jgi.p|Nanoce1779_2|600264, mRNA_7858 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600264
Unique NamemRNA_7858
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length990
Alignment locationscaffold_21:522939..524453 -

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Properties
Property NameValue
TranscriptId600350
TrackFilteredModels2
ProteinId600264
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:522939..524453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600264gene_7858Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600264mRNA_7858-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7858CDS_7858Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7858 ID=mRNA_7858|Name=jgi.p|Nanoce1779_2|600264|organism=Nannochloropsis oceanica|type=mRNA|length=990bp
AACAGGAGTACACGTTATCGTTTTATTTTGAAACATGGCGGACGCTGGGT
GGACGACTGTGGCGGCCAAGCCCAAGAAGAAGCCGACTGCCGGAGGACCG
AAACCTGCGGGTGTAGCGCAGCCCTGGCAATCTCGCCCTGCGCCGTCTGC
TTCTACGTACACGGGTGGGGGATCAGCGTCGTCGGCCAAGAAATTCTCGG
CGGGCGAGAACAAGAGCGCACATACCAATACAGGCGCCAACCTGAGGAAG
CTTGAAGAGGAGACGGAGGACTTCCATGTCGCCCGCGTCGATCGCTCCTT
CTCCGTGGCCCTGGCACAAGCACGCATGGGCAAGGGACTCTCCCAAAAGG
AGCTGGCCACAAGAGTGTGCGAAAAACCCAGTGTCATCAACGACTACGAA
AGCGGCCGGGCCATTCCGAATCCCAACATCATCAACAAGCTCGATCGGGC
CCTCGGCGTGCATTTGCCTCGAGGCAAGAAGAAGTAGAGGGAGGGCGGGA
GGAGGAAGGAAGGAAGAGGGGAGGGAGGGATAGGCGGAGGGATGTGAGAG
AAGAGAGATAATGAAGCACGAAGGGCGGCAGCCGCTGCAACAATAAAGGG
GAAGAAGAAGAAGAAGAGGGAAACAGGACACAAAGAAAGAAGCTTAAGAA
GAAGAAAAAGCAGAAGCAGCAGAAAGATGCAGAAGATGAAGAAGCGACAG
AGGGAGAGACTTCATAATAGTAATTAAGTGAACAATCCCATCCCTCCCCT
CTTCTAAAGTCCCTCCCTTGCCCTCTTCATCCGCCCTTCCCCTGCCTCCC
CCTCACTTTCCACCTCCACTCGTCCCCTCCCTCCTCCTCACTCCTCACCT
CCACTCGTCCTTCTCGATTCTTTGTGATTACCTTCCACCTCCTCCTTCTA
CTACTTTTCCTCCTCCCACCCCCTTCCCTCCCTCCCTCCCTCCCTCTTTC
CTTCAAGCCTACTGCTGCGACTGTCCGGCGTCCATGAGGT
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protein sequence of jgi.p|Nanoce1779_2|600264

>mRNA_7858-protein ID=mRNA_7858-protein|Name=jgi.p|Nanoce1779_2|600264|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MADAGWTTVAAKPKKKPTAGGPKPAGVAQPWQSRPAPSASTYTGGGSASS
AKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGK
GLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK
*
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mRNA from alignment at scaffold_21:522939..524453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7858 ID=mRNA_7858|Name=jgi.p|Nanoce1779_2|600264|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp|location=Sequence derived from alignment at scaffold_21:522939..524453- (Nannochloropsis oceanica)
AACAGGAGTACACGTTATCGTTTTATTTTGAAACATGGCGGACGCTGGGT
GGACGACTGTGGCGGCCAAGCCCAAGAAGAAGCCGACTGCCGGAGGACCG
AAACCTGCGGGTGTAGCGCAGCCCTGGCAATCTCGCCCTGCGCCGTCTGC
TTCTACGTACACGGGTGGGGGATCAGCGTCGTCGGCCAAGAAATGTAAGT
GACTGTATAGAGAGGGCGAAGGAAGATTGGACAGCGGCCGTGGAACATAC
CGTGTTGGTTTCGTGGAGTCGCGAAAGCTTCCTCTCGCACCTCTGACCGT
GGGTCTATTTTCCCCATCTCTCCTCCCTCCTTCAACCCTCCACAGTCTCG
GCGGGCGAGAACAAGAGCGCACATACCAATACAGGCGCCAACCTGAGGAA
GCTTGAAGAGGAGACGGAGGACTTCCATGGTACGTTGATAATCGAAGAGT
GTCAAGGGAGGGAGAGATGAGGGAAAATAGGAGGAAGTTGAGTGGTTGGA
AGGGGAAGGCGGTCGATGCGCGGAGAGAAGGCCCCCCATGTGCCAGTGCA
TGTCTTAATAGGTCATTTGAATCCTTATGCATGCAAGGTGCCGCATGTCC
GACTCTTTATTTCAATGCGCGCGCCTTAGTCCCGCTACGACTTGCCATTC
AATTCCCCCACCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCCCTTTCCTC
AGTCGCCCGCGTCGATCGCTCCTTCTCCGTGGCCCTGGCACAAGCACGCA
TGGGCAAGGGACTCTCCCAAAAGGAGCTGGCCACAAGAGTGTGCGAAAAA
CCCAGTGTCATCAACGACTACGAAAGGTGCGACCTCTCCCTCCATCCCTC
CCTCCCTCAAATGTCATTGGCCTGTATCATGACTTACCCTCCTCCTTCCT
CCCTCCCTCCCCCCCCTCTCCCTTCAGCGGCCGGGCCATTCCGAATCCCA
ACATCATCAACAAGCTCGATCGGGCCCTCGGCGTGCATTTGCCTCGAGGC
AAGAAGAAGTAGAGGGAGGGCGGGAGGAGGAAGGAAGGAAGAGGGGAGGG
AGGGATAGGCGGAGGGATGTGAGAGAAGAGAGATAATGAAGCACGAAGGG
CGGCAGCCGCTGCAACAATAAAGGGGAAGAAGAAGAAGAAGAGGGAAACA
GGACACAAAGAAAGAAGCTTAAGAAGAAGAAAAAGCAGAAGCAGCAGAAA
GATGCAGAAGATGAAGAAGCGACAGAGGGAGAGACTTCATAATAGTAATT
AAGTGAACAATCCCATCCCTCCCCTCTTCTAAAGTCCCTCCCTTGCCCTC
TTCATCCGCCCTTCCCCTGCCTCCCCCTCACTTTCCACCTCCACTCGTCC
CCTCCCTCCTCCTCACTCCTCACCTCCACTCGTCCTTCTCGATTCTTTGT
GATTACCTTCCACCTCCTCCTTCTACTACTTTTCCTCCTCCCACCCCCTT
CCCTCCCTCCCTCCCTCCCTCTTTCCTTCAAGCCTACTGCTGCGACTGTC
CGGCGTCCATGAGGT
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Coding sequence (CDS) from alignment at scaffold_21:522939..524453-

>mRNA_7858 ID=mRNA_7858|Name=jgi.p|Nanoce1779_2|600264|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_21:522939..524453- (Nannochloropsis oceanica)
CGGCCGGGCCATTCCGAATCCCAACATCATCAACAAGCTCGATCGGGCCC
TCGGCGTGCATTTGCCTCGAGGCAAGAAGAAGTAGTCGCCCGCGTCGATC
GCTCCTTCTCCGTGGCCCTGGCACAAGCACGCATGGGCAAGGGACTCTCC
CAAAAGGAGCTGGCCACAAGAGTGTGCGAAAAACCCAGTGTCATCAACGA
CTACGAAAGTCTCGGCGGGCGAGAACAAGAGCGCACATACCAATACAGGC
GCCAACCTGAGGAAGCTTGAAGAGGAGACGGAGGACTTCCATGATGGCGG
ACGCTGGGTGGACGACTGTGGCGGCCAAGCCCAAGAAGAAGCCGACTGCC
GGAGGACCGAAACCTGCGGGTGTAGCGCAGCCCTGGCAATCTCGCCCTGC
GCCGTCTGCTTCTACGTACACGGGTGGGGGATCAGCGTCGTCGGCCAAGA
AATCGGCCGGGCCATTCCGAATCCCAACATCATCAACAAGCTCGATCGGG
CCCTCGGCGTGCATTTGCCTCGAGGCAAGAAGAAGTAGTCGCCCGCGTCG
ATCGCTCCTTCTCCGTGGCCCTGGCACAAGCACGCATGGGCAAGGGACTC
TCCCAAAAGGAGCTGGCCACAAGAGTGTGCGAAAAACCCAGTGTCATCAA
CGACTACGAAAGTCTCGGCGGGCGAGAACAAGAGCGCACATACCAATACA
GGCGCCAACCTGAGGAAGCTTGAAGAGGAGACGGAGGACTTCCATGATGG
CGGACGCTGGGTGGACGACTGTGGCGGCCAAGCCCAAGAAGAAGCCGACT
GCCGGAGGACCGAAACCTGCGGGTGTAGCGCAGCCCTGGCAATCTCGCCC
TGCGCCGTCTGCTTCTACGTACACGGGTGGGGGATCAGCGTCGTCGGCCA
AGAAATCGGCCGGGCCATTCCGAATCCCAACATCATCAACAAGCTCGATC
GGGCCCTCGGCGTGCATTTGCCTCGAGGCAAGAAGAAGTAGTCGCCCGCG
TCGATCGCTCCTTCTCCGTGGCCCTGGCACAAGCACGCATGGGCAAGGGA
CTCTCCCAAAAGGAGCTGGCCACAAGAGTGTGCGAAAAACCCAGTGTCAT
CAACGACTACGAAAGTCTCGGCGGGCGAGAACAAGAGCGCACATACCAAT
ACAGGCGCCAACCTGAGGAAGCTTGAAGAGGAGACGGAGGACTTCCATGA
TGGCGGACGCTGGGTGGACGACTGTGGCGGCCAAGCCCAAGAAGAAGCCG
ACTGCCGGAGGACCGAAACCTGCGGGTGTAGCGCAGCCCTGGCAATCTCG
CCCTGCGCCGTCTGCTTCTACGTACACGGGTGGGGGATCAGCGTCGTCGG
CCAAGAAATCGGCCGGGCCATTCCGAATCCCAACATCATCAACAAGCTCG
ATCGGGCCCTCGGCGTGCATTTGCCTCGAGGCAAGAAGAAGTAGTCGCCC
GCGTCGATCGCTCCTTCTCCGTGGCCCTGGCACAAGCACGCATGGGCAAG
GGACTCTCCCAAAAGGAGCTGGCCACAAGAGTGTGCGAAAAACCCAGTGT
CATCAACGACTACGAAAGTCTCGGCGGGCGAGAACAAGAGCGCACATACC
AATACAGGCGCCAACCTGAGGAAGCTTGAAGAGGAGACGGAGGACTTCCA
TGATGGCGGACGCTGGGTGGACGACTGTGGCGGCCAAGCCCAAGAAGAAG
CCGACTGCCGGAGGACCGAAACCTGCGGGTGTAGCGCAGCCCTGGCAATC
TCGCCCTGCGCCGTCTGCTTCTACGTACACGGGTGGGGGATCAGCGTCGT
CGGCCAAGAAAT
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Synonyms
Publications