jgi.p|Nanoce1779_2|600300, mRNA_7864 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600300
Unique NamemRNA_7864
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length833
Alignment locationscaffold_22:19144..19976 -

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Properties
Property NameValue
TranscriptId600386
TrackFilteredModels2
ProteinId600300
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:19144..19976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600300gene_7864Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600300mRNA_7864-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7864CDS_7864Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7864 ID=mRNA_7864|Name=jgi.p|Nanoce1779_2|600300|organism=Nannochloropsis oceanica|type=mRNA|length=833bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAGGGCGACACCTCGACTACCGCCGCAGCAGCAGCAGCAGTGACTTT
TGACGCCTTCTTGCCCTTCCTAGTTACCATTACGGCTGTCTCTACCATCG
CGGCCGCCGCCATAGCATCCGCGGCTGTTGCTTCTGCTACAGCTACCACT
GTTTTTTTGCTCCGTTTCGTGGCGCCCATGACTGCTGCTGCTGCTGCTGC
TGCTGCTGATGATGATGATGATGATGCTGGCTCTCCTTCCATCGCCGCAT
CCTTCGGCTTACATGGCCTTCCTCGGCCTCGTTTTTTCACCTCCAACGCC
ACCTTGCCAGCTACTGGCAGAGAGGGTGCGCTGTGAAGAGAAAGGGACGT
CGCGTCCTTTTCCTCGTCCAATCCATCTCCTCCCGTCGCCAGCCTGGTTA
GTTTTCGTTGCTGTTGCTGAGACATTGCAGCGATTAGTGTGAACGAGGGA
GGCGTGGGCTTGTTGCTGCTGCTCCGGGTGAGGGTTGCTCGAGGCATGGA
AGGGGTGGTGGGAAGAAGGAAGCAGGGCGGTGGCAAAGACGAAGCGGCAA
CAGCACTACAGGCGGCACGCGCAACAATCAGAGGCAGTAGCCAGTAGTAC
CTTGAGGTAAAGAGGCAATACGTGGTTGTGGCGGTGGAAAGGATGGCGGA
TCGTGGAGAGAACACAATGAACATGCAAGGACCGCGTCAAAGCTGCAGCA
AGATTTAGGGGGTGGGAGGAGGTCGAACCAACCATACAATGAGGTTGTTG
GGCACTCTTCCGCTCAGGTCCCTCCCTCTGTTG
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protein sequence of jgi.p|Nanoce1779_2|600300

>mRNA_7864-protein ID=mRNA_7864-protein|Name=jgi.p|Nanoce1779_2|600300|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MMMMMMLALLPSPHPSAYMAFLGLVFSPPTPPCQLLAERVRCEEKGTSRP
FPRPIHLLPSPAWLVFVAVAETLQRL
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mRNA from alignment at scaffold_22:19144..19976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7864 ID=mRNA_7864|Name=jgi.p|Nanoce1779_2|600300|organism=Nannochloropsis oceanica|type=mRNA|length=833bp|location=Sequence derived from alignment at scaffold_22:19144..19976- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAGGGCGACACCTCGACTACCGCCGCAGCAGCAGCAGCAGTGACTTT
TGACGCCTTCTTGCCCTTCCTAGTTACCATTACGGCTGTCTCTACCATCG
CGGCCGCCGCCATAGCATCCGCGGCTGTTGCTTCTGCTACAGCTACCACT
GTTTTTTTGCTCCGTTTCGTGGCGCCCATGACTGCTGCTGCTGCTGCTGC
TGCTGCTGATGATGATGATGATGATGCTGGCTCTCCTTCCATCGCCGCAT
CCTTCGGCTTACATGGCCTTCCTCGGCCTCGTTTTTTCACCTCCAACGCC
ACCTTGCCAGCTACTGGCAGAGAGGGTGCGCTGTGAAGAGAAAGGGACGT
CGCGTCCTTTTCCTCGTCCAATCCATCTCCTCCCGTCGCCAGCCTGGTTA
GTTTTCGTTGCTGTTGCTGAGACATTGCAGCGATTAGTGTGAACGAGGGA
GGCGTGGGCTTGTTGCTGCTGCTCCGGGTGAGGGTTGCTCGAGGCATGGA
AGGGGTGGTGGGAAGAAGGAAGCAGGGCGGTGGCAAAGACGAAGCGGCAA
CAGCACTACAGGCGGCACGCGCAACAATCAGAGGCAGTAGCCAGTAGTAC
CTTGAGGTAAAGAGGCAATACGTGGTTGTGGCGGTGGAAAGGATGGCGGA
TCGTGGAGAGAACACAATGAACATGCAAGGACCGCGTCAAAGCTGCAGCA
AGATTTAGGGGGTGGGAGGAGGTCGAACCAACCATACAATGAGGTTGTTG
GGCACTCTTCCGCTCAGGTCCCTCCCTCTGTTG
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Coding sequence (CDS) from alignment at scaffold_22:19144..19976-

>mRNA_7864 ID=mRNA_7864|Name=jgi.p|Nanoce1779_2|600300|organism=Nannochloropsis oceanica|type=CDS|length=229bp|location=Sequence derived from alignment at scaffold_22:19144..19976- (Nannochloropsis oceanica)
ATGATGATGATGATGATGCTGGCTCTCCTTCCATCGCCGCATCCTTCGGC
TTACATGGCCTTCCTCGGCCTCGTTTTTTCACCTCCAACGCCACCTTGCC
AGCTACTGGCAGAGAGGGTGCGCTGTGAAGAGAAAGGGACGTCGCGTCCT
TTTCCTCGTCCAATCCATCTCCTCCCGTCGCCAGCCTGGTTAGTTTTCGT
TGCTGTTGCTGAGACATTGCAGCGATTAG
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Synonyms
Publications