jgi.p|Nanoce1779_2|600322, mRNA_7871 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600322
Unique NamemRNA_7871
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length652
Alignment locationscaffold_22:37331..37982 -

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Properties
Property NameValue
TranscriptId600408
TrackFilteredModels2
ProteinId600322
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:37331..37982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600322gene_7871Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7871CDS_7871Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600322mRNA_7871-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7871 ID=mRNA_7871|Name=jgi.p|Nanoce1779_2|600322|organism=Nannochloropsis oceanica|type=mRNA|length=652bp
ATGGACGCGGAGGTAAACGTGAAGGATGGCGTTTCTGCTGCTGCTGGCGG
CCACTTTGTTCTACCTCCACCTCTTCCTCCTGCGCTGCCTCTCCTCCTCA
CCTTGCCCGACCTCTCCGAGGCCCCACCACCTGCCTACCAGATGCACGTT
ACCGCCACCCTCACCTATCTCGACGACCTACTGAAGCGCCACCCAAATCC
TACTCGAGAGTCTCTGGCCCTGGTCTTTGCTTTCGCCCGACGCGTTTTCG
CCCAGCAGCAACATTCCCCCTGGAGGGCACAAGGAGGAGCAGAAGGCGAC
GCTGCCTTTGCTGCTTGCATGGATGGGATCCTCAACATCTTACCTCGCTT
CCTCGAGCCCATGGGTAAAACCACATGGCTGTATCCTTATCCTCTTTCCC
CTGCATCTACCGCCAGTTCCTCCTCTTCTCTTCCTCCCTCCTCCTCATCG
CCCTACAATAAAGACCGTCTAGACTGCCTCTCCTTCGCCTGCAGCGAACT
CCTCGCTCTCGATAGTCACGTCTACGGAGACACGCGCAAATTAATGCTCG
TGTGGAAACATCTGGTTAGTCTTGCCACTGCCCACTCACATTCCCCAGCC
CTCGCCTCCCTCATGGTGGCTGGAGGAAGAGGAGGAGGAGGAGGAGGAGA
AA
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protein sequence of jgi.p|Nanoce1779_2|600322

>mRNA_7871-protein ID=mRNA_7871-protein|Name=jgi.p|Nanoce1779_2|600322|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MDAEVNVKDGVSAAAGGHFVLPPPLPPALPLLLTLPDLSEAPPPAYQMHV
TATLTYLDDLLKRHPNPTRESLALVFAFARRVFAQQQHSPWRAQGGAEGD
AAFAACMDGILNILPRFLEPMGKTTWLYPYPLSPASTASSSSSLPPSSSS
PYNKDRLDCLSFACSELLALDSHVYGDTRKLMLVWKHLVSLATAHSHSPA
LASLMVAGGRGGGGGGE
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mRNA from alignment at scaffold_22:37331..37982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7871 ID=mRNA_7871|Name=jgi.p|Nanoce1779_2|600322|organism=Nannochloropsis oceanica|type=mRNA|length=652bp|location=Sequence derived from alignment at scaffold_22:37331..37982- (Nannochloropsis oceanica)
ATGGACGCGGAGGTAAACGTGAAGGATGGCGTTTCTGCTGCTGCTGGCGG
CCACTTTGTTCTACCTCCACCTCTTCCTCCTGCGCTGCCTCTCCTCCTCA
CCTTGCCCGACCTCTCCGAGGCCCCACCACCTGCCTACCAGATGCACGTT
ACCGCCACCCTCACCTATCTCGACGACCTACTGAAGCGCCACCCAAATCC
TACTCGAGAGTCTCTGGCCCTGGTCTTTGCTTTCGCCCGACGCGTTTTCG
CCCAGCAGCAACATTCCCCCTGGAGGGCACAAGGAGGAGCAGAAGGCGAC
GCTGCCTTTGCTGCTTGCATGGATGGGATCCTCAACATCTTACCTCGCTT
CCTCGAGCCCATGGGTAAAACCACATGGCTGTATCCTTATCCTCTTTCCC
CTGCATCTACCGCCAGTTCCTCCTCTTCTCTTCCTCCCTCCTCCTCATCG
CCCTACAATAAAGACCGTCTAGACTGCCTCTCCTTCGCCTGCAGCGAACT
CCTCGCTCTCGATAGTCACGTCTACGGAGACACGCGCAAATTAATGCTCG
TGTGGAAACATCTGGTTAGTCTTGCCACTGCCCACTCACATTCCCCAGCC
CTCGCCTCCCTCATGGTGGCTGGAGGAAGAGGAGGAGGAGGAGGAGGAGA
AA
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Coding sequence (CDS) from alignment at scaffold_22:37331..37982-

>mRNA_7871 ID=mRNA_7871|Name=jgi.p|Nanoce1779_2|600322|organism=Nannochloropsis oceanica|type=CDS|length=652bp|location=Sequence derived from alignment at scaffold_22:37331..37982- (Nannochloropsis oceanica)
ATGGACGCGGAGGTAAACGTGAAGGATGGCGTTTCTGCTGCTGCTGGCGG
CCACTTTGTTCTACCTCCACCTCTTCCTCCTGCGCTGCCTCTCCTCCTCA
CCTTGCCCGACCTCTCCGAGGCCCCACCACCTGCCTACCAGATGCACGTT
ACCGCCACCCTCACCTATCTCGACGACCTACTGAAGCGCCACCCAAATCC
TACTCGAGAGTCTCTGGCCCTGGTCTTTGCTTTCGCCCGACGCGTTTTCG
CCCAGCAGCAACATTCCCCCTGGAGGGCACAAGGAGGAGCAGAAGGCGAC
GCTGCCTTTGCTGCTTGCATGGATGGGATCCTCAACATCTTACCTCGCTT
CCTCGAGCCCATGGGTAAAACCACATGGCTGTATCCTTATCCTCTTTCCC
CTGCATCTACCGCCAGTTCCTCCTCTTCTCTTCCTCCCTCCTCCTCATCG
CCCTACAATAAAGACCGTCTAGACTGCCTCTCCTTCGCCTGCAGCGAACT
CCTCGCTCTCGATAGTCACGTCTACGGAGACACGCGCAAATTAATGCTCG
TGTGGAAACATCTGGTTAGTCTTGCCACTGCCCACTCACATTCCCCAGCC
CTCGCCTCCCTCATGGTGGCTGGAGGAAGAGGAGGAGGAGGAGGAGGAGA
AA
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Synonyms
Publications