jgi.p|Nanoce1779_2|559072, mRNA_7865 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559072
Unique Name	mRNA_7865
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	943
Alignment location	scaffold_22:20177..21896 +

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Properties


Property Name	Value
TranscriptId	559158
Track	FilteredModels2
ProteinId	559072

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:20177..21896 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559072	gene_7865	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559072	mRNA_7865-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7865	CDS_7865	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:20177..21896+
coding sequence from alignment at scaffold_22:20177..21896+

mRNA sequence

>mRNA_7865 ID=mRNA_7865|Name=jgi.p|Nanoce1779_2|559072|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
ATGCGCTTGGAAGAAATCCACCGCATAAAGTATGTCATTGGTGTTGATGA
GGCAGGACGAGGGCCATTGGCCGGTCCTGTGGTAGCTGCAGCGTGCTACA
TCCCCTCAGACGTGTATATTCCTGGCTTGCAAGACAGTAAAAGAATGGAC
GAGGCAGCGAGGGAGGAAGCATTTGAGGCCTTGATGGAGGGAGGGAAGAA
GGGAGGGCTCGGGGTGCGCTGGGCGGTGGAGGTAGTGGGGGAGGCGAGAA
TCGACGAGGTAAACATATTGCAGGCGACGTTACAGGCAATGGGGGCGGCG
TTGAGGAAGGTGGTGGAGGGGAAGACGGAGGGAGGAATGTTCGAGAATTG
TTACGCGTTAATCGATGGCAATCAGGTTCCGAAAGGCTTGCCGGTCGCTT
TAGAAGGAGAGAGGGAGGGAGGGGGCGCAAGGGTGGAATGTGTGGTGAAG
GGTGACAGTAAAGTGAGGTGTATTGCGGCCGCCAGTATCCTGGCCAAGGT
GACCCGGGATAGGATTATGATGGCCTACCACGACCAGTATCCCCTATACA
ATTTCGCTCAGCACAAAGGCTATCCTACTCCAGGACACAAGGCCGCTATC
CTCAAGCACGGCCCATGCCCCATCCACAGGATGACATTCGCACCCTTGAA
GCACATGAAGTGAGGGACGGGACCGAGGGAGGAAATTATTGAATGATGGT
TGTGACTGATATATATATATATATGATTGACATGTATATGCGTGTGTGTA
TACATGTATGTGTATCATGAATGACTGAACTCTAACAGATAATTTCAAGT
AAGTTGATGGGAAGAGGAAAAAAATAAAGGATGCAACTAGGATTCGCAGT
ATTGACGTTGCTCAGCCCAGCCTGGGCAGCCGCTCTCCCTCTCCATCTCT
ACTTCTCCTATTTCTTCTTTTTTTTTGTTTTTTTTTTCTTTTT

protein sequence of jgi.p|Nanoce1779_2|559072

>mRNA_7865-protein ID=mRNA_7865-protein|Name=jgi.p|Nanoce1779_2|559072|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRLEEIHRIKYVIGVDEAGRGPLAGPVVAAACYIPSDVYIPGLQDSKRMD
EAAREEAFEALMEGGKKGGLGVRWAVEVVGEARIDEVNILQATLQAMGAA
LRKVVEGKTEGGMFENCYALIDGNQVPKGLPVALEGEREGGGARVECVVK
GDSKVRCIAAASILAKVTRDRIMMAYHDQYPLYNFAQHKGYPTPGHKAAI
LKHGPCPIHRMTFAPLKHMK*

mRNA from alignment at scaffold_22:20177..21896+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7865 ID=mRNA_7865|Name=jgi.p|Nanoce1779_2|559072|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_22:20177..21896+ (Nannochloropsis oceanica)
ATGCGCTTGGAAGAAATCCACCGCATAAAGTATGTCATTGGTGTTGATGA
GGCAGGACGAGGGCCATTGGCCGGTCCTGTGGTAGCTGCAGCGTGCTACA
TCCCCTCAGACGTGTATATTCCTGGCTTGCAAGACAGTAAAAGAATGGAC
GAGGCAGCGAGGGAGGAAGCATTTGAGGCCTTGATGGAGGGAGGGAAGAA
GGGAGGGCTCGGGGTGCGCTGGGCGGTGGAGGTAGTGGGGGAGGCGAGAA
TCGACGAGGTAAACATATTGCAGGCGACGTTACAGGCAATGGGGGCGGCG
TTGAGGAAGGTGGTGGAGGGGAAGACGGAGGGAGGTGGGAAAGCGGGGAG
GAGGGAAAGAGGGAGGGAGGGAGGAATGTTCGAGAATTGTTACGCGTTAA
TCGATGGCAATCAGGTTCCGAAAGGCTTGCCGGTCGCTTTAGAAGGAGAG
AGGGAGGGAGGGGGCGCAAGGGTGGAATGTGTGGTGAAGGGTGACAGTAA
AGTGAGGTGTATTGCGGCCGCCAGTATCCTGGCCAAGGTGACCCGGGATA
GGATTATGGTAAGAAAGAAGGGAGGCAGGGAGGGAATGGAAACGTAATTG
AAATATCAGCAGGAAGGAGAGTGGGAGGGAGGGGGGGAGGGAAGGCAAAG
CACACCAAACGTGCCCTCCAGACATGCTCTTTTGTGACTGGGGAGAAGAT
TTGGATGCCGCATTGATGAGGATCAAATGTCGAGTATTAGTCTTACTCTC
TCTCTCTCTCTGAGTCTCTGTGTATTTACATCTCTCTCTCTCTGTGTCTT
TCTCTCTCTTCCTCTCTTCCCCTGTGTGTGTATGTGTACATTCAATTTAT
TTCTAACGCACGCTAAGCCGGCCGTCGAGACGAACGTTCTCCCTTTACGG
GGAGAGGGCTCGAGTGATCTGGCGGTGACTATGTCCAATTAACAGCTGAG
TCAAGTGCTAGAATGAAATACCACCTGTCCCTCTTGGCCCGATCTGAGGT
GGATTCCCTCACCCTTAGTCATGGAGGGGCAACCCCGGTGAAAATTGTGT
GCCCTCCCTCCTTCCCCCGCTCCCTCCCTCCCTCCCTTCCTCCTTCTCGA
CGAGCATCCCTTTTGGTCTGTCTGACTTGCGACCGGTCTCTTGTCGATTT
ATGAAGGTCTCATTTCATCACATCACCTAAGGATACATGTTTCGTGACAG
CCTTTTCCTCAGTGATGAATATTTTATGACGAGATCACCAGTCCGCAATC
ACCATCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCTTTGCAGATGG
CCTACCACGACCAGTATCCCCTATACAATTTCGCTCAGCACAAAGGCTAT
CCTACTCCAGGACACAAGGCCGCTATCCTCAAGCACGGCCCATGCCCCAT
CCACAGGATGACATTCGCACCCTTGAAGCACATGAAGTGAGGGACGGGAC
CGAGGGAGGAAATTATTGAATGATGGTTGTGACTGATATATATATATATA
TGATTGACATGTATATGCGTGTGTGTATACATGTATGTGTATCATGAATG
ACTGAACTCTAACAGATAATTTCAAGTAAGTTGATGGGAAGAGGAAAAAA
ATAAAGGATGCAACTAGGATTCGCAGTATTGACGTTGCTCAGCCCAGCCT
GGGCAGCCGCTCTCCCTCTCCATCTCTACTTCTCCTATTTCTTCTTTTTT
TTTGTTTTTTTTTTCTTTTT

Coding sequence (CDS) from alignment at scaffold_22:20177..21896+

>mRNA_7865 ID=mRNA_7865|Name=jgi.p|Nanoce1779_2|559072|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_22:20177..21896+ (Nannochloropsis oceanica)
ATGCGCTTGGAAGAAATCCACCGCATAAAGTATGTCATTGGTGTTGATGA
GGCAGGACGAGGGCCATTGGCCGGTCCTGTGGTAGCTGCAGCGTGCTACA
TCCCCTCAGACGTGTATATTCCTGGCTTGCAAGACAGTAAAAGAATGGAC
GAGGCAGCGAGGGAGGAAGCATTTGAGGCCTTGATGGAGGGAGGGAAGAA
GGGAGGGCTCGGGGTGCGCTGGGCGGTGGAGGTAGTGGGGGAGGCGAGAA
TCGACGAGGTAAACATATTGCAGGCGACGTTACAGGCAATGGGGGCGGCG
TTGAGGAAGGTGGTGGAGGGGAAGACGGAGGGAGGAATGTTCGAGAATTG
TTACGCGTTAATCGATGGCAATCAGGTTCCGAAAGGCTTGCCGGTCGCTT
TAGAAGGAGAGAGGGAGGGAGGGGGCGCAAGGGTGGAATGTGTGGTGAAG
GGTGACAGTAAAGTGAGGTGTATTGCGGCCGCCAGTATCCTGGCCAAGGT
GACCCGGGATAGGATTATGATGGCCTACCACGACCAGTATCCCCTATACA
ATTTCGCTCAGCACAAAGGCTATCCTACTCCAGGACACAAGGCCGCTATC
CTCAAGCACGGCCCATGCCCCATCCACAGGATGACATTCGCACCCTTGAA
GCACATGAAGTGAATGCGCTTGGAAGAAATCCACCGCATAAAGTATGTCA
TTGGTGTTGATGAGGCAGGACGAGGGCCATTGGCCGGTCCTGTGGTAGCT
GCAGCGTGCTACATCCCCTCAGACGTGTATATTCCTGGCTTGCAAGACAG
TAAAAGAATGGACGAGGCAGCGAGGGAGGAAGCATTTGAGGCCTTGATGG
AGGGAGGGAAGAAGGGAGGGCTCGGGGTGCGCTGGGCGGTGGAGGTAGTG
GGGGAGGCGAGAATCGACGAGGTAAACATATTGCAGGCGACGTTACAGGC
AATGGGGGCGGCGTTGAGGAAGGTGGTGGAGGGGAAGACGGAGGGAGGAA
TGTTCGAGAATTGTTACGCGTTAATCGATGGCAATCAGGTTCCGAAAGGC
TTGCCGGTCGCTTTAGAAGGAGAGAGGGAGGGAGGGGGCGCAAGGGTGGA
ATGTGTGGTGAAGGGTGACAGTAAAGTGAGGTGTATTGCGGCCGCCAGTA
TCCTGGCCAAGGTGACCCGGGATAGGATTATGATGGCCTACCACGACCAG
TATCCCCTATACAATTTCGCTCAGCACAAAGGCTATCCTACTCCAGGACA
CAAGGCCGCTATCCTCAAGCACGGCCCATGCCCCATCCACAGGATGACAT
TCGCACCCTTGAAGCACATGAAGTGAATGCGCTTGGAAGAAATCCACCGC
ATAAAGTATGTCATTGGTGTTGATGAGGCAGGACGAGGGCCATTGGCCGG
TCCTGTGGTAGCTGCAGCGTGCTACATCCCCTCAGACGTGTATATTCCTG
GCTTGCAAGACAGTAAAAGAATGGACGAGGCAGCGAGGGAGGAAGCATTT
GAGGCCTTGATGGAGGGAGGGAAGAAGGGAGGGCTCGGGGTGCGCTGGGC
GGTGGAGGTAGTGGGGGAGGCGAGAATCGACGAGGTAAACATATTGCAGG
CGACGTTACAGGCAATGGGGGCGGCGTTGAGGAAGGTGGTGGAGGGGAAG
ACGGAGGGAGGAATGTTCGAGAATTGTTACGCGTTAATCGATGGCAATCA
GGTTCCGAAAGGCTTGCCGGTCGCTTTAGAAGGAGAGAGGGAGGGAGGGG
GCGCAAGGGTGGAATGTGTGGTGAAGGGTGACAGTAAAGTGAGGTGTATT
GCGGCCGCCAGTATCCTGGCCAAGGTGACCCGGGATAGGATTATGATGGC
CTACCACGACCAGTATCCCCTATACAATTTCGCTCAGCACAAAGGCTATC
CTACTCCAGGACACAAGGCCGCTATCCTCAAGCACGGCCCATGCCCCATC
CACAGGATGACATTCGCACCCTTGAAGCACATGAAGTGA

Synonyms

Publications