jgi.p|Nanoce1779_2|600299, mRNA_7863 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600299
Unique NamemRNA_7863
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1566
Alignment locationscaffold_22:17523..19088 +

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Properties
Property NameValue
TranscriptId600385
TrackFilteredModels2
ProteinId600299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:17523..19088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600299gene_7863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600299mRNA_7863-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7863CDS_7863Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7863 ID=mRNA_7863|Name=jgi.p|Nanoce1779_2|600299|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
CGCCAATCGCTAACTTTTTCTGCCACCAACTGCATGCGTCACGCCTAGAG
ACTCCTTTAGTTTGCATTGCTTGTCGTGCGTCACCTCTACTTTGTTTCAC
CCTCGGCATACTATGACTGACCAGGATGTCAGCGAGGAATTCGAAAGCCA
ATATTTGCCTTGTCGCATCACTCATGGAGACCGTTCCAAAGGCTTTGGGC
GTGTCTAGGGACGACCCTGCTGCCATGGCAGCAAGGCTTTGAGCCTCTCC
AAGCACGGCAGCGCTTAAAAGTCAGTCTTTGTTGACAAAGAGCAGCCCTT
ATAATATGAGGCCGATGCATGGAAATTGTTCGGCGACGAGTTCCTGGCGG
ACATCACCTTCATTCTCAAGCACAACGAAGATGTTGAATACGACGGAGGG
CACACCCAGCAGGAAGCACACTACTGCAGGTGATGGCCGCAGCAGCATTC
GAAGCAGCTACCGCAGCAGCAGCAGCGACAGCGACTGAAGCAGCGGCTGT
GGGAATGGCGGTGGAGGGAAAGGCAGCAGGAACACCTTGAGCACCAGTCA
TAGCCAGAGGGGATAGGGGGCCTTCAGTCATGACGATAAAAACGCTCCAG
GCACATTAGCAATGCGACACAAAATTTATTTTTAGCGTGACCTCCAAAGG
AGGCTTCCATGAAGAGGGAGGACATCGTCTTCGTGTATGATGGACAGGTT
GCCTAGGTGGAAGATGCGGATCCTCCTAGTCTGCCTGGTTTACCAAGCGA
TTTACACTCATTGCAAAAGTGGCCGAGCAAGAAAGCCAAGAGACGTGTTC
GCCAGAAATTTCAAAATCGTGCAGGACTTTGTTACACTTGAAGTGCCTCC
AGGTGCAGTCATGATACCACAACTTTCATCTGGACGAGAACGTGAAGGGT
TTTCCACTCGGTTCCCGTGAAGCTGTGTTGTGGAGCTGAGACCTCCGCAT
GCATTCTAAGCACTCCAGCGTCTAAGGGTCGATTGCTCTGTACCACCACT
TTTATTCACATTCTTCTCCATACATGTAGGTGTCTTCTCGTATCCTATCT
CCGACAATTTTCCCCAGAGCAATCAATCTCATAGGCCCATTCAAAGCACC
ATCAACAATTATGCCTTCGGTTTTTTTAGCTCCACCCATATGGTACGATT
GTAAGGCACGTCGCGGAAGATGAAAAGGGATCTCTTGCGTTTGCTTTACT
TATTTGTGATGCTCGCGTAGTAGTCGTGTGCTGTTTATGTCACTATGTGT
GACACAAAGCGGGTCGGAGGTGGGCATCGAAATGTAGGAGCAACATTGTT
ACTACTTGCTCCGAATGTTTCATAGCAGCAGTCAGCAAGCCGTCAAGAGT
CGTTGAATAGAACTGTGTATGGCTATCTATACTGGGACCCAAAGGACCAA
AAGGTTAAATTACGGAAAGTACGGGGCGTATCGAAGTGGAGGCTGCAACG
AATGAGCGAGGGAACGTGCGGATGCCATCATTATGATCGCACTGCGGTTG
TCGTAAAAAAGCAGCGAGGAGCGACGACAACCAAAGAAAACAATACCAAG
AAAGCAGTATCCATGT
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protein sequence of jgi.p|Nanoce1779_2|600299

>mRNA_7863-protein ID=mRNA_7863-protein|Name=jgi.p|Nanoce1779_2|600299|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MMDRLPRWKMRILLVCLVYQAIYTHCKSGRARKPRDVFARNFKIVQDFVT
LEVPPGAVMIPQLSSGREREGFSTRFP*
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mRNA from alignment at scaffold_22:17523..19088+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7863 ID=mRNA_7863|Name=jgi.p|Nanoce1779_2|600299|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_22:17523..19088+ (Nannochloropsis oceanica)
CGCCAATCGCTAACTTTTTCTGCCACCAACTGCATGCGTCACGCCTAGAG
ACTCCTTTAGTTTGCATTGCTTGTCGTGCGTCACCTCTACTTTGTTTCAC
CCTCGGCATACTATGACTGACCAGGATGTCAGCGAGGAATTCGAAAGCCA
ATATTTGCCTTGTCGCATCACTCATGGAGACCGTTCCAAAGGCTTTGGGC
GTGTCTAGGGACGACCCTGCTGCCATGGCAGCAAGGCTTTGAGCCTCTCC
AAGCACGGCAGCGCTTAAAAGTCAGTCTTTGTTGACAAAGAGCAGCCCTT
ATAATATGAGGCCGATGCATGGAAATTGTTCGGCGACGAGTTCCTGGCGG
ACATCACCTTCATTCTCAAGCACAACGAAGATGTTGAATACGACGGAGGG
CACACCCAGCAGGAAGCACACTACTGCAGGTGATGGCCGCAGCAGCATTC
GAAGCAGCTACCGCAGCAGCAGCAGCGACAGCGACTGAAGCAGCGGCTGT
GGGAATGGCGGTGGAGGGAAAGGCAGCAGGAACACCTTGAGCACCAGTCA
TAGCCAGAGGGGATAGGGGGCCTTCAGTCATGACGATAAAAACGCTCCAG
GCACATTAGCAATGCGACACAAAATTTATTTTTAGCGTGACCTCCAAAGG
AGGCTTCCATGAAGAGGGAGGACATCGTCTTCGTGTATGATGGACAGGTT
GCCTAGGTGGAAGATGCGGATCCTCCTAGTCTGCCTGGTTTACCAAGCGA
TTTACACTCATTGCAAAAGTGGCCGAGCAAGAAAGCCAAGAGACGTGTTC
GCCAGAAATTTCAAAATCGTGCAGGACTTTGTTACACTTGAAGTGCCTCC
AGGTGCAGTCATGATACCACAACTTTCATCTGGACGAGAACGTGAAGGGT
TTTCCACTCGGTTCCCGTGAAGCTGTGTTGTGGAGCTGAGACCTCCGCAT
GCATTCTAAGCACTCCAGCGTCTAAGGGTCGATTGCTCTGTACCACCACT
TTTATTCACATTCTTCTCCATACATGTAGGTGTCTTCTCGTATCCTATCT
CCGACAATTTTCCCCAGAGCAATCAATCTCATAGGCCCATTCAAAGCACC
ATCAACAATTATGCCTTCGGTTTTTTTAGCTCCACCCATATGGTACGATT
GTAAGGCACGTCGCGGAAGATGAAAAGGGATCTCTTGCGTTTGCTTTACT
TATTTGTGATGCTCGCGTAGTAGTCGTGTGCTGTTTATGTCACTATGTGT
GACACAAAGCGGGTCGGAGGTGGGCATCGAAATGTAGGAGCAACATTGTT
ACTACTTGCTCCGAATGTTTCATAGCAGCAGTCAGCAAGCCGTCAAGAGT
CGTTGAATAGAACTGTGTATGGCTATCTATACTGGGACCCAAAGGACCAA
AAGGTTAAATTACGGAAAGTACGGGGCGTATCGAAGTGGAGGCTGCAACG
AATGAGCGAGGGAACGTGCGGATGCCATCATTATGATCGCACTGCGGTTG
TCGTAAAAAAGCAGCGAGGAGCGACGACAACCAAAGAAAACAATACCAAG
AAAGCAGTATCCATGT
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Coding sequence (CDS) from alignment at scaffold_22:17523..19088+

>mRNA_7863 ID=mRNA_7863|Name=jgi.p|Nanoce1779_2|600299|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_22:17523..19088+ (Nannochloropsis oceanica)
ATGATGGACAGGTTGCCTAGGTGGAAGATGCGGATCCTCCTAGTCTGCCT
GGTTTACCAAGCGATTTACACTCATTGCAAAAGTGGCCGAGCAAGAAAGC
CAAGAGACGTGTTCGCCAGAAATTTCAAAATCGTGCAGGACTTTGTTACA
CTTGAAGTGCCTCCAGGTGCAGTCATGATACCACAACTTTCATCTGGACG
AGAACGTGAAGGGTTTTCCACTCGGTTCCCGTGA
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Synonyms
Publications