jgi.p|Nanoce1779_2|600245, mRNA_7850 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600245
Unique NamemRNA_7850
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1049
Alignment locationscaffold_21:504216..505264 +

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Properties
Property NameValue
TranscriptId600331
TrackFilteredModels2
ProteinId600245
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:504216..505264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600245gene_7850Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600245mRNA_7850-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7850CDS_7850Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7850 ID=mRNA_7850|Name=jgi.p|Nanoce1779_2|600245|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp
ACAGCAAGGCCTATGGATGCTGCCGAAGAGCAAGAAGACGACGCTATCAC
TACAGGCACTGGTAGCAGCAAGCTGTGCGAGTATCTACGTGTTCTGGCTG
CCTTCCGACGGCAATGCGAGGTACAGGGCAAGTATCGAGAGGCCAAACGG
GCACATGAGCAGCTGCAGCGTCTCTTTCGCGAGGAAGAGGACCGTCGATG
CCAAGAGTGGTTAGATCGGCATGCTTTGGAGAGGAAAGAGATGGAAGGGA
CACATGAGCAACAAGTGTACGATTTTCACGGGCGGTGGGCCGCTTTCTTG
GACGAGTATAAGCGAACGAGCGAGGCATCTATCCAAGCTATGAAAGTCCG
TCACGCCGAGGAATTGGGCAGATTAATAGAATCCGAGTCTGAGCAAGAAG
GACGCGACGATAAAGGAGCTCCCTTATGTTCCTCATCCTCGTCCTCCCTC
GCCTCTTTCTCCTCCTTCTCTTCAACCCTTTCCTCCCTCACCACCAGTGG
TAGTAGCACCATCGCTACCACCACTGCTGTAACACCATCCCCAAAACTCT
CGCGGGAGCTGCTTGAATTGCGTCGGAAAGAACAGCGCATGGTCCAGCAA
CATAAGTACAACGAAGCAAATAAAATTAAGAAACTTGCCGATCGCTTAGA
GGCCAAGGAACGTAAACGCTCCGAAGAAGGGCACACCACAGCCATCTCCC
GCAAGCAAGACAAGCTCAGATTACAGCAACAAACAGAGCTGCAGGCATTG
CGGGCTCGAATAGCAACCAAGCGGATGAAGCACGAGAAACACCGGTTGGA
GGATGGACGGAAACTGGCGCAAAGGAATCGGAATTTATTGCTGGTCTTGA
AGGGGAAGCAGAATGTAGAGGCGACGGCGGCCTTTGCTTGTATTAGGAGA
GAGCTGGAGGGTATAGTGGCCGGAGGTGCTGCTGCTGTTGCTGCAGGTGC
TGGTGAAGGGGAGGAGGACGAGCAGGTAGGTAAGGAGGAAAGGGAGGCTA
GCCGGAAGAGATGAGAGAGGAGAAGTGTGGATCAAGAGGGACGAGGAAG
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protein sequence of jgi.p|Nanoce1779_2|600245

>mRNA_7850-protein ID=mRNA_7850-protein|Name=jgi.p|Nanoce1779_2|600245|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MDAAEEQEDDAITTGTGSSKLCEYLRVLAAFRRQCEVQGKYREAKRAHEQ
LQRLFREEEDRRCQEWLDRHALERKEMEGTHEQQVYDFHGRWAAFLDEYK
RTSEASIQAMKVRHAEELGRLIESESEQEGRDDKGAPLCSSSSSSLASFS
SFSSTLSSLTTSGSSTIATTTAVTPSPKLSRELLELRRKEQRMVQQHKYN
EANKIKKLADRLEAKERKRSEEGHTTAISRKQDKLRLQQQTELQALRARI
ATKRMKHEKHRLEDGRKLAQRNRNLLLVLKGKQNVEATAAFACIRRELEG
IVAGGAAAVAAGAGEGEEDEQVGKEEREASRKR*
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mRNA from alignment at scaffold_21:504216..505264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7850 ID=mRNA_7850|Name=jgi.p|Nanoce1779_2|600245|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp|location=Sequence derived from alignment at scaffold_21:504216..505264+ (Nannochloropsis oceanica)
ACAGCAAGGCCTATGGATGCTGCCGAAGAGCAAGAAGACGACGCTATCAC
TACAGGCACTGGTAGCAGCAAGCTGTGCGAGTATCTACGTGTTCTGGCTG
CCTTCCGACGGCAATGCGAGGTACAGGGCAAGTATCGAGAGGCCAAACGG
GCACATGAGCAGCTGCAGCGTCTCTTTCGCGAGGAAGAGGACCGTCGATG
CCAAGAGTGGTTAGATCGGCATGCTTTGGAGAGGAAAGAGATGGAAGGGA
CACATGAGCAACAAGTGTACGATTTTCACGGGCGGTGGGCCGCTTTCTTG
GACGAGTATAAGCGAACGAGCGAGGCATCTATCCAAGCTATGAAAGTCCG
TCACGCCGAGGAATTGGGCAGATTAATAGAATCCGAGTCTGAGCAAGAAG
GACGCGACGATAAAGGAGCTCCCTTATGTTCCTCATCCTCGTCCTCCCTC
GCCTCTTTCTCCTCCTTCTCTTCAACCCTTTCCTCCCTCACCACCAGTGG
TAGTAGCACCATCGCTACCACCACTGCTGTAACACCATCCCCAAAACTCT
CGCGGGAGCTGCTTGAATTGCGTCGGAAAGAACAGCGCATGGTCCAGCAA
CATAAGTACAACGAAGCAAATAAAATTAAGAAACTTGCCGATCGCTTAGA
GGCCAAGGAACGTAAACGCTCCGAAGAAGGGCACACCACAGCCATCTCCC
GCAAGCAAGACAAGCTCAGATTACAGCAACAAACAGAGCTGCAGGCATTG
CGGGCTCGAATAGCAACCAAGCGGATGAAGCACGAGAAACACCGGTTGGA
GGATGGACGGAAACTGGCGCAAAGGAATCGGAATTTATTGCTGGTCTTGA
AGGGGAAGCAGAATGTAGAGGCGACGGCGGCCTTTGCTTGTATTAGGAGA
GAGCTGGAGGGTATAGTGGCCGGAGGTGCTGCTGCTGTTGCTGCAGGTGC
TGGTGAAGGGGAGGAGGACGAGCAGGTAGGTAAGGAGGAAAGGGAGGCTA
GCCGGAAGAGATGAGAGAGGAGAAGTGTGGATCAAGAGGGACGAGGAAG
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Coding sequence (CDS) from alignment at scaffold_21:504216..505264+

>mRNA_7850 ID=mRNA_7850|Name=jgi.p|Nanoce1779_2|600245|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_21:504216..505264+ (Nannochloropsis oceanica)
ATGGATGCTGCCGAAGAGCAAGAAGACGACGCTATCACTACAGGCACTGG
TAGCAGCAAGCTGTGCGAGTATCTACGTGTTCTGGCTGCCTTCCGACGGC
AATGCGAGGTACAGGGCAAGTATCGAGAGGCCAAACGGGCACATGAGCAG
CTGCAGCGTCTCTTTCGCGAGGAAGAGGACCGTCGATGCCAAGAGTGGTT
AGATCGGCATGCTTTGGAGAGGAAAGAGATGGAAGGGACACATGAGCAAC
AAGTGTACGATTTTCACGGGCGGTGGGCCGCTTTCTTGGACGAGTATAAG
CGAACGAGCGAGGCATCTATCCAAGCTATGAAAGTCCGTCACGCCGAGGA
ATTGGGCAGATTAATAGAATCCGAGTCTGAGCAAGAAGGACGCGACGATA
AAGGAGCTCCCTTATGTTCCTCATCCTCGTCCTCCCTCGCCTCTTTCTCC
TCCTTCTCTTCAACCCTTTCCTCCCTCACCACCAGTGGTAGTAGCACCAT
CGCTACCACCACTGCTGTAACACCATCCCCAAAACTCTCGCGGGAGCTGC
TTGAATTGCGTCGGAAAGAACAGCGCATGGTCCAGCAACATAAGTACAAC
GAAGCAAATAAAATTAAGAAACTTGCCGATCGCTTAGAGGCCAAGGAACG
TAAACGCTCCGAAGAAGGGCACACCACAGCCATCTCCCGCAAGCAAGACA
AGCTCAGATTACAGCAACAAACAGAGCTGCAGGCATTGCGGGCTCGAATA
GCAACCAAGCGGATGAAGCACGAGAAACACCGGTTGGAGGATGGACGGAA
ACTGGCGCAAAGGAATCGGAATTTATTGCTGGTCTTGAAGGGGAAGCAGA
ATGTAGAGGCGACGGCGGCCTTTGCTTGTATTAGGAGAGAGCTGGAGGGT
ATAGTGGCCGGAGGTGCTGCTGCTGTTGCTGCAGGTGCTGGTGAAGGGGA
GGAGGACGAGCAGGTAGGTAAGGAGGAAAGGGAGGCTAGCCGGAAGAGAT
GA
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Synonyms
Publications