jgi.p|Nanoce1779_2|600324, mRNA_7873 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600324
Unique NamemRNA_7873
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2590
Alignment locationscaffold_22:38905..41494 -

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Properties
Property NameValue
TranscriptId600410
TrackFilteredModels2
ProteinId600324
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:38905..41494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600324gene_7873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600324mRNA_7873-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7873CDS_7873Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7873 ID=mRNA_7873|Name=jgi.p|Nanoce1779_2|600324|organism=Nannochloropsis oceanica|type=mRNA|length=2590bp
CACCTTCTCAGCGGCCGTGGAGGTGGGGAGGGAGGAGGGGAGAGAAGACG
AGGTGCCAGTGTATGCGGTGTTGAGGGTGATGGATCGGAAAGGAAGAGAG
GAGGTGGGGCAAGGTGTCTTGTGCTTAAGGGAAGTTTTTGAGACGTCGAG
GAGGGGAGGGAAGGAAGGCGTGCCGATCACGATGGATGTGACGAACGGTG
GGAAGTTCATGGGCGTGCTGACGTTACAAGTGGAGGGATGGAAGATGGCC
AGGAAGGGGGAGAAGAGAAGAGGAAGGGTGGAGGAGTGTTGAAAGCTGGA
CAGTGCACAGGTTTCCTGGGAGAGGAGGAAGGGAGGGAGCGCCGTAAAGT
TTGGCCTGGGTGAGGCGGCTTGGATAGAAAAGGCAGACGCTGCTCGGGTG
GAACGTGGTGATGAAAGTATCGGAGGGGAAAAAAGGGCATTTAAAAGATA
TGTTGTGAATATGGGAGGGAGAGAGAATGTAAGTAATTCTGCGTGTCCGG
AGATTGTTTTTGTAACTCGGCGAAATGTGTGCAGCACAGAAAATTGGCAA
AAAGTCGAGACCATCTGACGCACAAATATAGTAAATGCAATTAAATGGAA
AGTATATACAAAAGAGTTGACAAATATTGACGCGGGAAAACAAGAACATT
ACAAATACATTGTTTATTTGTGTTTTTGGTCGGCATGGGCCAGGAGTGGC
GTAGGGCATAGTGTTGGTACTTCGTGTCTGGCTTACGTAGACTGTTGTCG
TTTTTATTGACATTACTGGTAATATATCTGCTTCTGATGCGCGTGTAATG
TATATACCTCTCACTGGTTTTCTTTTGTAGTACTGCTGCATCTATTGACG
GTGCTGGAACGCGAAGTCATGTTCGTCGTTCGGGTTGGCGAGCGTTCAGG
TTTTGTAGCCGCACCAGAGACAAAGAGACTTAAGCATCCTTTCTCATTCA
TGAGGTATGTGCTGGTGATAGGAGGCATCGTCATGGTCTTGTGCTAGACC
GCTCGGCAGCACGCATTATCAAAACGAGGGTTCGATCTCACTTTACCCTC
CCCTACCTTTCACCTTCCCACACTCTTCACACTCAGCGCCAGAGCCATGG
AATCAGACGAGACCAACGATGCGACATTGATGATACCTAATCCTGTCACT
GCGAATGACATTGCCGAAGAACCACCGCCAGCATCGCCCGCAGGAGAGCC
AAGGCCTTTAGAAGATGGGGAGGTTGACGTATCTTCCCCTGCTCAGGTGG
ACGCTGGCGCGGCAGCCACCGCCATGGCTGCGTTGTGGCACCTTCCCATA
CCACACGGTCTGAATTTTGAGGCCTCAAGCGGAACAGCGGTAGTGTGCGA
GAGCATTCAAACCTTTGAAGGCAGCAGCAATAGCAAGACGACGGGGCCTC
GCATATTCAACAACGTCGTCAAAGCCGTGCGTTTCTCCCCAGATGGCACC
TGTCTACTCACTTCGTCCGAAGACCACATCCTCCGTGTGTTTGAAGTCCC
GCATCACCTTGTTTATGATACCCCAACCAGCTTCTCTGTTACTGCTGCCG
CAGCAGCAGATCCCGACAGCAACAGAATCAATAGTACCGTCAATGCTAGC
AACGGTAACGAATGGCAGCCCTGCCTTGCCTGTCCTGAAGGTGAAACTGT
CTATGACCAAACCTGGTACCCCTTGATGAATGCTCGTGCCGATCCTTTGA
CTGCCTGCTTTATCAGCAGCAGTCGCGATCACCCGATTCATTTATGGGAC
GCATTTACCGGCCAAATCCGCGCTTCGTATCGCGCGTACGACCACATGGA
CGAACTGGCCTCGGCGCACTCCTTAGCATTCTCCCCATTTGGCGATAAGA
TTTTTGCGGGCTTTGAGCGGATGGTCCGGGTATTCGATACGGCGACACCG
GGGAAGGACTTCGACGAACGCCCGACGAGGCCGACGAAACGGAGTAGGTG
CGGAGGCCAAAATGGAATTATTTCCACTATTTGTTTCAGTCCTCAGGATG
CAGCGACGGGGATGTATGTGGCCGGATCGTTTGCAGGGTAAGTTTGGTCG
CCAGGTGATGAAAGGAGAGTGGGAAAAAGGGGGCTATGTCTTTGTCTATA
TATCTATATTTTGTTGTTTGTTGTTGTGTTTGTTGATTTGTTGGTGTGGG
TGTGGGTGTGGGGGGGGGGGGTGCCTGCACCTGCGTGTGAATACTTACTT
ATTATTCATGTGCCTGTGTCAACTTCAGCACACGCGTGTGCCAGTCTCAT
TTTACCTTATAATGAGTATCCACAAATTGTACTCTTTCCGTCCTTTCGTT
TCAGATCTATGGCCCTTTACGACTACCGGATGAAAGGCGACGCCCTCCTT
TCCTGGCCTTCTCCACACAATGGTCAAGGGATCACTACTCTCCGTTTATC
GTATGACGGCCGCCTTCTCTTTTCTGGAGCACGCAAGAACGACTGTGTGC
ATTGTTGGGACTTGCGGAAGGGTTCGCTGCTTTCCTCCTTTTGGAGGGAC
GCATCCAGCAATCAGAGACTTGGGATTGATCTCGACCCCGCGGGACGGTA
TATGGCGACTGGGTGTAGGAAGGGAGGGGAAGAAGGGAAA
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protein sequence of jgi.p|Nanoce1779_2|600324

>mRNA_7873-protein ID=mRNA_7873-protein|Name=jgi.p|Nanoce1779_2|600324|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MESDETNDATLMIPNPVTANDIAEEPPPASPAGEPRPLEDGEVDVSSPAQ
VDAGAAATAMAALWHLPIPHGLNFEASSGTAVVCESIQTFEGSSNSKTTG
PRIFNNVVKAVRFSPDGTCLLTSSEDHILRVFEVPHHLVYDTPTSFSVTA
AAAADPDSNRINSTVNASNGNEWQPCLACPEGETVYDQTWYPLMNARADP
LTACFISSSRDHPIHLWDAFTGQIRASYRAYDHMDELASAHSLAFSPFGD
KIFAGFERMVRVFDTATPGKDFDERPTRPTKRSRCGGQNGIISTICFSPQ
DAATGMYVAGSFAG*
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mRNA from alignment at scaffold_22:38905..41494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7873 ID=mRNA_7873|Name=jgi.p|Nanoce1779_2|600324|organism=Nannochloropsis oceanica|type=mRNA|length=2590bp|location=Sequence derived from alignment at scaffold_22:38905..41494- (Nannochloropsis oceanica)
CACCTTCTCAGCGGCCGTGGAGGTGGGGAGGGAGGAGGGGAGAGAAGACG
AGGTGCCAGTGTATGCGGTGTTGAGGGTGATGGATCGGAAAGGAAGAGAG
GAGGTGGGGCAAGGTGTCTTGTGCTTAAGGGAAGTTTTTGAGACGTCGAG
GAGGGGAGGGAAGGAAGGCGTGCCGATCACGATGGATGTGACGAACGGTG
GGAAGTTCATGGGCGTGCTGACGTTACAAGTGGAGGGATGGAAGATGGCC
AGGAAGGGGGAGAAGAGAAGAGGAAGGGTGGAGGAGTGTTGAAAGCTGGA
CAGTGCACAGGTTTCCTGGGAGAGGAGGAAGGGAGGGAGCGCCGTAAAGT
TTGGCCTGGGTGAGGCGGCTTGGATAGAAAAGGCAGACGCTGCTCGGGTG
GAACGTGGTGATGAAAGTATCGGAGGGGAAAAAAGGGCATTTAAAAGATA
TGTTGTGAATATGGGAGGGAGAGAGAATGTAAGTAATTCTGCGTGTCCGG
AGATTGTTTTTGTAACTCGGCGAAATGTGTGCAGCACAGAAAATTGGCAA
AAAGTCGAGACCATCTGACGCACAAATATAGTAAATGCAATTAAATGGAA
AGTATATACAAAAGAGTTGACAAATATTGACGCGGGAAAACAAGAACATT
ACAAATACATTGTTTATTTGTGTTTTTGGTCGGCATGGGCCAGGAGTGGC
GTAGGGCATAGTGTTGGTACTTCGTGTCTGGCTTACGTAGACTGTTGTCG
TTTTTATTGACATTACTGGTAATATATCTGCTTCTGATGCGCGTGTAATG
TATATACCTCTCACTGGTTTTCTTTTGTAGTACTGCTGCATCTATTGACG
GTGCTGGAACGCGAAGTCATGTTCGTCGTTCGGGTTGGCGAGCGTTCAGG
TTTTGTAGCCGCACCAGAGACAAAGAGACTTAAGCATCCTTTCTCATTCA
TGAGGTATGTGCTGGTGATAGGAGGCATCGTCATGGTCTTGTGCTAGACC
GCTCGGCAGCACGCATTATCAAAACGAGGGTTCGATCTCACTTTACCCTC
CCCTACCTTTCACCTTCCCACACTCTTCACACTCAGCGCCAGAGCCATGG
AATCAGACGAGACCAACGATGCGACATTGATGATACCTAATCCTGTCACT
GCGAATGACATTGCCGAAGAACCACCGCCAGCATCGCCCGCAGGAGAGCC
AAGGCCTTTAGAAGATGGGGAGGTTGACGTATCTTCCCCTGCTCAGGTGG
ACGCTGGCGCGGCAGCCACCGCCATGGCTGCGTTGTGGCACCTTCCCATA
CCACACGGTCTGAATTTTGAGGCCTCAAGCGGAACAGCGGTAGTGTGCGA
GAGCATTCAAACCTTTGAAGGCAGCAGCAATAGCAAGACGACGGGGCCTC
GCATATTCAACAACGTCGTCAAAGCCGTGCGTTTCTCCCCAGATGGCACC
TGTCTACTCACTTCGTCCGAAGACCACATCCTCCGTGTGTTTGAAGTCCC
GCATCACCTTGTTTATGATACCCCAACCAGCTTCTCTGTTACTGCTGCCG
CAGCAGCAGATCCCGACAGCAACAGAATCAATAGTACCGTCAATGCTAGC
AACGGTAACGAATGGCAGCCCTGCCTTGCCTGTCCTGAAGGTGAAACTGT
CTATGACCAAACCTGGTACCCCTTGATGAATGCTCGTGCCGATCCTTTGA
CTGCCTGCTTTATCAGCAGCAGTCGCGATCACCCGATTCATTTATGGGAC
GCATTTACCGGCCAAATCCGCGCTTCGTATCGCGCGTACGACCACATGGA
CGAACTGGCCTCGGCGCACTCCTTAGCATTCTCCCCATTTGGCGATAAGA
TTTTTGCGGGCTTTGAGCGGATGGTCCGGGTATTCGATACGGCGACACCG
GGGAAGGACTTCGACGAACGCCCGACGAGGCCGACGAAACGGAGTAGGTG
CGGAGGCCAAAATGGAATTATTTCCACTATTTGTTTCAGTCCTCAGGATG
CAGCGACGGGGATGTATGTGGCCGGATCGTTTGCAGGGTAAGTTTGGTCG
CCAGGTGATGAAAGGAGAGTGGGAAAAAGGGGGCTATGTCTTTGTCTATA
TATCTATATTTTGTTGTTTGTTGTTGTGTTTGTTGATTTGTTGGTGTGGG
TGTGGGTGTGGGGGGGGGGGGTGCCTGCACCTGCGTGTGAATACTTACTT
ATTATTCATGTGCCTGTGTCAACTTCAGCACACGCGTGTGCCAGTCTCAT
TTTACCTTATAATGAGTATCCACAAATTGTACTCTTTCCGTCCTTTCGTT
TCAGATCTATGGCCCTTTACGACTACCGGATGAAAGGCGACGCCCTCCTT
TCCTGGCCTTCTCCACACAATGGTCAAGGGATCACTACTCTCCGTTTATC
GTATGACGGCCGCCTTCTCTTTTCTGGAGCACGCAAGAACGACTGTGTGC
ATTGTTGGGACTTGCGGAAGGGTTCGCTGCTTTCCTCCTTTTGGAGGGAC
GCATCCAGCAATCAGAGACTTGGGATTGATCTCGACCCCGCGGGACGGTA
TATGGCGACTGGGTGTAGGAAGGGAGGGGAAGAAGGGAAA
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Coding sequence (CDS) from alignment at scaffold_22:38905..41494-

>mRNA_7873 ID=mRNA_7873|Name=jgi.p|Nanoce1779_2|600324|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_22:38905..41494- (Nannochloropsis oceanica)
ATGGAATCAGACGAGACCAACGATGCGACATTGATGATACCTAATCCTGT
CACTGCGAATGACATTGCCGAAGAACCACCGCCAGCATCGCCCGCAGGAG
AGCCAAGGCCTTTAGAAGATGGGGAGGTTGACGTATCTTCCCCTGCTCAG
GTGGACGCTGGCGCGGCAGCCACCGCCATGGCTGCGTTGTGGCACCTTCC
CATACCACACGGTCTGAATTTTGAGGCCTCAAGCGGAACAGCGGTAGTGT
GCGAGAGCATTCAAACCTTTGAAGGCAGCAGCAATAGCAAGACGACGGGG
CCTCGCATATTCAACAACGTCGTCAAAGCCGTGCGTTTCTCCCCAGATGG
CACCTGTCTACTCACTTCGTCCGAAGACCACATCCTCCGTGTGTTTGAAG
TCCCGCATCACCTTGTTTATGATACCCCAACCAGCTTCTCTGTTACTGCT
GCCGCAGCAGCAGATCCCGACAGCAACAGAATCAATAGTACCGTCAATGC
TAGCAACGGTAACGAATGGCAGCCCTGCCTTGCCTGTCCTGAAGGTGAAA
CTGTCTATGACCAAACCTGGTACCCCTTGATGAATGCTCGTGCCGATCCT
TTGACTGCCTGCTTTATCAGCAGCAGTCGCGATCACCCGATTCATTTATG
GGACGCATTTACCGGCCAAATCCGCGCTTCGTATCGCGCGTACGACCACA
TGGACGAACTGGCCTCGGCGCACTCCTTAGCATTCTCCCCATTTGGCGAT
AAGATTTTTGCGGGCTTTGAGCGGATGGTCCGGGTATTCGATACGGCGAC
ACCGGGGAAGGACTTCGACGAACGCCCGACGAGGCCGACGAAACGGAGTA
GGTGCGGAGGCCAAAATGGAATTATTTCCACTATTTGTTTCAGTCCTCAG
GATGCAGCGACGGGGATGTATGTGGCCGGATCGTTTGCAGGGTAA
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Synonyms
Publications