jgi.p|Nanoce1779_2|626145, mRNA_7867 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626145
Unique NamemRNA_7867
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2040
Alignment locationscaffold_22:28487..30875 -

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Properties
Property NameValue
TranscriptId626231
TrackFilteredModels2
ProteinId626145
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:28487..30875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626145gene_7867Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626145mRNA_7867-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7867CDS_7867Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7867 ID=mRNA_7867|Name=jgi.p|Nanoce1779_2|626145|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp
GAAGGAATCAAGGAGGGCAAGAGGGGAGGGAGAGAGAGTACAAGAGACAA
AATAATTTGTGACATGGGCCTTATGTAGGCCATTGATGCGCGCATGCCTG
GAAAAATGGTTGTAGACTAGTAATCGAAAAGCGCTGGCGAGAAGGAGGTT
GGGAGGGAGGAAGGTCAGAGAATAGAGGGAAATAACGAGAAGTAAGTGAA
AATGACAAGAAATACATACCAATCTGTTAAATCGCGGGCCCAATGTCCGC
GGTATATGGGTGGACGTATGGGTGTGTATTTTGTGCTCGCGTGTGCGCGC
GTGTGTGTCGCGTTTGCCCCAGGATTCCGTCGTCCCTTTACATCATATTG
AGATGGATGACTCGTGTAAAGAACCAAGTAGTGATAAAGAAAATAACTCA
AGATTCGCTTTAATCAATGAGGAACTCGCACAGGACGCAGGACTCTCGCC
TTGATGGCTTTCGCGTGCTCATTCGATTTCTTTGGAGCAACCTCCTCCCC
AATCCAAGATCATACATGCTAGACAAATAATAAACTCTGGTTTGCCAGAG
ATTTTCCTTGATATCCGACCAATCCGCATATGTACCATAGCCGGGCGATG
AAAAGAAATTTCGGGTGTTTGCTCTGATGCATCAAAAAGGCAGGCGGAGG
AAAGCAAAATGGACGATGGAGTTGGGGGGAAGGATGGTCGTCGCTTGCCT
CCATAGGGGAAACAAAAGCAAGGCACTGCTACACGGGAAAAAGTAGAATT
TTCGATCATTGCACACTTTAATTTTCACTACATGCCAATTTTCCTTCACG
TGTTGTAATCACGTCTACTACGTGTCCATCATTTGAAACGGCTCTCGCCG
CAGAAAGTGGAGAAGACTCGCTCCTTCTGGCTCATGCCTTGTTCGCAACA
GCCACCATTACTCCCGCAGGCCTACACGCACCCATCAGGGTACCGTAATT
GAGTTGGTGCACCATCACCGATGCCTGGAATTATGTGGGGGAGTTAATGT
CCGGGGGAGAGGGGAGAGTGCTGGGAGAGACGCAAACGCCCCTCATCATG
GGCACACCGTCATCCTCAATCCATCATTCCGGGGAAGACCACCTCTTCCT
CTGTCCGCCCTTTTATGGTGGCAGGCCAGGCACACACGCAGGCATAGAGC
GAGTATGCCTGCCTTCTGCACAGCTACTTGACAATAGCGTGCATGGCTAA
AGCACTGCCAAATCACTTTTCCATTCTCACAGACGGCCACCCCTCCCACC
CTCTCTACACAACACTCACCCTTCACCCTTCCTTGCACCGACAGGTTCAC
ATCCACCTTGGGAGGGGCAGCAACAACACACAGCAGCATCAGTACCAGGC
AGGAGCGAGATGCAAAACATCAAGTGTGTGGTGGTTGGGGATGGGGCGGT
CGGTAAGACATGCTTGCTGATTTCCTACACTACCAACTCCTTTCCCGGCG
AGTACATTCCGACGGTGTTCGATAATTACAGCGCCAACGTAATGGTGGAT
GGTAAGCCCATTAATTTGGGCCTATGGGACACGGCCGGGCAAGAAGACTA
CGACCGGCTCCGTCCTCTGTCCTACCCACAGACGGACGTGTTCCTCCTGT
GCTTCGCCGTGTCCTCCCCCTCGTCCTTCGAGAATATCAAGAACAAGTGG
TACCCCGAAATAAAACACCACGCTCCCGGTGTGCCCTTCATCCTCGTTGG
CACCAAGACGGATTTGCGGAAGGTGCGTTGTCTGCCTTTCCTCCTCCCCT
CCCTCCCTTCCTCCTTCCCTCCCTCCTTCCTTTCCTCCCTCTATCTCTCC
CCCTCACCCTTGTGCGCGCCAAGACAAACATTCCAATAGGTGTATTTTTC
TCCAATCCCCCCTTCCTCCCTCCCTCATTTGTCTTAATTTTTCCTCTTCT
CCTTCTGGCTCATTACACATGCAGTGGAACTTACTAGGCTGATTTCCCCT
TCCTCCCTTCCTCCTCCCCTCCCTCCCTCCTTCTCCCCCTTAGGACGCCG
ACTTTGCCCGAAAGCAAAAATTGGTGACAGCGGAGCAAGG
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protein sequence of jgi.p|Nanoce1779_2|626145

>mRNA_7867-protein ID=mRNA_7867-protein|Name=jgi.p|Nanoce1779_2|626145|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLLCFAVSSPSSFENIKNKWYPE
IKHHAPGVPFILVGTKTDLRKVRCLPFLLPSLPSSFPPSFLSSLYLSPSP
LCAPRQTFQ*
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mRNA from alignment at scaffold_22:28487..30875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7867 ID=mRNA_7867|Name=jgi.p|Nanoce1779_2|626145|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp|location=Sequence derived from alignment at scaffold_22:28487..30875- (Nannochloropsis oceanica)
GAAGGAATCAAGGAGGGCAAGAGGGGAGGGAGAGAGAGTACAAGAGACAA
AATAATTTGTGACATGGGCCTTATGTAGGCCATTGATGCGCGCATGCCTG
GAAAAATGGTTGTAGACTAGTAATCGAAAAGCGCTGGCGAGAAGGAGGTT
GGGAGGGAGGAAGGTCAGAGAATAGAGGGAAATAACGAGAAGTAAGTGAA
AATGACAAGAAATACATACCAATCTGTTAAATCGCGGGCCCAATGTCCGC
GGTATATGGGTGGACGTATGGGTGTGTATTTTGTGCTCGCGTGTGCGCGC
GTGTGTGTCGCGTTTGCCCCAGGATTCCGTCGTCCCTTTACATCATATTG
AGATGGATGACTCGTGTAAAGAACCAAGTAGTGATAAAGAAAATAACTCA
AGATTCGCTTTAATCAATGAGGAACTCGCACAGGACGCAGGACTCTCGCC
TTGATGGCTTTCGCGTGCTCATTCGATTTCTTTGGAGCAACCTCCTCCCC
AATCCAAGATCATACATGCTAGACAAATAATAAACTCTGGTTTGCCAGAG
ATTTTCCTTGATATCCGACCAATCCGCATATGTACCATAGCCGGGCGATG
AAAAGAAATTTCGGGTGTTTGCTCTGATGCATCAAAAAGGCAGGCGGAGG
AAAGCAAAATGGACGATGGAGTTGGGGGGAAGGATGGTCGTCGCTTGCCT
CCATAGGGGAAACAAAAGCAAGGCACTGCTACACGGGAAAAAGTAGAATT
TTCGATCATTGCACACTTTAATTTTCACTACATGCCAATTTTCCTTCACG
TGTTGTAATCACGTCTACTACGTGTCCATCATTTGAAACGGCTCTCGCCG
CAGAAAGTGGAGAAGACTCGCTCCTTCTGGCTCATGCCTTGTTCGCAACA
GCCACCATTACTCCCGCAGGCCTACACGCACCCATCAGGGTACCGTAATT
GAGTTGGTGCACCATCACCGATGCCTGGAATTATGTGGGGGAGTTAATGT
CCGGGGGAGAGGGGAGAGTGCTGGGAGAGACGCAAACGCCCCTCATCATG
GGCACACCGTCATCCTCAATCCATCATTCCGGGGAAGACCACCTCTTCCT
CTGTCCGCCCTTTTATGGTGGCAGGCCAGGCACACACGCAGGCATAGAGC
GAGTATGCCTGCCTTCTGCACAGCTACTTGACAATAGCGTGCATGGCTAA
AGCACTGCCAAATCACTTTTCCATTCTCACAGACGGCCACCCCTCCCACC
CTCTCTACACAACACTCACCCTTCACCCTTCCTTGCACCGACAGGTTCAC
ATCCACCTTGGGAGGGGCAGCAACAACACACAGCAGCATCAGTACCAGGC
AGGAGCGAGATGCAAAACATCAAGTGTGTGGTGGTTGGGGATGGGGCGGT
CGGTAAGACATGCTTGCTGATTTCCTACACTACCAACTCCTTTCCCGGCG
AGTACATTCCGACGGTGTTCGATAATTACAGCGCCAACGTAATGGTGGAT
GGTAAGGACTTACTTATAACAAGCATGCCAACACACCGAGGGACAGGAGG
AGGAGAGTGAAATAAAGGATTGCGTCGGGCGAAGTGGAGCGGAACCGGGG
AGGACAAGAATGGGGAGGGTATCGTCGGGTATATGTCTGGTCTGGATGAA
CGCGGCGGAAGCAAGCTCACCACTTCCCTCCATCCCTCCCTCCCTCCCTC
CCCCCCTCCTTGACAGGTAAGCCCATTAATTTGGGCCTATGGGACACGGC
CGGGCAAGAAGACTACGACCGGCTCCGTCCTCTGTCCTACCCACAGACGG
ACGTGTTCCTCCTGTGCTTCGCCGTGTCCTCCCCCTCGTCCTTCGAGAAT
ATCAAGAACAAGTGGTGGGTAACCTTACAGGCGGATGACTGGATGCAATG
GAGGGAAGGACGTAGGGAAAGAGGGGAAGGGTTTTCGATCGAGGAATATA
CTCCACCTTTTCCCACCCTCATCCTCCCCGTCTCCCTCCCTCCCTCAGGT
ACCCCGAAATAAAACACCACGCTCCCGGTGTGCCCTTCATCCTCGTTGGC
ACCAAGACGGATTTGCGGAAGGTGCGTTGTCTGCCTTTCCTCCTCCCCTC
CCTCCCTTCCTCCTTCCCTCCCTCCTTCCTTTCCTCCCTCTATCTCTCCC
CCTCACCCTTGTGCGCGCCAAGACAAACATTCCAATAGGTGTATTTTTCT
CCAATCCCCCCTTCCTCCCTCCCTCATTTGTCTTAATTTTTCCTCTTCTC
CTTCTGGCTCATTACACATGCAGTGGAACTTACTAGGCTGATTTCCCCTT
CCTCCCTTCCTCCTCCCCTCCCTCCCTCCTTCTCCCCCTTAGGACGCCGA
CTTTGCCCGAAAGCAAAAATTGGTGACAGCGGAGCAAGG
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Coding sequence (CDS) from alignment at scaffold_22:28487..30875-

>mRNA_7867 ID=mRNA_7867|Name=jgi.p|Nanoce1779_2|626145|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_22:28487..30875- (Nannochloropsis oceanica)
GTACCCCGAAATAAAACACCACGCTCCCGGTGTGCCCTTCATCCTCGTTG
GCACCAAGACGGATTTGCGGAAGGTGCGTTGTCTGCCTTTCCTCCTCCCC
TCCCTCCCTTCCTCCTTCCCTCCCTCCTTCCTTTCCTCCCTCTATCTCTC
CCCCTCACCCTTGTGCGCGCCAAGACAAACATTCCAATAGGTAAGCCCAT
TAATTTGGGCCTATGGGACACGGCCGGGCAAGAAGACTACGACCGGCTCC
GTCCTCTGTCCTACCCACAGACGGACGTGTTCCTCCTGTGCTTCGCCGTG
TCCTCCCCCTCGTCCTTCGAGAATATCAAGAACAAGTGATGCAAAACATC
AAGTGTGTGGTGGTTGGGGATGGGGCGGTCGGTAAGACATGCTTGCTGAT
TTCCTACACTACCAACTCCTTTCCCGGCGAGTACATTCCGACGGTGTTCG
ATAATTACAGCGCCAACGTAATGGTGGATGGTACCCCGAAATAAAACACC
ACGCTCCCGGTGTGCCCTTCATCCTCGTTGGCACCAAGACGGATTTGCGG
AAGGTGCGTTGTCTGCCTTTCCTCCTCCCCTCCCTCCCTTCCTCCTTCCC
TCCCTCCTTCCTTTCCTCCCTCTATCTCTCCCCCTCACCCTTGTGCGCGC
CAAGACAAACATTCCAATAGGTAAGCCCATTAATTTGGGCCTATGGGACA
CGGCCGGGCAAGAAGACTACGACCGGCTCCGTCCTCTGTCCTACCCACAG
ACGGACGTGTTCCTCCTGTGCTTCGCCGTGTCCTCCCCCTCGTCCTTCGA
GAATATCAAGAACAAGTGATGCAAAACATCAAGTGTGTGGTGGTTGGGGA
TGGGGCGGTCGGTAAGACATGCTTGCTGATTTCCTACACTACCAACTCCT
TTCCCGGCGAGTACATTCCGACGGTGTTCGATAATTACAGCGCCAACGTA
ATGGTGGATGGTACCCCGAAATAAAACACCACGCTCCCGGTGTGCCCTTC
ATCCTCGTTGGCACCAAGACGGATTTGCGGAAGGTGCGTTGTCTGCCTTT
CCTCCTCCCCTCCCTCCCTTCCTCCTTCCCTCCCTCCTTCCTTTCCTCCC
TCTATCTCTCCCCCTCACCCTTGTGCGCGCCAAGACAAACATTCCAATAG
GTAAGCCCATTAATTTGGGCCTATGGGACACGGCCGGGCAAGAAGACTAC
GACCGGCTCCGTCCTCTGTCCTACCCACAGACGGACGTGTTCCTCCTGTG
CTTCGCCGTGTCCTCCCCCTCGTCCTTCGAGAATATCAAGAACAAGTGAT
GCAAAACATCAAGTGTGTGGTGGTTGGGGATGGGGCGGTCGGTAAGACAT
GCTTGCTGATTTCCTACACTACCAACTCCTTTCCCGGCGAGTACATTCCG
ACGGTGTTCGATAATTACAGCGCCAACGTAATGGTGGATG
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Synonyms
Publications