jgi.p|Nanoce1779_2|623902, mRNA_7853 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623902
Unique Name	mRNA_7853
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2097
Alignment location	scaffold_21:511000..513420 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623988
Track	FilteredModels2
ProteinId	623902

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:511000..513420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623902	gene_7853	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623902	mRNA_7853-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7853	CDS_7853	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:511000..513420+
coding sequence from alignment at scaffold_21:511000..513420+

mRNA sequence

>mRNA_7853 ID=mRNA_7853|Name=jgi.p|Nanoce1779_2|623902|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp
ATGGGGCGGAAGCGGGATGCGGTAATAGAAAGTGAGCGGGCGAGTGGTCG
CTTGGCAGTGGCGGCTGCTATGCATGCGGATGACTTGTCGAGCGACGATG
AGGACGGAGGGGGAGGACGAGGAGGGGAGGGGAAGAATGCGATTGGTAGG
GTGCCGTTGCATTGGTACGATGACTATGAACATCTGGGCTATGATGTGCA
CGGGCAGAAGGTGATGAAGAGCAAGAAAGCCGATGGGCTGGACGCGGCCT
TGGCGAGTCGCGACGACCCCAACTACGCGCGGACCGTGTACGATGCTGTG
CACGACAAACACATCATTCTCTCCGACCGTGACCTGGAAATCATTCGACG
GCTACAAAAGGGCGCATTCGCGCACCCAGAACACGAGGCGTACCCTCCTC
AAGTGGACGTGTATTGCGATGAATTGAACATCTTTGGTCCGTCCATAGCC
GAGCCCAAGAGGCGGTTCGTCCCTTCGAAATGGGAGTTGATGAAGGTGAC
CCGGATGGTCAAAGCCATCAAGGAAGGGAGGATGGTGGTGGGCAAGGGGG
GAGAAGCCGCCGCAGCACGGGAAAAAAGGGAAGAAAAACAACGGCAGGTG
TATTTGTTGTGGAAGGAGGAGGAGGGGGAGGACGAGGAAGAGAGGCGTCG
AAAAGGCCCTCGGCACATTCCAGCACCCAAATTACCTTTGCCTGGCCATG
CAGAGAGCTACAACCCGCCGGAGGAGTATCTGTTCAGTAAGGAGGAGGAG
GAGGAGTGGAGGGCTATGGACCCCGAGGACCGCCCCTTGCCCTTTCTTCC
CAAGAAGTTCTCGTCCTTGCGAGCGGTGGGCGCGTACAGCGGCTTTATCA
AGGAGAGGTTTGAGAGGTGTCTCGATCTGTATCTCTGTCCAAGATCATTG
AAGAAGCAGGGGGTGACGGACGCTTCGGTCCTCCTTCCCTCCCTCCCCAA
CCCGAGGGATCTGCGGCCGTTCCCCACGAGCAAGGCCATAGAGTACGTGC
ATGCGTTGGACGGGGGGAGGGTGAGGGCCGTGGCCCTGTCGTTGGACGGA
CAGTACTTGGCTAGTGGGGGGGAGGACGGGCGGGTGTGTCTGTGGGAGGT
GGAAAGTGGGTATTGCCTCAAGACATGGAGGTTGAAGAGGGAGGGAGGGG
GGGAGGGCGGGGGGGAGGACGGGGTGAAAGTGCTAGCGCTGGCTTGGAAT
CCGAACCCCGCGCACCATGTGTTGGCAGTGGCGGGAGGGAGGGGAGGGGC
GTTCTTGCTGAGGACGAGGACAGGGGGGAAGGAGGATGAGGAGGTGACCG
AGGCTTTATTGACTTCTGGGTTGGAAGGCAGCAGGAGCAGCAGTACCACC
AGTGCTGGGAAGAGCATAGGGGTGAAATGGCAAGCATACAAAAGTGCGGA
GGGGGGGGAGGAGGGGGGGGATGACCTGGTGTTGCGGATGGAGGGAGGGG
GGGAGTGTACGAGCGTGCGGTGGCACAGTAAGGGAGATTATCTTGCCAGT
GTGAGTCCTACGGGCGGGAGCCAATCAGTCATGATTCATCAGGTCAGCAA
GGGGAAGACCCAATGCCCCTTCAGGAAGACACATGGCGCCGTCCAAGCCC
TGGCATTCCATCCCAACAAACCCTTCTTTTTCGTAGCTACTCAAACCCAC
ATCCGGGTATACCACCTCCTTAAGCAAGTACTGGTCAAGAAGCTCCTCAC
GGGCTGCAAGTGGATCTCGTCCCTCGACGTTCATCCGTCGGGGGACCATG
TTATTATCTCTTCCTACGACCGACGTGTCGTTTGGTTCGATCTGGACCTC
TCCTCCCTCCCCTTTAAGACCCTAAAATATCACACCAAGGCCGTCCGTGC
CGTGGCCTTCCATCGAACGTATCCCCTCATGGCCTCCGCGGCCGATGACG
GGACTGTGCATGTCTTCCACGCCACAGTGTACGACGACTTGATGCAAAAC
CCCTTGATCGTCCCAGTAAAGATTTTGAGAGGACATGAGGTAGTGAAGGA
GGTAGGGGTCATGGCGATTGCCTTTCACCCATCCCAGCCGTGGGTTGTTT
CAGGGGGTGCAGACGGCAAGGTCATTTTATACCAGGATGCGTATTGA

protein sequence of jgi.p|Nanoce1779_2|623902

>mRNA_7853-protein ID=mRNA_7853-protein|Name=jgi.p|Nanoce1779_2|623902|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MGRKRDAVIESERASGRLAVAAAMHADDLSSDDEDGGGGRGGEGKNAIGR
VPLHWYDDYEHLGYDVHGQKVMKSKKADGLDAALASRDDPNYARTVYDAV
HDKHIILSDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDELNIFGPSIA
EPKRRFVPSKWELMKVTRMVKAIKEGRMVVGKGGEAAAAREKREEKQRQV
YLLWKEEEGEDEEERRRKGPRHIPAPKLPLPGHAESYNPPEEYLFSKEEE
EEWRAMDPEDRPLPFLPKKFSSLRAVGAYSGFIKERFERCLDLYLCPRSL
KKQGVTDASVLLPSLPNPRDLRPFPTSKAIEYVHALDGGRVRAVALSLDG
QYLASGGEDGRVCLWEVESGYCLKTWRLKREGGGEGGGEDGVKVLALAWN
PNPAHHVLAVAGGRGGAFLLRTRTGGKEDEEVTEALLTSGLEGSRSSSTT
SAGKSIGVKWQAYKSAEGGEEGGDDLVLRMEGGGECTSVRWHSKGDYLAS
VSPTGGSQSVMIHQVSKGKTQCPFRKTHGAVQALAFHPNKPFFFVATQTH
IRVYHLLKQVLVKKLLTGCKWISSLDVHPSGDHVIISSYDRRVVWFDLDL
SSLPFKTLKYHTKAVRAVAFHRTYPLMASAADDGTVHVFHATVYDDLMQN
PLIVPVKILRGHEVVKEVGVMAIAFHPSQPWVVSGGADGKVILYQDAY*

mRNA from alignment at scaffold_21:511000..513420+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7853 ID=mRNA_7853|Name=jgi.p|Nanoce1779_2|623902|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at scaffold_21:511000..513420+ (Nannochloropsis oceanica)
ATGGGGCGGAAGCGGGATGCGGTAATAGAAAGTGAGCGGGCGAGTGGTCG
CTTGGCAGTGGCGGCTGCTATGCATGCGGATGACTTGTCGAGCGACGATG
AGGACGGAGGGGGAGGACGAGGAGGGGAGGGGAAGAATGCGATTGGTAGG
GTGCCGTTGCATTGGTACGATGACTATGAACATCTGGGCTATGATGTGCA
CGGGCAGAAGGTGATGAAGAGCAAGAAAGCCGATGGGCTGGACGCGGCCT
TGGCGAGGTAAGGAGGGAGGGAGGGGGGAAAGGGGGGAGGGGGGTAAGGA
ATGAAAAAGCAAATGTGGACGAATCAGAGGAGTGGGTGTGTGTGCATATA
TACGTATGAACATGTACATGCCTTTGTCTACTGCCGTGGACCCAGACATT
TGCCTCCTTTTTGAAAAAACACCGTCACTCATCCTCCCTTCCCTCCCTCC
CTCCCTATTTCCCTTCCTCTCCCTCTGTCGCGACAACCCCAATCACGCAC
GGATGGTGCACGACGCTGTGCACGACAAACACATCATTCTCACTCACCCT
CCCTCCCTTCCTTCCCTCTCCATTCCGATAGTCGCGACGACCCCAACTAC
GCGCGGACCGTGTACGATGCTGTGCACGACAAACACATCATTCTCTCCGA
CCGTGACCTGGAAATCATTCGACGGCTACAAAAGGGCGCATTCGCGCACC
CAGAACACGAGGCGTACCCTCCTCAAGTGGACGTGTATTGCGATGAATTG
AACATCTTTGGTCCGTCCATAGCCGAGCCCAAGAGGCGGTTCGTCCCTTC
GAAATGGGAGTTGATGAAGGTGACCCGGATGGTCAAAGCCATCAAGGAAG
GGAGGATGGTGGTGGGCAAGGGGGGAGAAGCCGCCGCAGCACGGGAAAAA
AGGGAAGAAAAACAACGGCAGGTGTATTTGTTGTGGAAGGAGGAGGAGGG
GGAGGACGAGGAAGAGAGGCGTCGAAAAGGCCCTCGGCACATTCCAGCAC
CCAAATTACCTTTGCCTGGCCATGCAGAGAGCTACAACCCGCCGGAGGAG
TATCTGTTCAGTAAGGAGGAGGAGGAGGAGTGGAGGGCTATGGACCCCGA
GGACCGCCCCTTGCCCTTTCTTCCCAAGAAGTTCTCGTCCTTGCGAGCGG
TGGGCGCGTACAGCGGCTTTATCAAGGAGAGGTTTGAGAGGTGTCTCGAT
CTGTATCTCTGTCCAAGATCATTGAAGAAGCAGGGGGTGACGGACGCTTC
GGTCCTCCTTCCCTCCCTCCCCAACCCGAGGGATCTGCGGCCGTTCCCCA
CGAGCAAGGCCATAGAGTACGTGCATGCGTTGGACGGGGGGAGGGTGAGG
GCCGTGGCCCTGTCGTTGGACGGACAGTACTTGGCTAGTGGGGGGGAGGA
CGGGCGGGTGTGTCTGTGGGAGGTGGAAAGTGGGTATTGCCTCAAGACAT
GGAGGTTGAAGAGGGAGGGAGGGGGGGAGGGCGGGGGGGAGGACGGGGTG
AAAGTGCTAGCGCTGGCTTGGAATCCGAACCCCGCGCACCATGTGTTGGC
AGTGGCGGGAGGGAGGGGAGGGGCGTTCTTGCTGAGGACGAGGACAGGGG
GGAAGGAGGATGAGGAGGTGACCGAGGCTTTATTGACTTCTGGGTTGGAA
GGCAGCAGGAGCAGCAGTACCACCAGTGCTGGGAAGAGCATAGGGGTGAA
ATGGCAAGCATACAAAAGTGCGGAGGGGGGGGAGGAGGGGGGGGATGACC
TGGTGTTGCGGATGGAGGGAGGGGGGGAGTGTACGAGCGTGCGGTGGCAC
AGTAAGGGAGATTATCTTGCCAGTGTGAGTCCTACGGGCGGGAGCCAATC
AGTCATGATTCATCAGGTCAGCAAGGGGAAGACCCAATGCCCCTTCAGGA
AGACACATGGCGCCGTCCAAGCCCTGGCATTCCATCCCAACAAACCCTTC
TTTTTCGTAGCTACTCAAACCCACATCCGGGTATACCACCTCCTTAAGCA
AGTACTGGTCAAGAAGCTCCTCACGGGCTGCAAGTGGATCTCGTCCCTCG
ACGTTCATCCGTCGGGGGACCATGTTATTATCTCTTCCTACGACCGACGT
GTCGTTTGGTTCGATCTGGACCTCTCCTCCCTCCCCTTTAAGACCCTAAA
ATATCACACCAAGGCCGTCCGTGCCGTGGCCTTCCATCGAACGTATCCCC
TCATGGCCTCCGCGGCCGATGACGGGACTGTGCATGTCTTCCACGCCACA
GTGTACGACGACTTGATGCAAAACCCCTTGATCGTCCCAGTAAAGATTTT
GAGAGGACATGAGGTAGTGAAGGAGGTAGGGGTCATGGCGATTGCCTTTC
ACCCATCCCAGCCGTGGGTTGTTTCAGGGGGTGCAGACGGCAAGGTCATT
TTATACCAGGATGCGTATTGA

Coding sequence (CDS) from alignment at scaffold_21:511000..513420+

>mRNA_7853 ID=mRNA_7853|Name=jgi.p|Nanoce1779_2|623902|organism=Nannochloropsis oceanica|type=CDS|length=4194bp|location=Sequence derived from alignment at scaffold_21:511000..513420+ (Nannochloropsis oceanica)
ATGGGGCGGAAGCGGGATGCGGTAATAGAAAGTGAGCGGGCGAGTGGTCG
CTTGGCAGTGGCGGCTGCTATGCATGCGGATGACTTGTCGAGCGACGATG
AGGACGGAGGGGGAGGACGAGGAGGGGAGGGGAAGAATGCGATTGGTAGG
GTGCCGTTGCATTGGTACGATGACTATGAACATCTGGGCTATGATGTGCA
CGGGCAGAAGGTGATGAAGAGCAAGAAAGCCGATGGGCTGGACGCGGCCT
TGGCGAGTCGCGACGACCCCAACTACGCGCGGACCGTGTACGATGCTGTG
CACGACAAACACATCATTCTCTCCGACCGTGACCTGGAAATCATTCGACG
GCTACAAAAGGGCGCATTCGCGCACCCAGAACACGAGGCGTACCCTCCTC
AAGTGGACGTGTATTGCGATGAATTGAACATCTTTGGTCCGTCCATAGCC
GAGCCCAAGAGGCGGTTCGTCCCTTCGAAATGGGAGTTGATGAAGGTGAC
CCGGATGGTCAAAGCCATCAAGGAAGGGAGGATGGTGGTGGGCAAGGGGG
GAGAAGCCGCCGCAGCACGGGAAAAAAGGGAAGAAAAACAACGGCAGGTG
TATTTGTTGTGGAAGGAGGAGGAGGGGGAGGACGAGGAAGAGAGGCGTCG
AAAAGGCCCTCGGCACATTCCAGCACCCAAATTACCTTTGCCTGGCCATG
CAGAGAGCTACAACCCGCCGGAGGAGTATCTGTTCAGTAAGGAGGAGGAG
GAGGAGTGGAGGGCTATGGACCCCGAGGACCGCCCCTTGCCCTTTCTTCC
CAAGAAGTTCTCGTCCTTGCGAGCGGTGGGCGCGTACAGCGGCTTTATCA
AGGAGAGGTTTGAGAGGTGTCTCGATCTGTATCTCTGTCCAAGATCATTG
AAGAAGCAGGGGGTGACGGACGCTTCGGTCCTCCTTCCCTCCCTCCCCAA
CCCGAGGGATCTGCGGCCGTTCCCCACGAGCAAGGCCATAGAGTACGTGC
ATGCGTTGGACGGGGGGAGGGTGAGGGCCGTGGCCCTGTCGTTGGACGGA
CAGTACTTGGCTAGTGGGGGGGAGGACGGGCGGGTGTGTCTGTGGGAGGT
GGAAAGTGGGTATTGCCTCAAGACATGGAGGTTGAAGAGGGAGGGAGGGG
GGGAGGGCGGGGGGGAGGACGGGGTGAAAGTGCTAGCGCTGGCTTGGAAT
CCGAACCCCGCGCACCATGTGTTGGCAGTGGCGGGAGGGAGGGGAGGGGC
GTTCTTGCTGAGGACGAGGACAGGGGGGAAGGAGGATGAGGAGGTGACCG
AGGCTTTATTGACTTCTGGGTTGGAAGGCAGCAGGAGCAGCAGTACCACC
AGTGCTGGGAAGAGCATAGGGGTGAAATGGCAAGCATACAAAAGTGCGGA
GGGGGGGGAGGAGGGGGGGGATGACCTGGTGTTGCGGATGGAGGGAGGGG
GGGAGTGTACGAGCGTGCGGTGGCACAGTAAGGGAGATTATCTTGCCAGT
GTGAGTCCTACGGGCGGGAGCCAATCAGTCATGATTCATCAGGTCAGCAA
GGGGAAGACCCAATGCCCCTTCAGGAAGACACATGGCGCCGTCCAAGCCC
TGGCATTCCATCCCAACAAACCCTTCTTTTTCGTAGCTACTCAAACCCAC
ATCCGGGTATACCACCTCCTTAAGCAAGTACTGGTCAAGAAGCTCCTCAC
GGGCTGCAAGTGGATCTCGTCCCTCGACGTTCATCCGTCGGGGGACCATG
TTATTATCTCTTCCTACGACCGACGTGTCGTTTGGTTCGATCTGGACCTC
TCCTCCCTCCCCTTTAAGACCCTAAAATATCACACCAAGGCCGTCCGTGC
CGTGGCCTTCCATCGAACGTATCCCCTCATGGCCTCCGCGGCCGATGACG
GGACTGTGCATGTCTTCCACGCCACAGTGTACGACGACTTGATGCAAAAC
CCCTTGATCGTCCCAGTAAAGATTTTGAGAGGACATGAGGTAGTGAAGGA
GGTAGGGGTCATGGCGATTGCCTTTCACCCATCCCAGCCGTGGGTTGTTT
CAGGGGGTGCAGACGGCAAGGTCATTTTATACCAGGATGCGTATTGAATG
GGGCGGAAGCGGGATGCGGTAATAGAAAGTGAGCGGGCGAGTGGTCGCTT
GGCAGTGGCGGCTGCTATGCATGCGGATGACTTGTCGAGCGACGATGAGG
ACGGAGGGGGAGGACGAGGAGGGGAGGGGAAGAATGCGATTGGTAGGGTG
CCGTTGCATTGGTACGATGACTATGAACATCTGGGCTATGATGTGCACGG
GCAGAAGGTGATGAAGAGCAAGAAAGCCGATGGGCTGGACGCGGCCTTGG
CGAGTCGCGACGACCCCAACTACGCGCGGACCGTGTACGATGCTGTGCAC
GACAAACACATCATTCTCTCCGACCGTGACCTGGAAATCATTCGACGGCT
ACAAAAGGGCGCATTCGCGCACCCAGAACACGAGGCGTACCCTCCTCAAG
TGGACGTGTATTGCGATGAATTGAACATCTTTGGTCCGTCCATAGCCGAG
CCCAAGAGGCGGTTCGTCCCTTCGAAATGGGAGTTGATGAAGGTGACCCG
GATGGTCAAAGCCATCAAGGAAGGGAGGATGGTGGTGGGCAAGGGGGGAG
AAGCCGCCGCAGCACGGGAAAAAAGGGAAGAAAAACAACGGCAGGTGTAT
TTGTTGTGGAAGGAGGAGGAGGGGGAGGACGAGGAAGAGAGGCGTCGAAA
AGGCCCTCGGCACATTCCAGCACCCAAATTACCTTTGCCTGGCCATGCAG
AGAGCTACAACCCGCCGGAGGAGTATCTGTTCAGTAAGGAGGAGGAGGAG
GAGTGGAGGGCTATGGACCCCGAGGACCGCCCCTTGCCCTTTCTTCCCAA
GAAGTTCTCGTCCTTGCGAGCGGTGGGCGCGTACAGCGGCTTTATCAAGG
AGAGGTTTGAGAGGTGTCTCGATCTGTATCTCTGTCCAAGATCATTGAAG
AAGCAGGGGGTGACGGACGCTTCGGTCCTCCTTCCCTCCCTCCCCAACCC
GAGGGATCTGCGGCCGTTCCCCACGAGCAAGGCCATAGAGTACGTGCATG
CGTTGGACGGGGGGAGGGTGAGGGCCGTGGCCCTGTCGTTGGACGGACAG
TACTTGGCTAGTGGGGGGGAGGACGGGCGGGTGTGTCTGTGGGAGGTGGA
AAGTGGGTATTGCCTCAAGACATGGAGGTTGAAGAGGGAGGGAGGGGGGG
AGGGCGGGGGGGAGGACGGGGTGAAAGTGCTAGCGCTGGCTTGGAATCCG
AACCCCGCGCACCATGTGTTGGCAGTGGCGGGAGGGAGGGGAGGGGCGTT
CTTGCTGAGGACGAGGACAGGGGGGAAGGAGGATGAGGAGGTGACCGAGG
CTTTATTGACTTCTGGGTTGGAAGGCAGCAGGAGCAGCAGTACCACCAGT
GCTGGGAAGAGCATAGGGGTGAAATGGCAAGCATACAAAAGTGCGGAGGG
GGGGGAGGAGGGGGGGGATGACCTGGTGTTGCGGATGGAGGGAGGGGGGG
AGTGTACGAGCGTGCGGTGGCACAGTAAGGGAGATTATCTTGCCAGTGTG
AGTCCTACGGGCGGGAGCCAATCAGTCATGATTCATCAGGTCAGCAAGGG
GAAGACCCAATGCCCCTTCAGGAAGACACATGGCGCCGTCCAAGCCCTGG
CATTCCATCCCAACAAACCCTTCTTTTTCGTAGCTACTCAAACCCACATC
CGGGTATACCACCTCCTTAAGCAAGTACTGGTCAAGAAGCTCCTCACGGG
CTGCAAGTGGATCTCGTCCCTCGACGTTCATCCGTCGGGGGACCATGTTA
TTATCTCTTCCTACGACCGACGTGTCGTTTGGTTCGATCTGGACCTCTCC
TCCCTCCCCTTTAAGACCCTAAAATATCACACCAAGGCCGTCCGTGCCGT
GGCCTTCCATCGAACGTATCCCCTCATGGCCTCCGCGGCCGATGACGGGA
CTGTGCATGTCTTCCACGCCACAGTGTACGACGACTTGATGCAAAACCCC
TTGATCGTCCCAGTAAAGATTTTGAGAGGACATGAGGTAGTGAAGGAGGT
AGGGGTCATGGCGATTGCCTTTCACCCATCCCAGCCGTGGGTTGTTTCAG
GGGGTGCAGACGGCAAGGTCATTTTATACCAGGATGCGTATTGA

Synonyms

Publications