jgi.p|Nanoce1779_2|545766, mRNA_7868 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|545766
Unique Name	mRNA_7868
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3128
Alignment location	scaffold_22:28487..31963 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	545852
Track	FilteredModels2
ProteinId	545766

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:28487..31963 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545766	gene_7868	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545766	mRNA_7868-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7868	CDS_7868	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:28487..31963-
coding sequence from alignment at scaffold_22:28487..31963-

mRNA sequence

>mRNA_7868 ID=mRNA_7868|Name=jgi.p|Nanoce1779_2|545766|organism=Nannochloropsis oceanica|type=mRNA|length=3128bp
GGTTGGGGTGGGGGGTGGCAGGGGCGGCGTGGGCGACGGTCATTGCACAG
TACGTGGGAATTGCCGCGTATATGTGCTTGTTGTTTGGGAAAGGCACGAC
GAGTCCATTGTACAGGAAACAGGGGGGAAAGAAGGTGGAGGGGATGGGGG
TGGGGGTGGTGCCAGTAATGGAGGAGGGGATGAGCAAGCGACGGTGGAGG
GATGATGAAGAGGAGAGGCGAAAATCGAGACGATCCATTACAAAGAAGAA
GGAGGGGCAGGACAGCGGCGTGGGTACCAGCACGACCGCCGCCGCCGGCC
GTAGTATCGATGCCAAGCCCCTCGCCTCTTTCCTCTTCTCCTTCGTATCT
GGCGCCCTACCGACGTTTCTCCAACTTCTCAAGGCTAACGGTGCCATGCT
TATCCGTAACGGCACCCTCATGCTGGTCTGGGCCTATGCCACCGCCACGG
CCACGCGCATGTCGACGTTGGACGTGGCGGCGCACCAGGTCGCTCTGTCG
ATCTGGCTTTTCTTCGCCTTGGTCTCCGAAGCTCCCGGTATTGCCGCACA
AGTCATGGCGGCACGCCTGTATTCCACTCGGAATCTCGCCGCGCTTCGCT
CCCTCGCGCAACGCCTTGCGTCCCTTGGCCTCTCCTTGGGTCTTGGGCTG
GGGGGGATGTTGATCGTCCTCCGTCGGTCCCTCCCTCCATTGTTTGCCTC
CGACACCCAGGTACTCGCGAAGGTGAGCGAACTGATGATGTTGCTGGGAG
CACAACTGCCCTTGGTGGCTCTCACTTTAATCGGAGAGTCCTTCCTTGTG
GGCTGTGGGAAGTTTGGAGCGTTGGCCTTGTGCAGCACTTTGACGAGTGG
CGTGTGTGCCCTGGTTCTGCGGTGGTTGGGGCGAGGGGGTGGGGGGGGCG
GAGGAGGGGTGGTTTATATCTGGTGGGCGATCAAGGGACTATTTGTGATG
CGCTTGACGTGTGTGGCGTGGTTGATGTATAATCCCTGGAAAGGGGCGCT
GAGTGGGAAGGGGAGTTGGAGGAGGGGAGGGAAGGGAGGGAAGGAGGAGG
AGTTGCCTCCTCCTCCTCGACTGCTGCTGGTTGAGTAGGAAGGAATCAAG
GAGGGCAAGAGGGGAGGGAGAGAGAGTACAAGAGACAAAATAATTTGTGA
CATGGGCCTTATGTAGGCCATTGATGCGCGCATGCCTGGAAAAATGGTTG
TAGACTAGTAATCGAAAAGCGCTGGCGAGAAGGAGGTTGGGAGGGAGGAA
GGTCAGAGAATAGAGGGAAATAACGAGAAGTAAGTGAAAATGACAAGAAA
TACATACCAATCTGTTAAATCGCGGGCCCAATGTCCGCGGTATATGGGTG
GACGTATGGGTGTGTATTTTGTGCTCGCGTGTGCGCGCGTGTGTGTCGCG
TTTGCCCCAGGATTCCGTCGTCCCTTTACATCATATTGAGATGGATGACT
CGTGTAAAGAACCAAGTAGTGATAAAGAAAATAACTCAAGATTCGCTTTA
ATCAATGAGGAACTCGCACAGGACGCAGGACTCTCGCCTTGATGGCTTTC
GCGTGCTCATTCGATTTCTTTGGAGCAACCTCCTCCCCAATCCAAGATCA
TACATGCTAGACAAATAATAAACTCTGGTTTGCCAGAGATTTTCCTTGAT
ATCCGACCAATCCGCATATGTACCATAGCCGGGCGATGAAAAGAAATTTC
GGGTGTTTGCTCTGATGCATCAAAAAGGCAGGCGGAGGAAAGCAAAATGG
ACGATGGAGTTGGGGGGAAGGATGGTCGTCGCTTGCCTCCATAGGGGAAA
CAAAAGCAAGGCACTGCTACACGGGAAAAAGTAGAATTTTCGATCATTGC
ACACTTTAATTTTCACTACATGCCAATTTTCCTTCACGTGTTGTAATCAC
GTCTACTACGTGTCCATCATTTGAAACGGCTCTCGCCGCAGAAAGTGGAG
AAGACTCGCTCCTTCTGGCTCATGCCTTGTTCGCAACAGCCACCATTACT
CCCGCAGGCCTACACGCACCCATCAGGGTACCGTAATTGAGTTGGTGCAC
CATCACCGATGCCTGGAATTATGTGGGGGAGTTAATGTCCGGGGGAGAGG
GGAGAGTGCTGGGAGAGACGCAAACGCCCCTCATCATGGGCACACCGTCA
TCCTCAATCCATCATTCCGGGGAAGACCACCTCTTCCTCTGTCCGCCCTT
TTATGGTGGCAGGCCAGGCACACACGCAGGCATAGAGCGAGTATGCCTGC
CTTCTGCACAGCTACTTGACAATAGCGTGCATGGCTAAAGCACTGCCAAA
TCACTTTTCCATTCTCACAGACGGCCACCCCTCCCACCCTCTCTACACAA
CACTCACCCTTCACCCTTCCTTGCACCGACAGGTTCACATCCACCTTGGG
AGGGGCAGCAACAACACACAGCAGCATCAGTACCAGGCAGGAGCGAGATG
CAAAACATCAAGTGTGTGGTGGTTGGGGATGGGGCGGTCGGTAAGACATG
CTTGCTGATTTCCTACACTACCAACTCCTTTCCCGGCGAGTACATTCCGA
CGGTGTTCGATAATTACAGCGCCAACGTAATGGTGGATGGTAAGCCCATT
AATTTGGGCCTATGGGACACGGCCGGGCAAGAAGACTACGACCGGCTCCG
TCCTCTGTCCTACCCACAGACGGACGTGTTCCTCCTGTGCTTCGCCGTGT
CCTCCCCCTCGTCCTTCGAGAATATCAAGAACAAGTGGTACCCCGAAATA
AAACACCACGCTCCCGGTGTGCCCTTCATCCTCGTTGGCACCAAGACGGA
TTTGCGGAAGGTGCGTTGTCTGCCTTTCCTCCTCCCCTCCCTCCCTTCCT
CCTTCCCTCCCTCCTTCCTTTCCTCCCTCTATCTCTCCCCCTCACCCTTG
TGCGCGCCAAGACAAACATTCCAATAGGTGTATTTTTCTCCAATCCCCCC
TTCCTCCCTCCCTCATTTGTCTTAATTTTTCCTCTTCTCCTTCTGGCTCA
TTACACATGCAGTGGAACTTACTAGGCTGATTTCCCCTTCCTCCCTTCCT
CCTCCCCTCCCTCCCTCCTTCTCCCCCTTAGGACGCCGACTTTGCCCGAA
AGCAAAAATTGGTGACAGCGGAGCAAGG

protein sequence of jgi.p|Nanoce1779_2|545766

>mRNA_7868-protein ID=mRNA_7868-protein|Name=jgi.p|Nanoce1779_2|545766|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MCLLFGKGTTSPLYRKQGGKKVEGMGVGVVPVMEEGMSKRRWRDDEEERR
KSRRSITKKKEGQDSGVGTSTTAAAGRSIDAKPLASFLFSFVSGALPTFL
QLLKANGAMLIRNGTLMLVWAYATATATRMSTLDVAAHQVALSIWLFFAL
VSEAPGIAAQVMAARLYSTRNLAALRSLAQRLASLGLSLGLGLGGMLIVL
RRSLPPLFASDTQVLAKVSELMMLLGAQLPLVALTLIGESFLVGCGKFGA
LALCSTLTSGVCALVLRWLGRGGGGGGGGVVYIWWAIKGLFVMRLTCVAW
LMYNPWKGALSGKGSWRRGGKGGKEEELPPPPRLLLVE*

mRNA from alignment at scaffold_22:28487..31963-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7868 ID=mRNA_7868|Name=jgi.p|Nanoce1779_2|545766|organism=Nannochloropsis oceanica|type=mRNA|length=3477bp|location=Sequence derived from alignment at scaffold_22:28487..31963- (Nannochloropsis oceanica)
GGTTGGGGTGGGGGGTGGCAGGGGCGGCGTGGGCGACGGTCATTGCACAG
TACGTGGGAATTGCCGCGTATATGTGCTTGTTGTTTGGGAAAGGCACGAC
GAGTCCATTGTACAGGAAACAGGGGGGAAAGAAGGTGGAGGGGATGGGGG
TGGGGGTGGTGCCAGTAATGGAGGAGGGGATGAGCAAGCGACGGTGGAGG
GATGATGAAGAGGAGAGGCGAAAATCGAGACGATCCATTACAAAGAAGAA
GGAGGGGCAGGACAGCGGCGTGGGTACCAGCACGACCGCCGCCGCCGGCC
GTAGTATCGATGCCAAGCCCCTCGCCTCTTTCCTCTTCTCCTTCGTATCT
GGCGCCCTACCGACGTTTCTCCAACTTCTCAAGGCTAACGGTGCCATGCT
TATCCGTAACGGCACCCTCATGCTGGTCTGGGCCTATGCCACCGCCACGG
CCACGCGCATGTCGACGTTGGACGTGGCGGCGCACCAGGTCGCTCTGTCG
ATCTGGCTTTTCTTCGCCTTGGTCTCCGAAGCTCCCGGTATTGCCGCACA
AGTCATGGCGGCACGCCTGTATTCCACTCGGAATCTCGCCGCGCTTCGCT
CCCTCGCGCAACGCCTTGCGTCCCTTGGCCTCTCCTTGGGTCTTGGGCTG
GGGGGGATGTTGATCGTCCTCCGTCGGTCCCTCCCTCCATTGTTTGCCTC
CGACACCCAGGTACTCGCGAAGGTGAGCGAACTGATGATGTTGCTGGGAG
CACAACTGCCCTTGGTGGCTCTCACTTTAATCGGAGAGTCCTTCCTTGTG
GGCTGTGGGAAGTTTGGAGCGTTGGCCTTGTGCAGCACTTTGACGAGTGG
CGTGTGTGCCCTGGTTCTGCGGTGGTTGGGGCGAGGGGGTGGGGGGGGCG
GAGGAGGGGTGGTTTATATCTGGTGGGCGATCAAGGGACTATTTGTGATG
CGCTTGACGTGTGTGGCGTGGTTGATGTATAATCCCTGGAAAGGGGCGCT
GAGTGGGAAGGGGAGTTGGAGGAGGGGAGGGAAGGGAGGGAAGGAGGAGG
AGTTGCCTCCTCCTCCTCGACTGCTGCTGGTTGAGTAGGAAGGAATCAAG
GAGGGCAAGAGGGGAGGGAGAGAGAGTACAAGAGACAAAATAATTTGTGA
CATGGGCCTTATGTAGGCCATTGATGCGCGCATGCCTGGAAAAATGGTTG
TAGACTAGTAATCGAAAAGCGCTGGCGAGAAGGAGGTTGGGAGGGAGGAA
GGTCAGAGAATAGAGGGAAATAACGAGAAGTAAGTGAAAATGACAAGAAA
TACATACCAATCTGTTAAATCGCGGGCCCAATGTCCGCGGTATATGGGTG
GACGTATGGGTGTGTATTTTGTGCTCGCGTGTGCGCGCGTGTGTGTCGCG
TTTGCCCCAGGATTCCGTCGTCCCTTTACATCATATTGAGATGGATGACT
CGTGTAAAGAACCAAGTAGTGATAAAGAAAATAACTCAAGATTCGCTTTA
ATCAATGAGGAACTCGCACAGGACGCAGGACTCTCGCCTTGATGGCTTTC
GCGTGCTCATTCGATTTCTTTGGAGCAACCTCCTCCCCAATCCAAGATCA
TACATGCTAGACAAATAATAAACTCTGGTTTGCCAGAGATTTTCCTTGAT
ATCCGACCAATCCGCATATGTACCATAGCCGGGCGATGAAAAGAAATTTC
GGGTGTTTGCTCTGATGCATCAAAAAGGCAGGCGGAGGAAAGCAAAATGG
ACGATGGAGTTGGGGGGAAGGATGGTCGTCGCTTGCCTCCATAGGGGAAA
CAAAAGCAAGGCACTGCTACACGGGAAAAAGTAGAATTTTCGATCATTGC
ACACTTTAATTTTCACTACATGCCAATTTTCCTTCACGTGTTGTAATCAC
GTCTACTACGTGTCCATCATTTGAAACGGCTCTCGCCGCAGAAAGTGGAG
AAGACTCGCTCCTTCTGGCTCATGCCTTGTTCGCAACAGCCACCATTACT
CCCGCAGGCCTACACGCACCCATCAGGGTACCGTAATTGAGTTGGTGCAC
CATCACCGATGCCTGGAATTATGTGGGGGAGTTAATGTCCGGGGGAGAGG
GGAGAGTGCTGGGAGAGACGCAAACGCCCCTCATCATGGGCACACCGTCA
TCCTCAATCCATCATTCCGGGGAAGACCACCTCTTCCTCTGTCCGCCCTT
TTATGGTGGCAGGCCAGGCACACACGCAGGCATAGAGCGAGTATGCCTGC
CTTCTGCACAGCTACTTGACAATAGCGTGCATGGCTAAAGCACTGCCAAA
TCACTTTTCCATTCTCACAGACGGCCACCCCTCCCACCCTCTCTACACAA
CACTCACCCTTCACCCTTCCTTGCACCGACAGGTTCACATCCACCTTGGG
AGGGGCAGCAACAACACACAGCAGCATCAGTACCAGGCAGGAGCGAGATG
CAAAACATCAAGTGTGTGGTGGTTGGGGATGGGGCGGTCGGTAAGACATG
CTTGCTGATTTCCTACACTACCAACTCCTTTCCCGGCGAGTACATTCCGA
CGGTGTTCGATAATTACAGCGCCAACGTAATGGTGGATGGTAAGGACTTA
CTTATAACAAGCATGCCAACACACCGAGGGACAGGAGGAGGAGAGTGAAA
TAAAGGATTGCGTCGGGCGAAGTGGAGCGGAACCGGGGAGGACAAGAATG
GGGAGGGTATCGTCGGGTATATGTCTGGTCTGGATGAACGCGGCGGAAGC
AAGCTCACCACTTCCCTCCATCCCTCCCTCCCTCCCTCCCCCCCTCCTTG
ACAGGTAAGCCCATTAATTTGGGCCTATGGGACACGGCCGGGCAAGAAGA
CTACGACCGGCTCCGTCCTCTGTCCTACCCACAGACGGACGTGTTCCTCC
TGTGCTTCGCCGTGTCCTCCCCCTCGTCCTTCGAGAATATCAAGAACAAG
TGGTGGGTAACCTTACAGGCGGATGACTGGATGCAATGGAGGGAAGGACG
TAGGGAAAGAGGGGAAGGGTTTTCGATCGAGGAATATACTCCACCTTTTC
CCACCCTCATCCTCCCCGTCTCCCTCCCTCCCTCAGGTACCCCGAAATAA
AACACCACGCTCCCGGTGTGCCCTTCATCCTCGTTGGCACCAAGACGGAT
TTGCGGAAGGTGCGTTGTCTGCCTTTCCTCCTCCCCTCCCTCCCTTCCTC
CTTCCCTCCCTCCTTCCTTTCCTCCCTCTATCTCTCCCCCTCACCCTTGT
GCGCGCCAAGACAAACATTCCAATAGGTGTATTTTTCTCCAATCCCCCCT
TCCTCCCTCCCTCATTTGTCTTAATTTTTCCTCTTCTCCTTCTGGCTCAT
TACACATGCAGTGGAACTTACTAGGCTGATTTCCCCTTCCTCCCTTCCTC
CTCCCCTCCCTCCCTCCTTCTCCCCCTTAGGACGCCGACTTTGCCCGAAA
GCAAAAATTGGTGACAGCGGAGCAAGG

Coding sequence (CDS) from alignment at scaffold_22:28487..31963-

>mRNA_7868 ID=mRNA_7868|Name=jgi.p|Nanoce1779_2|545766|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_22:28487..31963- (Nannochloropsis oceanica)
ATGTGCTTGTTGTTTGGGAAAGGCACGACGAGTCCATTGTACAGGAAACA
GGGGGGAAAGAAGGTGGAGGGGATGGGGGTGGGGGTGGTGCCAGTAATGG
AGGAGGGGATGAGCAAGCGACGGTGGAGGGATGATGAAGAGGAGAGGCGA
AAATCGAGACGATCCATTACAAAGAAGAAGGAGGGGCAGGACAGCGGCGT
GGGTACCAGCACGACCGCCGCCGCCGGCCGTAGTATCGATGCCAAGCCCC
TCGCCTCTTTCCTCTTCTCCTTCGTATCTGGCGCCCTACCGACGTTTCTC
CAACTTCTCAAGGCTAACGGTGCCATGCTTATCCGTAACGGCACCCTCAT
GCTGGTCTGGGCCTATGCCACCGCCACGGCCACGCGCATGTCGACGTTGG
ACGTGGCGGCGCACCAGGTCGCTCTGTCGATCTGGCTTTTCTTCGCCTTG
GTCTCCGAAGCTCCCGGTATTGCCGCACAAGTCATGGCGGCACGCCTGTA
TTCCACTCGGAATCTCGCCGCGCTTCGCTCCCTCGCGCAACGCCTTGCGT
CCCTTGGCCTCTCCTTGGGTCTTGGGCTGGGGGGGATGTTGATCGTCCTC
CGTCGGTCCCTCCCTCCATTGTTTGCCTCCGACACCCAGGTACTCGCGAA
GGTGAGCGAACTGATGATGTTGCTGGGAGCACAACTGCCCTTGGTGGCTC
TCACTTTAATCGGAGAGTCCTTCCTTGTGGGCTGTGGGAAGTTTGGAGCG
TTGGCCTTGTGCAGCACTTTGACGAGTGGCGTGTGTGCCCTGGTTCTGCG
GTGGTTGGGGCGAGGGGGTGGGGGGGGCGGAGGAGGGGTGGTTTATATCT
GGTGGGCGATCAAGGGACTATTTGTGATGCGCTTGACGTGTGTGGCGTGG
TTGATGTATAATCCCTGGAAAGGGGCGCTGAGTGGGAAGGGGAGTTGGAG
GAGGGGAGGGAAGGGAGGGAAGGAGGAGGAGTTGCCTCCTCCTCCTCGAC
TGCTGCTGGTTGAGTAG

Synonyms

Publications