATCAATGTAGGAAGTGCCGCAG
GTTTCACGGTCCCACCAGGATATGGCGCATACTCAAGCAGTAAATTCGCC
TTGGAAGCTGTATCAGACGCGTTCCGCTTGGAATTACGGCCGTGGAATAT
CTCAGTCTCTTTGCTCGAGCCGGGTACCGTAGAGAGCGAGATTCGGCGGA
AGAATTTGGGGGATGGTGTCCCATTCAAGGATCTACCGGAGAAGGCTTAT
GCACTGTATCGACACATGTTTGATACATACGAAGCACGCGTGACAGCACT
GGACCGCAATGCAGGGTCAGCGCAGTTGACAACAGACGCCATCGTGCATG
CCTTGACGAGCGCAACGCCGCAAAGCCGTTATATTATTGGGAAATATCAG
GGTTTAAGTTTGAGTGCCTTTCGTATTTTTGTTATGCCATTTCTACCGGA
CCATGTGCAGGACTGGGGTAAAATCAAATCCCTTCAAAAAGCCCTGTGAA
TGCCGCCTTCCCATGCTTCTTCCTCAACCTCCTCGTCCATCCTTTCGGGC
TACTTCAAATTTGCAATCGCCCCCATTCTCTTTCCTCTGTTCCTCGGCGT
CTTTAGCAACATCATAAAGCCTTCCTTTCCCGTCCCTGCCCCTGGAGCGG
CGGTCGTCATTACCGGTAGCAGCACTGGGATAGGACGTCATGCTGCTGCC
GAGCTGGCTGCCGACGGCTTCTTGGTCTTCGCGGGCGTCCGAAACCTGAG
CGATGTGGATGGTCTGGTAAAGTCTTATCCAGGACGGGTGGTACCTTTGC
TACTGGATGTGACCGATACGGAGGGGGGCGTGACACGTGCGGCGGAGGAA
GTGGAGCGGGTCTTGCGGGAAAGGGGGGGCAACATTCCCTTGGCCGGTTT
GGTGAATAACGCAGGGATTGGTGTTGCGCTTCCCTTGGAACTTATTTCCC
TCGACAGGTTCAGGCAAGTCATGGAAGTGAATGTCGTGGGCGTCCTCGCA
GTCTCTCAAGCCTTTATTCCACGGCTTCGTCGCGACCAAGGTCGCATCAT
CAATGTAGGAAGTGCCGCAGGTTTCACGGTCCCACCAGGATATGGCGCAT
ACTCAAGCAGTAAATTCGCCTTGGAAGCTGTATCAGACGCGTTCCGCTTG
GAATTACGGCCGTGGAATATCTCAGTCTCTTTGCTCGAGCCGGGTACCGT
AGAGAGCGAGATTCGGCGGAAGAATTTGGGGGATGGTGTCCCATTCAAGG
ATCTACCGGAGAAGGCTTATGCACTGTATCGACACATGTTTGATACATAC
GAAGCACGCGTGACAGCACTGGACCGCAATGCAGGGTCAGCGCAGTTGAC
AACAGACGCCATCGTGCATGCCTTGACGAGCGCAACGCCGCAAAGCCGTT
ATATTATTGGGAAATATCAGGGTTTAAGTTTGAGTGCCTTTCGTATTTTT
GTTATGCCATTTCTACCGGACCATGTGCAGGACTGGGGTAAAATCAAATC
CCTTCAAAAAGCCCTGTGAATGCCGCCTTCCCATGCTTCTTCCTCAACCT
CCTCGTCCATCCTTTCGGGCTACTTCAAATTTGCAATCGCCCCCATTCTC
TTTCCTCTGTTCCTCGGCGTCTTTAGCAACATCATAAAGCCTTCCTTTCC
CGTCCCTGCCCCTGGAGCGGCGGTCGTCATTACCGGTAGCAGCACTGGGA
TAGGACGTCATGCTGCTGCCGAGCTGGCTGCCGACGGCTTCTTGGTCTTC
GCGGGCGTCCGAAACCTGAGCGATGTGGATGGTCTGGTAAAGTCTTATCC
AGGACGGGTGGTACCTTTGCTACTGGATGTGACCGATACGGAGGGGGGCG
TGACACGTGCGGCGGAGGAAGTGGAGCGGGTCTTGCGGGAAAGGGGGGGC
AACATTCCCTTGGCCGGTTTGGTGAATAACGCAGGGATTG
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Synonyms
Publications