jgi.p|Nanoce1779_2|574135, mRNA_787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574135
Unique NamemRNA_787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1157
Alignment locationscaffold_2:432985..434672 -

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Properties
Property NameValue
TranscriptId574221
TrackFilteredModels2
ProteinId574135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:432985..434672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574135gene_787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574135mRNA_787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_787CDS_787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_787 ID=mRNA_787|Name=jgi.p|Nanoce1779_2|574135|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp
CAGGAAACCATGAACTCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTAC
CATCCTGGCCAAGGGAACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGC
AGGTCCTATCCACGCGCAAGATAGTCGTCTTTGGGGAGCTGTTGGCCATG
CAGAGCATGCAAGCGTTACGGGGTACGGAGCATGAGCCCTCCCTTAAGCT
TCTGGAGATTTTTGCCTACGGGACCTATGCCGACTATCAGAACCAACGCA
CGACCGCTAATCTTCCCGAGCTGACGACGCCGCAGCTCCGCAAGCTCCGG
CTGTTGACCATGCTGACCTTGGCACACAAGCACGAGAGCATCCCTTACGC
CACCCTCTTCCAAGCACTCGGCCTTGACGGCAATGTCCGCGAGGTCGAAG
ACCTGATCATTGAGGCCATATACATGGGCTTTCTATCCGGGAGGTTGGAT
CAACGCCGCGGCCTGTTTCGAGTGAAGGGCGCAGTGGGACGGGATGTGCG
TTTGGAGGACGTGGAGGGTATGATCGGCAAGCTGCGGAAGTGGTGAGTTC
GGGATGGAGGGGAGGGGTGAGAAGGGATGGTTGGGTCAGGAAGAAGGAGA
AGCAGAATATCTGCCGTGCCTCTTTGTCCTTATGTGATTCTTACGTGCCT
CCTTTCTGATGTGATTCTTGCATGCCTCCTTCCTTGTGATTCTTACATGC
CTTCTTTCTTCCACCAGGTTAGGAAACGCTGAGATGCTGCTGGAGAATTT
TGAAGAGCGCATGCGGTATGTTAATTTCTCGTTTTTCTTCTCGAGGCTCG
GTCGGTGGATCGGTATTGGTTGTTTTTGTCTTTCTTTCTCACGTCTGCAT
CAAATGGGACAGTGCGGCTACAGTCCTAAATATTCTGAATGACATGCTTT
GGGAAGCCTTACCTCTCACTTCTCACATTTCCTCCCCCGTTTCCCTCCCT
CCTTTCATCCCTTTTCATCAGCGACATCCACGCTGGCCGCGCCGAACTGC
AGCAGCAACGGCACAAGTACGTCCAGCAGTTCGAGCAAGTCAAGACCCAA
TTAAACACAGGAGTGCAGCCGTATCGAGGAGGAGGGGGAGGAGGAGGAGG
GGTGGGTGGTTTTGACGGGATGGACGGGTACGATGACATTGAGGCGTTCT
TCCCCGG
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protein sequence of jgi.p|Nanoce1779_2|574135

>mRNA_787-protein ID=mRNA_787-protein|Name=jgi.p|Nanoce1779_2|574135|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MNSDAGAGALEQFTILAKGTKGNGCAALIQQVLSTRKIVVFGELLAMQSM
QALRGTEHEPSLKLLEIFAYGTYADYQNQRTTANLPELTTPQLRKLRLLT
MLTLAHKHESIPYATLFQALGLDGNVREVEDLIIEAIYMGFLSGRLDQRR
GLFRVKGAVGRDVRLEDVEGMIGKLRKW*
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mRNA from alignment at scaffold_2:432985..434672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_787 ID=mRNA_787|Name=jgi.p|Nanoce1779_2|574135|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at scaffold_2:432985..434672- (Nannochloropsis oceanica)
CAGGAAACCATGAACTCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTAC
CATCCTGGCCAAGGGAACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGC
AGGTAAGGGACTAGCTTCGAGAGGGAGGAGGGGAAGGAGGGTGGGAAGGG
AGGGAGGAGCCGCCCGCAGTCGCAGAGCAAGGAAAGGAGACGACGAACCA
CACAACTCATCGCAACCCACGCCCTGTCCTTCCTCCCCTAAAAAGGTCCT
ATCCACGCGCAAGATAGTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCA
TGCAAGCGGTACGTGTAAATGGTGCTTTGCCCCTCCTCAATATACCTATT
CCTCATGGTTATAAATATATATATATATACAGTTACGGGGTACGGAGCAT
GAGCCCTCCCTTAAGCTTCTGGAGATTTTTGCCTACGGGACCTATGCCGA
CTATCAGAGTATGTGGGCCTTGATCGTTCTTGGTCCTTCCTCCCCTCCCC
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCCCCCT
TGTGCCAAAGGCATGAACACGCGCACCCATACTCCTTGTTATTTAAATTT
GTAACCCATAGACCAACGCACGACCGCTAATCTTCCCGAGCTGACGACGC
CGCAGCTCCGCAAGCTCCGGCTGTTGACCATGCTGACCTTGGCACACAAG
CACGAGGTAAAGGAGAAGGAGGGAGGGAAAGAGGGACGGAAGAAGAAGAA
ACACCTGCGTCTTGCATTTCCCGACAGAGAAAAAAATATCGTCATAAGTG
AAAACCATGAAAAGAAAAATCGACATCCATCATCACCCTCTCAAACACTC
ACAACAACCACCAACAGAGCATCCCTTACGCCACCCTCTTCCAAGCACTC
GGCCTTGACGGCAATGTCCGCGAGGTCGAAGACCTGATCATTGAGGCCAT
ATACATGGGCTTTCTATCCGGGAGGTTGGATCAACGCCGCGGCCTGTTTC
GAGTGAAGGGCGCAGTGGGACGGGATGTGCGTTTGGAGGACGTGGAGGGT
ATGATCGGCAAGCTGCGGAAGTGGTGAGTTCGGGATGGAGGGGAGGGGTG
AGAAGGGATGGTTGGGTCAGGAAGAAGGAGAAGCAGAATATCTGCCGTGC
CTCTTTGTCCTTATGTGATTCTTACGTGCCTCCTTTCTGATGTGATTCTT
GCATGCCTCCTTCCTTGTGATTCTTACATGCCTTCTTTCTTCCACCAGGT
TAGGAAACGCTGAGATGCTGCTGGAGAATTTTGAAGAGCGCATGCGGTAT
GTTAATTTCTCGTTTTTCTTCTCGAGGCTCGGTCGGTGGATCGGTATTGG
TTGTTTTTGTCTTTCTTTCTCACGTCTGCATCAAATGGGACAGTGCGGCT
ACAGTCCTAAATATTCTGAATGACATGCTTTGGGAAGCCTTACCTCTCAC
TTCTCACATTTCCTCCCCCGTTTCCCTCCCTCCTTTCATCCCTTTTCATC
AGCGACATCCACGCTGGCCGCGCCGAACTGCAGCAGCAACGGCACAAGTA
CGTCCAGCAGTTCGAGCAAGTCAAGACCCAATTAAACACAGGAGTGCAGC
CGTATCGAGGAGGAGGGGGAGGAGGAGGAGGGGTGGGTGGTTTTGACGGG
ATGGACGGGTACGATGACATTGAGGCGTTCTTCCCCGG
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Coding sequence (CDS) from alignment at scaffold_2:432985..434672-

>mRNA_787 ID=mRNA_787|Name=jgi.p|Nanoce1779_2|574135|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at scaffold_2:432985..434672- (Nannochloropsis oceanica)
AGCATCCCTTACGCCACCCTCTTCCAAGCACTCGGCCTTGACGGCAATGT
CCGCGAGGTCGAAGACCTGATCATTGAGGCCATATACATGGGCTTTCTAT
CCGGGAGGTTGGATCAACGCCGCGGCCTGTTTCGAGTGAAGGGCGCAGTG
GGACGGGATGTGCGTTTGGAGGACGTGGAGGGTATGATCGGCAAGCTGCG
GAAGTGGTGAACCAACGCACGACCGCTAATCTTCCCGAGCTGACGACGCC
GCAGCTCCGCAAGCTCCGGCTGTTGACCATGCTGACCTTGGCACACAAGC
ACGAGTTACGGGGTACGGAGCATGAGCCCTCCCTTAAGCTTCTGGAGATT
TTTGCCTACGGGACCTATGCCGACTATCAGAGTCCTATCCACGCGCAAGA
TAGTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCATGCAAGCGATGAAC
TCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTACCATCCTGGCCAAGGG
AACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGCAGAGCATCCCTTACG
CCACCCTCTTCCAAGCACTCGGCCTTGACGGCAATGTCCGCGAGGTCGAA
GACCTGATCATTGAGGCCATATACATGGGCTTTCTATCCGGGAGGTTGGA
TCAACGCCGCGGCCTGTTTCGAGTGAAGGGCGCAGTGGGACGGGATGTGC
GTTTGGAGGACGTGGAGGGTATGATCGGCAAGCTGCGGAAGTGGTGAACC
AACGCACGACCGCTAATCTTCCCGAGCTGACGACGCCGCAGCTCCGCAAG
CTCCGGCTGTTGACCATGCTGACCTTGGCACACAAGCACGAGTTACGGGG
TACGGAGCATGAGCCCTCCCTTAAGCTTCTGGAGATTTTTGCCTACGGGA
CCTATGCCGACTATCAGAGTCCTATCCACGCGCAAGATAGTCGTCTTTGG
GGAGCTGTTGGCCATGCAGAGCATGCAAGCGATGAACTCGGACGCGGGCG
CGGGGGCCTTGGAGCAGTTTACCATCCTGGCCAAGGGAACAAAAGGAAAT
GGCTGTGCGGCGCTCATCCAGCAGAGCATCCCTTACGCCACCCTCTTCCA
AGCACTCGGCCTTGACGGCAATGTCCGCGAGGTCGAAGACCTGATCATTG
AGGCCATATACATGGGCTTTCTATCCGGGAGGTTGGATCAACGCCGCGGC
CTGTTTCGAGTGAAGGGCGCAGTGGGACGGGATGTGCGTTTGGAGGACGT
GGAGGGTATGATCGGCAAGCTGCGGAAGTGGTGAACCAACGCACGACCGC
TAATCTTCCCGAGCTGACGACGCCGCAGCTCCGCAAGCTCCGGCTGTTGA
CCATGCTGACCTTGGCACACAAGCACGAGTTACGGGGTACGGAGCATGAG
CCCTCCCTTAAGCTTCTGGAGATTTTTGCCTACGGGACCTATGCCGACTA
TCAGAGTCCTATCCACGCGCAAGATAGTCGTCTTTGGGGAGCTGTTGGCC
ATGCAGAGCATGCAAGCGATGAACTCGGACGCGGGCGCGGGGGCCTTGGA
GCAGTTTACCATCCTGGCCAAGGGAACAAAAGGAAATGGCTGTGCGGCGC
TCATCCAGCAGAGCATCCCTTACGCCACCCTCTTCCAAGCACTCGGCCTT
GACGGCAATGTCCGCGAGGTCGAAGACCTGATCATTGAGGCCATATACAT
GGGCTTTCTATCCGGGAGGTTGGATCAACGCCGCGGCCTGTTTCGAGTGA
AGGGCGCAGTGGGACGGGATGTGCGTTTGGAGGACGTGGAGGGTATGATC
GGCAAGCTGCGGAAGTGGTGAACCAACGCACGACCGCTAATCTTCCCGAG
CTGACGACGCCGCAGCTCCGCAAGCTCCGGCTGTTGACCATGCTGACCTT
GGCACACAAGCACGAGTTACGGGGTACGGAGCATGAGCCCTCCCTTAAGC
TTCTGGAGATTTTTGCCTACGGGACCTATGCCGACTATCAGAGTCCTATC
CACGCGCAAGATAGTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCATGC
AAGCGATGAACTCGGACGCGGGCGCGGGGGCCTTGGAGCAGTTTACCATC
CTGGCCAAGGGAACAAAAGGAAATGGCTGTGCGGCGCTCATCCAGCAGAG
CATCCCTTACGCCACCCTCTTCCAAGCACTCGGCCTTGACGGCAATGTCC
GCGAGGTCGAAGACCTGATCATTGAGGCCATATACATGGGCTTTCTATCC
GGGAGGTTGGATCAACGCCGCGGCCTGTTTCGAGTGAAGGGCGCAGTGGG
ACGGGATGTGCGTTTGGAGGACGTGGAGGGTATGATCGGCAAGCTGCGGA
AGTGGTGAACCAACGCACGACCGCTAATCTTCCCGAGCTGACGACGCCGC
AGCTCCGCAAGCTCCGGCTGTTGACCATGCTGACCTTGGCACACAAGCAC
GAGTTACGGGGTACGGAGCATGAGCCCTCCCTTAAGCTTCTGGAGATTTT
TGCCTACGGGACCTATGCCGACTATCAGAGTCCTATCCACGCGCAAGATA
GTCGTCTTTGGGGAGCTGTTGGCCATGCAGAGCATGCAAGCGATGAACTC
GGACGCGGGCGCGGGGGCCTTGGAGCAGTTTACCATCCTGGCCAAGGGAA
CAAAAGGAAATGGCTGTGCGGCGCTCATCCAGCAG
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Synonyms
Publications