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Properties
| Property Name | Value |
|---|
| TranscriptId | 574216 |
| Track | FilteredModels2 |
| ProteinId | 574130 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:430054..432024 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_786 ID=mRNA_786|Name=jgi.p|Nanoce1779_2|574130|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp
ACAGCAGCAGCACTAACCATGCTGATGGCAGCTGGTAGCGCAGTCAGGAG
ACGTCTGCTACCTGTCGTTGCGGGGCTACCGCGCGTCCGCCTCCCCATAA
TGTCCCAGCAGAGTTGCCGTGCATTTGCCAACGACAGCGCCTCGAAAAAG
GACGACGAGGCCACCACTAAAGTCCCCATACATCCCGCCAACGCCAACCC
CTTTCCCACCGCTGGTGCGCATGCGGGCAAACCTGATTTTGATCTTATTG
TAATAGGCTCTGGTCCAGCCGCCCAAGCCTGCGCCATCTCTTCCAGCCGA
CGTGGCAAGAGGGTTGCTGTCATTGACAAGCCCGGTGTGCTTGGTGGGGT
GTGCGTCAACACGGGCACGATACCTAGCAAAACGTTTCGAGAGGCCGTCC
TTCATCTGACGGGCTATCGGCACCAAGGCTTTTACGGCAAGGTCTACGCG
CCATCGGATCGCATCAGTATGGAGGGGATACTGCATCGTGTCTCAATGGT
GGTAAAGGGCGAGAAGGATGTGATGCGGAATCGTTTTCGGCAATACGGCA
TTACCCACATCTATGGCACGGCACAATTTACGGGGGAAGAGAAGTCGGTG
CAAGTCACCTCGGCGGCCTTGGAGATTGAAGACCGAAAGAAAGAGCACGC
CATAGGTACACCAGGGGCGGGGCTTGAGGTGGAACCGTATAGCAAGCCGT
TCACGGCGGAGAAGATGTTGGTGGCTGTGGGGACAACGCCAGCCCGCAGG
CCCGATTTTGAATTTGACGGGGTGCACATCATTGATAGTGATGATTTGCT
CAGTGGGTCGATTCAGAAGGTACCGCGGGAGCTGATTGTGGTGGGGGCGG
GCGTGATTGGGATGGAGTATGCGAGTATGTTTAATGTTATCCCCGGGTCG
AGGGTAACGGTGATTGATGGACGTCCGGATATCTTGACGTTCGCGGATAA
AGAGATCATCCAGAGCTTGGAATATGAAATGCGTCAGAAGGGGGCTCGGT
TTTTGTTGGGGGAGGAGGTGTTGAGTGCTCGGATTGAGGGTGATCATGTG
GTAGCGGATATGGCGAGCGGCAAAGTGCTGAGGGGGGATTGCCTGTTGTA
CACCGTGGGGAGGCAAGGGAACACGGCGGGATTGTGCTTGGAAAAGACGG
GTTTGGAGGTGAATAAACGAGGGCTTTTGACGATCAATGATAACTATCAA
ACATCTGTCCCGTGGTTATATGCCGCTGGCGATTGTATTGGATTTCCTGC
CCTGGCCTCGACCTCCTCGCAGCAGGGGCGGATGGCGGCGCATCACATGT
GGGGGGAGGAGGGGGAGGAGGCAAATAAGGCCTTTGGGGGTTTCCCGTAT
GGAATCTACACAATCCCGGAGATTTCGATGGTGGGCTACACGGAGCAGCA
GTTAACACAGCAAAAGATTCCCTATGAGATGGGCGTGGCGAGATATGATG
AGTTGGCGAAGGGGCAGATGATGGGGGGGAGTAATGGGATGTTGAAGATT
TTGTTCCATGCGGAGACATTGAAAATTTTGGGCGTGCATTGTATGGGTGA
GAGTGCGACGGAAATTGTGCATGTGGGCCAAGTAGCGATGGATATGAATC
TGGATATGCATTTTTTGACGGAAAATGTTTTCAATTACCCGACATTTGCC
GAGTCATATCGGGTGGCGGCGTTTAATGGATTGAAGAGGTTGGCCTTGGC
GGGGTATACTGACTTGTCGGACCATGGGGCGGCGTCGTCGCCTTAAAGTT
TTATAGCGAAGAGAGGGATGGAGCAAAACGATTTTGTGGGTGTACCAGGT
TGTAAAGAAAAAAGAGAGGGAGTGTTTTCTAGACGCGAAATAAAGAAATC
AGGTATCGTATGAGCGGA back to topprotein sequence of jgi.p|Nanoce1779_2|574130 >mRNA_786-protein ID=mRNA_786-protein|Name=jgi.p|Nanoce1779_2|574130|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MLMAAGSAVRRRLLPVVAGLPRVRLPIMSQQSCRAFANDSASKKDDEATT
KVPIHPANANPFPTAGAHAGKPDFDLIVIGSGPAAQACAISSSRRGKRVA
VIDKPGVLGGVCVNTGTIPSKTFREAVLHLTGYRHQGFYGKVYAPSDRIS
MEGILHRVSMVVKGEKDVMRNRFRQYGITHIYGTAQFTGEEKSVQVTSAA
LEIEDRKKEHAIGTPGAGLEVEPYSKPFTAEKMLVAVGTTPARRPDFEFD
GVHIIDSDDLLSGSIQKVPRELIVVGAGVIGMEYASMFNVIPGSRVTVID
GRPDILTFADKEIIQSLEYEMRQKGARFLLGEEVLSARIEGDHVVADMAS
GKVLRGDCLLYTVGRQGNTAGLCLEKTGLEVNKRGLLTINDNYQTSVPWL
YAAGDCIGFPALASTSSQQGRMAAHHMWGEEGEEANKAFGGFPYGIYTIP
EISMVGYTEQQLTQQKIPYEMGVARYDELAKGQMMGGSNGMLKILFHAET
LKILGVHCMGESATEIVHVGQVAMDMNLDMHFLTENVFNYPTFAESYRVA
AFNGLKRLALAGYTDLSDHGAASSP* back to topmRNA from alignment at scaffold_2:430054..432024- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_786 ID=mRNA_786|Name=jgi.p|Nanoce1779_2|574130|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp|location=Sequence derived from alignment at scaffold_2:430054..432024- (Nannochloropsis oceanica)
ACAGCAGCAGCACTAACCATGCTGATGGCAGCTGGTAGCGCAGTCAGGAG
ACGTCTGCTACCTGTCGTTGCGGGGCTACCGCGCGTCCGCCTCCCCATAA
TGTCCCAGCAGAGTTGCCGTGCATTTGCCAACGACAGCGCCTCGAAAAAG
GACGACGAGGCCACCACTAAAGTCCCCATACATCCCGCCAACGCCAACCC
CTTTCCCACCGCTGGTGCGCATGCGGGCAAACCTGATTTTGATCTTATTG
TAATAGGCTCTGGTCCAGGTTAGTTAACTCATTTGAGTAGAGTAGGGTTT
GATTTTGATTCGATTAACATTCAACCGTCTCACTCCCTTCTCTCTCCCTC
CCTCCTTCCTCACAATTACAGCCGCCCAAGCCTGCGCCATCTCTTCCAGC
CGACGTGGCAAGAGGGTTGCTGTCATTGACAAGCCCGGTGTGCTTGGTGG
GGTGTGCGTCAACACGGGCACGATACCTAGCAAAACGTTTCGAGAGGCCG
TCCTTCATCTGACGGGCTATCGGCACCAAGGCTTTTACGGCAAGGTCTAC
GCGCCATCGGATCGCATCAGTATGGAGGGGATACTGCATCGTGTCTCAAT
GGTGGTAAAGGGCGAGAAGGATGTGATGCGGAATCGTTTTCGGCAATACG
GCATTACCCACATCTATGGCACGGCACAATTTACGGGGGAAGAGAAGTCG
GTGCAAGTCACCTCGGCGGCCTTGGAGATTGAAGACCGAAAGAAAGAGCA
CGCCATAGGTACACCAGGGGCGGGGCTTGAGGTGGAACCGTATAGCAAGC
CGTTCACGGCGGAGAAGATGTTGGTGGCTGTGGGGACAACGCCAGCCCGC
AGGCCCGATTTTGAATTTGACGGGGTGCACATCATTGATAGTGATGATTT
GCTCAGTGGGTCGATTCAGAAGGTACCGCGGGAGCTGATTGTGGTGGGGG
CGGGCGTGATTGGGATGGAGTATGCGAGTATGTTTAATGTTATCCCCGGG
TCGAGGGTAACGGTGATTGATGGACGTCCGGATATCTTGACGTTCGCGGA
TAAAGAGATCATCCAGAGCTTGGAATATGAAATGCGTCAGAAGGGGGCTC
GGTTTTTGTTGGGGGAGGAGGTGTTGAGTGCTCGGATTGAGGGTGATCAT
GTGGTAGCGGATATGGCGAGCGGCAAAGTGCTGAGGGGGGATTGCCTGTT
GTACACCGTGGGGAGGCAAGGGAACACGGCGGGATTGTGCTTGGAAAAGA
CGGGTTTGGAGGTGAATAAACGAGGGCTTTTGACGATCAATGATAACTAT
CAAACATCTGTCCCGTGGTTATATGCCGCTGGCGATTGTATTGGATTTCC
TGCCCTGGCCTCGACCTCCTCGCAGCAGGGGCGGATGGCGGCGCATCACA
TGTGGGGGGAGGAGGGGGAGGAGGCAAATAAGGCCTTTGGGGGTTTCCCG
TATGGAATCTACACAATCCCGGAGATTTCGATGGTGGGCTACACGGAGCA
GCAGTTAACACAGCAAAAGATTCCCTATGAGATGGGCGTGGCGAGATATG
ATGAGTTGGCGAAGGGGCAGATGATGGGGGGGAGTAATGGGATGTTGAAG
ATTTTGTTCCATGCGGAGACATTGAAAATTTTGGGCGTGCATTGTATGGG
TGAGAGTGCGACGGAAATTGTGCATGTGGGCCAAGTAGCGATGGATATGA
ATCTGGATATGCATTTTTTGACGGAAAATGTTTTCAATTACCCGACATTT
GCCGAGTCATATCGGGTGGCGGCGTTTAATGGATTGAAGAGGTTGGCCTT
GGCGGGGTATACTGACTTGTCGGACCATGGGGCGGCGTCGTCGCCTTAAA
GTTTTATAGCGAAGAGAGGGATGGAGCAAAACGATTTTGTGGGTGTACCA
GGTTGTAAAGAAAAAAGAGAGGGAGTGTTTTCTAGACGCGAAATAAAGAA
ATCAGGTATCGTATGAGCGGA back to topCoding sequence (CDS) from alignment at scaffold_2:430054..432024- >mRNA_786 ID=mRNA_786|Name=jgi.p|Nanoce1779_2|574130|organism=Nannochloropsis oceanica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_2:430054..432024- (Nannochloropsis oceanica)
CCGCCCAAGCCTGCGCCATCTCTTCCAGCCGACGTGGCAAGAGGGTTGCT
GTCATTGACAAGCCCGGTGTGCTTGGTGGGGTGTGCGTCAACACGGGCAC
GATACCTAGCAAAACGTTTCGAGAGGCCGTCCTTCATCTGACGGGCTATC
GGCACCAAGGCTTTTACGGCAAGGTCTACGCGCCATCGGATCGCATCAGT
ATGGAGGGGATACTGCATCGTGTCTCAATGGTGGTAAAGGGCGAGAAGGA
TGTGATGCGGAATCGTTTTCGGCAATACGGCATTACCCACATCTATGGCA
CGGCACAATTTACGGGGGAAGAGAAGTCGGTGCAAGTCACCTCGGCGGCC
TTGGAGATTGAAGACCGAAAGAAAGAGCACGCCATAGGTACACCAGGGGC
GGGGCTTGAGGTGGAACCGTATAGCAAGCCGTTCACGGCGGAGAAGATGT
TGGTGGCTGTGGGGACAACGCCAGCCCGCAGGCCCGATTTTGAATTTGAC
GGGGTGCACATCATTGATAGTGATGATTTGCTCAGTGGGTCGATTCAGAA
GGTACCGCGGGAGCTGATTGTGGTGGGGGCGGGCGTGATTGGGATGGAGT
ATGCGAGTATGTTTAATGTTATCCCCGGGTCGAGGGTAACGGTGATTGAT
GGACGTCCGGATATCTTGACGTTCGCGGATAAAGAGATCATCCAGAGCTT
GGAATATGAAATGCGTCAGAAGGGGGCTCGGTTTTTGTTGGGGGAGGAGG
TGTTGAGTGCTCGGATTGAGGGTGATCATGTGGTAGCGGATATGGCGAGC
GGCAAAGTGCTGAGGGGGGATTGCCTGTTGTACACCGTGGGGAGGCAAGG
GAACACGGCGGGATTGTGCTTGGAAAAGACGGGTTTGGAGGTGAATAAAC
GAGGGCTTTTGACGATCAATGATAACTATCAAACATCTGTCCCGTGGTTA
TATGCCGCTGGCGATTGTATTGGATTTCCTGCCCTGGCCTCGACCTCCTC
GCAGCAGGGGCGGATGGCGGCGCATCACATGTGGGGGGAGGAGGGGGAGG
AGGCAAATAAGGCCTTTGGGGGTTTCCCGTATGGAATCTACACAATCCCG
GAGATTTCGATGGTGGGCTACACGGAGCAGCAGTTAACACAGCAAAAGAT
TCCCTATGAGATGGGCGTGGCGAGATATGATGAGTTGGCGAAGGGGCAGA
TGATGGGGGGGAGTAATGGGATGTTGAAGATTTTGTTCCATGCGGAGACA
TTGAAAATTTTGGGCGTGCATTGTATGGGTGAGAGTGCGACGGAAATTGT
GCATGTGGGCCAAGTAGCGATGGATATGAATCTGGATATGCATTTTTTGA
CGGAAAATGTTTTCAATTACCCGACATTTGCCGAGTCATATCGGGTGGCG
GCGTTTAATGGATTGAAGAGGTTGGCCTTGGCGGGGTATACTGACTTGTC
GGACCATGGGGCGGCGTCGTCGCCTTAAATGCTGATGGCAGCTGGTAGCG
CAGTCAGGAGACGTCTGCTACCTGTCGTTGCGGGGCTACCGCGCGTCCGC
CTCCCCATAATGTCCCAGCAGAGTTGCCGTGCATTTGCCAACGACAGCGC
CTCGAAAAAGGACGACGAGGCCACCACTAAAGTCCCCATACATCCCGCCA
ACGCCAACCCCTTTCCCACCGCTGGTGCGCATGCGGGCAAACCTGATTTT
GATCTTATTGTAATAGGCTCTGGTCCAGCCGCCCAAGCCTGCGCCATCTC
TTCCAGCCGACGTGGCAAGAGGGTTGCTGTCATTGACAAGCCCGGTGTGC
TTGGTGGGGTGTGCGTCAACACGGGCACGATACCTAGCAAAACGTTTCGA
GAGGCCGTCCTTCATCTGACGGGCTATCGGCACCAAGGCTTTTACGGCAA
GGTCTACGCGCCATCGGATCGCATCAGTATGGAGGGGATACTGCATCGTG
TCTCAATGGTGGTAAAGGGCGAGAAGGATGTGATGCGGAATCGTTTTCGG
CAATACGGCATTACCCACATCTATGGCACGGCACAATTTACGGGGGAAGA
GAAGTCGGTGCAAGTCACCTCGGCGGCCTTGGAGATTGAAGACCGAAAGA
AAGAGCACGCCATAGGTACACCAGGGGCGGGGCTTGAGGTGGAACCGTAT
AGCAAGCCGTTCACGGCGGAGAAGATGTTGGTGGCTGTGGGGACAACGCC
AGCCCGCAGGCCCGATTTTGAATTTGACGGGGTGCACATCATTGATAGTG
ATGATTTGCTCAGTGGGTCGATTCAGAAGGTACCGCGGGAGCTGATTGTG
GTGGGGGCGGGCGTGATTGGGATGGAGTATGCGAGTATGTTTAATGTTAT
CCCCGGGTCGAGGGTAACGGTGATTGATGGACGTCCGGATATCTTGACGT
TCGCGGATAAAGAGATCATCCAGAGCTTGGAATATGAAATGCGTCAGAAG
GGGGCTCGGTTTTTGTTGGGGGAGGAGGTGTTGAGTGCTCGGATTGAGGG
TGATCATGTGGTAGCGGATATGGCGAGCGGCAAAGTGCTGAGGGGGGATT
GCCTGTTGTACACCGTGGGGAGGCAAGGGAACACGGCGGGATTGTGCTTG
GAAAAGACGGGTTTGGAGGTGAATAAACGAGGGCTTTTGACGATCAATGA
TAACTATCAAACATCTGTCCCGTGGTTATATGCCGCTGGCGATTGTATTG
GATTTCCTGCCCTGGCCTCGACCTCCTCGCAGCAGGGGCGGATGGCGGCG
CATCACATGTGGGGGGAGGAGGGGGAGGAGGCAAATAAGGCCTTTGGGGG
TTTCCCGTATGGAATCTACACAATCCCGGAGATTTCGATGGTGGGCTACA
CGGAGCAGCAGTTAACACAGCAAAAGATTCCCTATGAGATGGGCGTGGCG
AGATATGATGAGTTGGCGAAGGGGCAGATGATGGGGGGGAGTAATGGGAT
GTTGAAGATTTTGTTCCATGCGGAGACATTGAAAATTTTGGGCGTGCATT
GTATGGGTGAGAGTGCGACGGAAATTGTGCATGTGGGCCAAGTAGCGATG
GATATGAATCTGGATATGCATTTTTTGACGGAAAATGTTTTCAATTACCC
GACATTTGCCGAGTCATATCGGGTGGCGGCGTTTAATGGATTGAAGAGGT
TGGCCTTGGCGGGGTATACTGACTTGTCGGACCATGGGGCGGCGTCGTCG
CCTTAAATGCTGATGGCAGCTGGTAGCGCAGTCAGGAGACGTCTGCTACC
TGTCGTTGCGGGGCTACCGCGCGTCCGCCTCCCCATAATGTCCCAGCAGA
GTTGCCGTGCATTTGCCAACGACAGCGCCTCGAAAAAGGACGACGAGGCC
ACCACTAAAGTCCCCATACATCCCGCCAACGCCAACCCCTTTCCCACCGC
TGGTGCGCATGCGGGCAAACCTGATTTTGATCTTATTGTAATAGGCTCTG
GTCCAG back to top
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