jgi.p|Nanoce1779_2|632560, mRNA_7854 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632560
Unique NamemRNA_7854
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length420
Alignment locationscaffold_21:514199..514854 +

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Properties
Property NameValue
TranscriptId632646
TrackFilteredModels2
ProteinId632560
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:514199..514854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632560gene_7854Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632560mRNA_7854-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7854CDS_7854Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7854 ID=mRNA_7854|Name=jgi.p|Nanoce1779_2|632560|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGGCAGGCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGA
AGTCATGGGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGCCT
ATAGGAAACTAGCTCTCAAATATCACCCGGATAAGAACCAAGGCGATCCT
AAGGCCGCCGATCGCTTTATGCTTGTAAATAAGGCCAAGATTTATTTAGC
GGACGATGATAAACGCTCCAAGCTTTCCATGAAAAAGAAAAGGGAAGCGG
CAAGGGAGAAGAGGCACACGCAACGATTCGCGGAGATGGATGCGCAACGC
AAAAGATTCAAGAGTGATTTGGAGGCCAGAGAAGCAGGGGAGAGGGAGAA
AGCTCGAATGCAAAGAACATCAGGAGGAGGAGCAGGAGGAGGGGGGGGGG
GGGAGGAGGGAAGGGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|632560

>mRNA_7854-protein ID=mRNA_7854-protein|Name=jgi.p|Nanoce1779_2|632560|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MAGAKMDDDEKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDP
KAADRFMLVNKAKIYLADDDKRSKLSMKKKREAAREKRHTQRFAEMDAQR
KRFKSDLEAREAGEREKARMQRTSGGGAGGGGGGEEGRG*
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mRNA from alignment at scaffold_21:514199..514854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7854 ID=mRNA_7854|Name=jgi.p|Nanoce1779_2|632560|organism=Nannochloropsis oceanica|type=mRNA|length=656bp|location=Sequence derived from alignment at scaffold_21:514199..514854+ (Nannochloropsis oceanica)
ATGGCAGGCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGA
AGTCATGGGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGGTA
CGTGTGTATATGTGGTGCTTCGGGTGAATGGGGATGATCATCATCTTTCT
CTACCACTTCATTACCTATTAGCTCGCCCTTGCTTATCTATATGTGTATC
ATACAACACGTGTATTTCTAGGCTTCTCTCAGGACGCCTCTTTTTACCAA
CTTCCAACACCTTACCTACTGCCGACCACCTCATATCCCCCTTTCTTTCC
TCTCTTCATCCCTCCTTCCCCTCCACTGTACAGCCTATAGGAAACTAGCT
CTCAAATATCACCCGGATAAGAACCAAGGCGATCCTAAGGCCGCCGATCG
CTTTATGCTTGTAAATAAGGCCAAGATTTATTTAGCGGACGATGATAAAC
GCTCCAAGCTTTCCATGAAAAAGAAAAGGGAAGCGGCAAGGGAGAAGAGG
CACACGCAACGATTCGCGGAGATGGATGCGCAACGCAAAAGATTCAAGAG
TGATTTGGAGGCCAGAGAAGCAGGGGAGAGGGAGAAAGCTCGAATGCAAA
GAACATCAGGAGGAGGAGCAGGAGGAGGGGGGGGGGGGGAGGAGGGAAGG
GGGTAG
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Coding sequence (CDS) from alignment at scaffold_21:514199..514854+

>mRNA_7854 ID=mRNA_7854|Name=jgi.p|Nanoce1779_2|632560|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_21:514199..514854+ (Nannochloropsis oceanica)
ATGGCAGGCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGA
AGTCATGGGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGCCT
ATAGGAAACTAGCTCTCAAATATCACCCGGATAAGAACCAAGGCGATCCT
AAGGCCGCCGATCGCTTTATGCTTGTAAATAAGGCCAAGATTTATTTAGC
GGACGATGATAAACGCTCCAAGCTTTCCATGAAAAAGAAAAGGGAAGCGG
CAAGGGAGAAGAGGCACACGCAACGATTCGCGGAGATGGATGCGCAACGC
AAAAGATTCAAGAGTGATTTGGAGGCCAGAGAAGCAGGGGAGAGGGAGAA
AGCTCGAATGCAAAGAACATCAGGAGGAGGAGCAGGAGGAGGGGGGGGGG
GGGAGGAGGGAAGGGGGTAGATGGCAGGCGCCAAGATGGATGACGACGAG
AAACGGGAGGATTGGTTCGAAGTCATGGGGCTTTCGTGGGATGCGACGGC
GGACGACGTAAAGGATGCCTATAGGAAACTAGCTCTCAAATATCACCCGG
ATAAGAACCAAGGCGATCCTAAGGCCGCCGATCGCTTTATGCTTGTAAAT
AAGGCCAAGATTTATTTAGCGGACGATGATAAACGCTCCAAGCTTTCCAT
GAAAAAGAAAAGGGAAGCGGCAAGGGAGAAGAGGCACACGCAACGATTCG
CGGAGATGGATGCGCAACGCAAAAGATTCAAGAGTGATTTGGAGGCCAGA
GAAGCAGGGGAGAGGGAGAAAGCTCGAATGCAAAGAACATCAGGAGGAGG
AGCAGGAGGAGGGGGGGGGGGGGAGGAGGGAAGGGGGTAG
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Synonyms
Publications