jgi.p|Nanoce1779_2|170691, mRNA_7855 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|170691
Unique NamemRNA_7855
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1682
Alignment locationscaffold_21:514042..516112 +

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Properties
Property NameValue
TranscriptId170777
TrackFilteredModels2
ProteinId170691
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:514042..516112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170691gene_7855Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170691mRNA_7855-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7855CDS_7855Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7855 ID=mRNA_7855|Name=jgi.p|Nanoce1779_2|170691|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp
TCTTCCATTACCTATCCAGACAGGAAGCTTAGGGAGTGCCAAACAAGTCA
ACTGAGCTAATTGCCGTTGGAACCAGTCTGTACCCTTACCTCCTCCCCTA
CTGGAGCCCCCATCCCATAGGGCAAATCATAACACACCACACGGGCTACT
TAGAACAATGGCAGGCGCCAAGATGGATGACGACGAGAAACGGGAGGATT
GGTTCGAAGTCATGGGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAG
GATGCCTATAGGAAACTAGCTCTCAAATATCACCCGGATAAGAACCAAGG
CGATCCTAAGGCCGCCGATCGCTTTATGCTTGTAAATAAGGCCAAGATTT
ATTTAGCGGACGATGATAAACGCTCCAAGCTTTCCATGAAAAAGAAAAGG
GAAGCGGCAAGGGAGAAGAGGCACACGCAACGATTCGCGGAGATGGATGC
GCAACGCAAAAGATTCAAGAGTGATTTGGAGGCCAGAGAAGCAGGGGAGA
GGGAGAAAGCTCGAATGCAAAGAACATCAGGAGGAGGAGCAGGAGGAGGG
GGGGGGGGGGAGGAGGGAAGGGGGTAGGGATCAATGCCCATGTGCTGGAT
GAGTTGAGGAAGGTTGGTCTGGCGCAAAGGGAGGCAGAGGCACGAAGAAT
AGAGGAATTAATGCACAAAAGCAACGAGGCAGCAGCGGCGGCTGTGTTTC
GGCGGGCAAAAGAGGAGGAGGAGAAAGGGGGGAATGGGGGAGCGACGACC
CAAAGAGAGGGGAAGGAGATGCATGACGGGCCGGAGGAAGAACCGGAGCA
AGTAGAGGAAGGGAAGGCAGGAGACGCAGCGGTAGCAGCTTCGGCGGCGG
CAGCAGCAGCGGCGGCGTTGGGGATTGGGACATCGACGGAAGTGAAAGCC
AAGTGGAAGAGGAGTACTCTGGCGGAATCGCATTCGGACGAAAGCCTGTA
TCAGCTCCTTGTGAGGTTTGGCCCGATCAAGAGAGTAGAGATGACGGGGA
TTAAGGGCAACACAGCCACGATCATCTTCGATGAACGTAGTGCTGCCGAG
CGCGCAGTCGCCGCTTATGAATTCGATGCCAACATGCGTCTCTCCATCCC
AGCCGACAGAAAATACAAACTTTTCCTTCCTCAGGTGCTTAAACCGCCAG
CAGCCGCGGGAGCAGGAGTAGCCGGAGCAGGAGGAGTAGCAAGAGCAGGA
GCAGGAACAAGAACAGGAGCAGCAGCTGCAGGGAAACCATCGTCTTTGTT
CATGGGCGTTTGGGGCGCAGGATCGGGAGGTGCAGGGAATGGGGGAAAAG
GAGCAGGAGGAGCAGCGGCAACAACAGCAGCAGGATCGGCAACAAAAGTG
AAGGAGGGGGATGTCTTGGCGCGCATGCGAGCTGCGGCATCGGAACGTAA
GCGAAGGCTGGAAGAACAGGCTGCTGCTGCAGCAGCAGTAACTGTAGCAG
TAAAGGGAGCAAGTGTAACGGCGGGGACAACGACAACAGAATCTTCGAAT
GTGGCGGAAGCGTCTGAAGCAGAGGGGATGAAGGTGATGGCAGCAGTGGG
GAATGAGCAGGAAAAGGAGGCGGAAAGAGAGGAGGAAAGACAAGTCGCTT
GATTGAGAGCTGACGTTTTGGTCATGTACGATAAATAAAAATTAAAAATC
ACGTACGTGTCGACAGGAGTAAACTTTGCGAG
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protein sequence of jgi.p|Nanoce1779_2|170691

>mRNA_7855-protein ID=mRNA_7855-protein|Name=jgi.p|Nanoce1779_2|170691|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MHKSNEAAAAAVFRRAKEEEEKGGNGGATTQREGKEMHDGPEEEPEQVEE
GKAGDAAVAASAAAAAAAALGIGTSTEVKAKWKRSTLAESHSDESLYQLL
VRFGPIKRVEMTGIKGNTATIIFDERSAAERAVAAYEFDANMRLSIPADR
KYKLFLPQVLKPPAAAGAGVAGAGGVARAGAGTRTGAAAAGKPSSLFMGV
WGAGSGGAGNGGKGAGGAAATTAAGSATKVKEGDVLARMRAAASERKRRL
EEQAAAAAAVTVAVKGASVTAGTTTTESSNVAEASEAEGMKVMAAVGNEQ
EKEAEREEERQVA*
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mRNA from alignment at scaffold_21:514042..516112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7855 ID=mRNA_7855|Name=jgi.p|Nanoce1779_2|170691|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp|location=Sequence derived from alignment at scaffold_21:514042..516112+ (Nannochloropsis oceanica)
TCTTCCATTACCTATCCAGACAGGAAGCTTAGGGAGTGCCAAACAAGTCA
ACTGAGCTAATTGCCGTTGGAACCAGTCTGTACCCTTACCTCCTCCCCTA
CTGGAGCCCCCATCCCATAGGGCAAATCATAACACACCACACGGGCTACT
TAGAACAATGGCAGGCGCCAAGATGGATGACGACGAGAAACGGGAGGATT
GGTTCGAAGTCATGGGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAG
GATGGTACGTGTGTATATGTGGTGCTTCGGGTGAATGGGGATGATCATCA
TCTTTCTCTACCACTTCATTACCTATTAGCTCGCCCTTGCTTATCTATAT
GTGTATCATACAACACGTGTATTTCTAGGCTTCTCTCAGGACGCCTCTTT
TTACCAACTTCCAACACCTTACCTACTGCCGACCACCTCATATCCCCCTT
TCTTTCCTCTCTTCATCCCTCCTTCCCCTCCACTGTACAGCCTATAGGAA
ACTAGCTCTCAAATATCACCCGGATAAGAACCAAGGCGATCCTAAGGCCG
CCGATCGCTTTATGCTTGTAAATAAGGCCAAGATTTATTTAGCGGACGAT
GATAAACGCTCCAAGCTTTCCATGAAAAAGAAAAGGGAAGCGGCAAGGGA
GAAGAGGCACACGCAACGATTCGCGGAGATGGATGCGCAACGCAAAAGAT
TCAAGAGTGATTTGGAGGCCAGAGAAGCAGGGGAGAGGGAGAAAGCTCGA
ATGCAAAGAACATCAGGAGGAGGAGCAGGAGGAGGGGGGGGGGGGGAGGA
GGGAAGGGGGTAGGGATCAATGCCCATGTGCTGGATGAGTTGAGGAAGGT
TGGTCTGGCGCAAAGGGAGGCAGAGGCACGAAGAATAGAGGAATTAATGC
ACAAAAGCAACGAGGCAGCAGCGGCGGCTGTGTTTCGGCGGGCAAAAGAG
GAGGAGGAGAAAGGGGGGAATGGGGGAGCGACGACCCAAAGAGAGGGGAA
GGAGATGCATGACGGGCCGGAGGAAGAACCGGAGCAAGTAGAGGAAGGGA
AGGCAGGAGACGCAGCGGTAGCAGCTTCGGCGGCGGCAGCAGCAGCGGCG
GCGTTGGGGATTGGGACATCGACGGAAGTGAAAGCCAAGTGGAAGAGGAG
TACTCTGGCGGAATCGCATTCGGACGAAAGCCTGTATCAGCTCCTTGTGA
GGTTTGGCCCGATCAAGAGAGTAGAGATGACGGGGATTAAGGTGAGCAAA
GAAGGATTGGAAGGAAGGAGAGATTGGTAGCGGGAGTGTCATCACCCAAT
CCTCGCGTCATTTATATTTAACTTTGCTTTCTTACCCCCCTCACGTTCCA
TCCCTCCCTCCCCCCTTTCCTCCTTTTTACCTACTATATTACAGGGCAAC
ACAGCCACGATCATCTTCGATGAACGTAGTGCTGCCGAGCGCGCAGTCGC
CGCTTATGAATTCGATGCCAACATGCGTCTCTCCATCCCAGCCGACAGAA
AATACAAACTTTTCCTTCCTCAGGTGCTTAAACCGCCAGCAGCCGCGGGA
GCAGGAGTAGCCGGAGCAGGAGGAGTAGCAAGAGCAGGAGCAGGAACAAG
AACAGGAGCAGCAGCTGCAGGGAAACCATCGTCTTTGTTCATGGGCGTTT
GGGGCGCAGGATCGGGAGGTGCAGGGAATGGGGGAAAAGGAGCAGGAGGA
GCAGCGGCAACAACAGCAGCAGGATCGGCAACAAAAGTGAAGGAGGGGGA
TGTCTTGGCGCGCATGCGAGCTGCGGCATCGGAACGTAAGCGAAGGCTGG
AAGAACAGGCTGCTGCTGCAGCAGCAGTAACTGTAGCAGTAAAGGGAGCA
AGTGTAACGGCGGGGACAACGACAACAGAATCTTCGAATGTGGCGGAAGC
GTCTGAAGCAGAGGGGATGAAGGTGATGGCAGCAGTGGGGAATGAGCAGG
AAAAGGAGGCGGAAAGAGAGGAGGAAAGACAAGTCGCTTGATTGAGAGCT
GACGTTTTGGTCATGTACGATAAATAAAAATTAAAAATCACGTACGTGTC
GACAGGAGTAAACTTTGCGAG
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Coding sequence (CDS) from alignment at scaffold_21:514042..516112+

>mRNA_7855 ID=mRNA_7855|Name=jgi.p|Nanoce1779_2|170691|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_21:514042..516112+ (Nannochloropsis oceanica)
ATGCACAAAAGCAACGAGGCAGCAGCGGCGGCTGTGTTTCGGCGGGCAAA
AGAGGAGGAGGAGAAAGGGGGGAATGGGGGAGCGACGACCCAAAGAGAGG
GGAAGGAGATGCATGACGGGCCGGAGGAAGAACCGGAGCAAGTAGAGGAA
GGGAAGGCAGGAGACGCAGCGGTAGCAGCTTCGGCGGCGGCAGCAGCAGC
GGCGGCGTTGGGGATTGGGACATCGACGGAAGTGAAAGCCAAGTGGAAGA
GGAGTACTCTGGCGGAATCGCATTCGGACGAAAGCCTGTATCAGCTCCTT
GTGAGGTTTGGCCCGATCAAGAGAGTAGAGATGACGGGGATTAAGGGCAA
CACAGCCACGATCATCTTCGATGAACGTAGTGCTGCCGAGCGCGCAGTCG
CCGCTTATGAATTCGATGCCAACATGCGTCTCTCCATCCCAGCCGACAGA
AAATACAAACTTTTCCTTCCTCAGGTGCTTAAACCGCCAGCAGCCGCGGG
AGCAGGAGTAGCCGGAGCAGGAGGAGTAGCAAGAGCAGGAGCAGGAACAA
GAACAGGAGCAGCAGCTGCAGGGAAACCATCGTCTTTGTTCATGGGCGTT
TGGGGCGCAGGATCGGGAGGTGCAGGGAATGGGGGAAAAGGAGCAGGAGG
AGCAGCGGCAACAACAGCAGCAGGATCGGCAACAAAAGTGAAGGAGGGGG
ATGTCTTGGCGCGCATGCGAGCTGCGGCATCGGAACGTAAGCGAAGGCTG
GAAGAACAGGCTGCTGCTGCAGCAGCAGTAACTGTAGCAGTAAAGGGAGC
AAGTGTAACGGCGGGGACAACGACAACAGAATCTTCGAATGTGGCGGAAG
CGTCTGAAGCAGAGGGGATGAAGGTGATGGCAGCAGTGGGGAATGAGCAG
GAAAAGGAGGCGGAAAGAGAGGAGGAAAGACAAGTCGCTTGAATGCACAA
AAGCAACGAGGCAGCAGCGGCGGCTGTGTTTCGGCGGGCAAAAGAGGAGG
AGGAGAAAGGGGGGAATGGGGGAGCGACGACCCAAAGAGAGGGGAAGGAG
ATGCATGACGGGCCGGAGGAAGAACCGGAGCAAGTAGAGGAAGGGAAGGC
AGGAGACGCAGCGGTAGCAGCTTCGGCGGCGGCAGCAGCAGCGGCGGCGT
TGGGGATTGGGACATCGACGGAAGTGAAAGCCAAGTGGAAGAGGAGTACT
CTGGCGGAATCGCATTCGGACGAAAGCCTGTATCAGCTCCTTGTGAGGTT
TGGCCCGATCAAGAGAGTAGAGATGACGGGGATTAAGGGCAACACAGCCA
CGATCATCTTCGATGAACGTAGTGCTGCCGAGCGCGCAGTCGCCGCTTAT
GAATTCGATGCCAACATGCGTCTCTCCATCCCAGCCGACAGAAAATACAA
ACTTTTCCTTCCTCAGGTGCTTAAACCGCCAGCAGCCGCGGGAGCAGGAG
TAGCCGGAGCAGGAGGAGTAGCAAGAGCAGGAGCAGGAACAAGAACAGGA
GCAGCAGCTGCAGGGAAACCATCGTCTTTGTTCATGGGCGTTTGGGGCGC
AGGATCGGGAGGTGCAGGGAATGGGGGAAAAGGAGCAGGAGGAGCAGCGG
CAACAACAGCAGCAGGATCGGCAACAAAAGTGAAGGAGGGGGATGTCTTG
GCGCGCATGCGAGCTGCGGCATCGGAACGTAAGCGAAGGCTGGAAGAACA
GGCTGCTGCTGCAGCAGCAGTAACTGTAGCAGTAAAGGGAGCAAGTGTAA
CGGCGGGGACAACGACAACAGAATCTTCGAATGTGGCGGAAGCGTCTGAA
GCAGAGGGGATGAAGGTGATGGCAGCAGTGGGGAATGAGCAGGAAAAGGA
GGCGGAAAGAGAGGAGGAAAGACAAGTCGCTTGA
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Synonyms
Publications