jgi.p|Nanoce1779_2|600323, mRNA_7872 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600323
Unique Name	mRNA_7872
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	987
Alignment location	scaffold_22:37918..38904 +

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Properties


Property Name	Value
TranscriptId	600409
Track	FilteredModels2
ProteinId	600323

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:37918..38904 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600323	gene_7872	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600323	mRNA_7872-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7872	CDS_7872	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:37918..38904+
coding sequence from alignment at scaffold_22:37918..38904+

mRNA sequence

>mRNA_7872 ID=mRNA_7872|Name=jgi.p|Nanoce1779_2|600323|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
GGTAGAACAAAGTGGCCGCCAGCAGCAGCAGAAACGCCATCCTTCACGTT
TACCTCCGCGTCCATAACGCACAGTGCCCGTAACTATGTAGATGGTGGTG
GAGTGTAGGATGAGATGGTTAGGAAGAAAAAAGGCCCTTCGGGGTTCGCC
GTTGTCGCGAGTGCCTCTCGCACTTTGAAGTCATGTTGGTGATAAAGTGA
AAGAATAGCTGGACAGCAGCGGCATAGAATTGACATGCTAGTATAGAATT
GACAAGCTAAAGTGTGGGCAGATCTTCGCCTCCTGTAACACGTTATGTAT
GCACGGCCAGAAAAGGGGGAAATGCACGGTGGGCCGGGGAAAGACACGGA
AGCAAAATGTACCCTTCCGACATGTTGGGGTGAATTGATTTCAAAGGACA
CAAACTTACCCTTGCCGGGTGAAATATGAAAAGCATCGTACTTGTTGAGT
GATTTCTCGCACTGGCATTCAAATTTGTGGGTGATGTGACTGTTGGAAGA
GTGGCGTGGGGACGATGTGACCTCATTCACGCTCCAGTGTGGCGCTTGGA
CTTGAGATGCACAGCGAGTGCCACTAACTGCCTCACCAACTTTAGAAGGC
CGCAGCTAACCAGTTCCATAAAATCAAAGTAAGAGTGTAGGATCTTGCGA
TGCGCGGATCACAGCTTTTTCATTCTCTCTTCCTGTCAACTTTGTTTTGT
ACATGTTACTTTTACTCCCCTTCCCCCTCTCCAACCTCCCCCTTCTGCGC
TCCAGCCAGTGGCACCTGGAATAGACGCACCCCACTCCGCCTCCTCGCTT
TCTGCTTCTCAACAACCATCTCATCCTCCTCATTATCCTCGTGCTCTACA
TCAAAGTGCCTCTCTCCCATTCCAGCCGCCACTAAACCCGCATACGGGTG
AAAGCTCACATCACTCACCGTGTCCTCCATCAGCCCCAGCCCTCCCACCT
CCTGCCCTGTGCTCAAATCATATACCAATGCCCCCCT

protein sequence of jgi.p|Nanoce1779_2|600323

>mRNA_7872-protein ID=mRNA_7872-protein|Name=jgi.p|Nanoce1779_2|600323|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MRGSQLFHSLFLSTLFCTCYFYSPSPSPTSPFCAPASGTWNRRTPLRLLA
FCFSTTISSSSLSSCSTSKCLSPIPAATKPAYG*

mRNA from alignment at scaffold_22:37918..38904+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7872 ID=mRNA_7872|Name=jgi.p|Nanoce1779_2|600323|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_22:37918..38904+ (Nannochloropsis oceanica)
GGTAGAACAAAGTGGCCGCCAGCAGCAGCAGAAACGCCATCCTTCACGTT
TACCTCCGCGTCCATAACGCACAGTGCCCGTAACTATGTAGATGGTGGTG
GAGTGTAGGATGAGATGGTTAGGAAGAAAAAAGGCCCTTCGGGGTTCGCC
GTTGTCGCGAGTGCCTCTCGCACTTTGAAGTCATGTTGGTGATAAAGTGA
AAGAATAGCTGGACAGCAGCGGCATAGAATTGACATGCTAGTATAGAATT
GACAAGCTAAAGTGTGGGCAGATCTTCGCCTCCTGTAACACGTTATGTAT
GCACGGCCAGAAAAGGGGGAAATGCACGGTGGGCCGGGGAAAGACACGGA
AGCAAAATGTACCCTTCCGACATGTTGGGGTGAATTGATTTCAAAGGACA
CAAACTTACCCTTGCCGGGTGAAATATGAAAAGCATCGTACTTGTTGAGT
GATTTCTCGCACTGGCATTCAAATTTGTGGGTGATGTGACTGTTGGAAGA
GTGGCGTGGGGACGATGTGACCTCATTCACGCTCCAGTGTGGCGCTTGGA
CTTGAGATGCACAGCGAGTGCCACTAACTGCCTCACCAACTTTAGAAGGC
CGCAGCTAACCAGTTCCATAAAATCAAAGTAAGAGTGTAGGATCTTGCGA
TGCGCGGATCACAGCTTTTTCATTCTCTCTTCCTGTCAACTTTGTTTTGT
ACATGTTACTTTTACTCCCCTTCCCCCTCTCCAACCTCCCCCTTCTGCGC
TCCAGCCAGTGGCACCTGGAATAGACGCACCCCACTCCGCCTCCTCGCTT
TCTGCTTCTCAACAACCATCTCATCCTCCTCATTATCCTCGTGCTCTACA
TCAAAGTGCCTCTCTCCCATTCCAGCCGCCACTAAACCCGCATACGGGTG
AAAGCTCACATCACTCACCGTGTCCTCCATCAGCCCCAGCCCTCCCACCT
CCTGCCCTGTGCTCAAATCATATACCAATGCCCCCCT

Coding sequence (CDS) from alignment at scaffold_22:37918..38904+

>mRNA_7872 ID=mRNA_7872|Name=jgi.p|Nanoce1779_2|600323|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_22:37918..38904+ (Nannochloropsis oceanica)
ATGCGCGGATCACAGCTTTTTCATTCTCTCTTCCTGTCAACTTTGTTTTG
TACATGTTACTTTTACTCCCCTTCCCCCTCTCCAACCTCCCCCTTCTGCG
CTCCAGCCAGTGGCACCTGGAATAGACGCACCCCACTCCGCCTCCTCGCT
TTCTGCTTCTCAACAACCATCTCATCCTCCTCATTATCCTCGTGCTCTAC
ATCAAAGTGCCTCTCTCCCATTCCAGCCGCCACTAAACCCGCATACGGGT
GA

Synonyms

Publications