jgi.p|Nanoce1779_2|636087, mRNA_785 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636087
Unique Name	mRNA_785
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	732
Alignment location	scaffold_2:428762..429792 +

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Properties


Property Name	Value
TranscriptId	636173
Track	FilteredModels2
ProteinId	636087

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:428762..429792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636087	gene_785	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636087	mRNA_785-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_785	CDS_785	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:428762..429792+
coding sequence from alignment at scaffold_2:428762..429792+

mRNA sequence

>mRNA_785 ID=mRNA_785|Name=jgi.p|Nanoce1779_2|636087|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
ATGGATGCACCACCATCCAGGCCGCAAGACGAAACATGGCATATGCTCTG
GACCTGGAGCAAGCCCCGGATGGAGTCTGCGTCTCTGCTCGCCCACCAGC
AAGTAAATCATATTCCCCGCTCGCAGGATCTGACGCGCAAGGACTTCCTC
GTCCGGCACTTGGACAGGCACATGGCTTTGAGCAGCAGCAGCAGCAGCAG
CACGGGTGGTTCGCGAGCCTACACAAGCTTCGTCGCCACCTTCCGCGATG
GGTCCAGCTTTTCCTCCTCCTCCTCCTCATCTTTCTCGGACAACATTTCG
ATTATTAAACCTTTCAAGGCTTCGCGAGGACGTGGCATTAAACTGGTGAA
TGGCCTTTACACAGAGGGTTTTGCTCGTTTTTGCACGGCGCCCTTCGAGC
TCTACGACTTGAGCAATAAACTTCCACACGTCAGCAACAGTAGTGTCCAG
ACACGCAAAACCATTCGAGGTCAAGGCCCGCCTCTGCCGGGCAACCACCC
TCTCCGATCAGCACCATCTGCGGATGTGGGCGGAAGCAAGCTGCGGCTGT
CCTACCTGTGGCAGCACTTGAGGGATGGCCACGGGATTGACACTTCTGCT
CCGGGGGCTTTTGAATTATTTGGGTTTGATGTCTTGTTGGACACGGAGCT
TCGGCCCTGGCTATTGGAGGTCAATGCCTCGCCTTCCTTGGCACGAGACC
ATACGTTGGACAAGGAGGGAAGGAAGCTTTGA

protein sequence of jgi.p|Nanoce1779_2|636087

>mRNA_785-protein ID=mRNA_785-protein|Name=jgi.p|Nanoce1779_2|636087|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MDAPPSRPQDETWHMLWTWSKPRMESASLLAHQQVNHIPRSQDLTRKDFL
VRHLDRHMALSSSSSSSTGGSRAYTSFVATFRDGSSFSSSSSSSFSDNIS
IIKPFKASRGRGIKLVNGLYTEGFARFCTAPFELYDLSNKLPHVSNSSVQ
TRKTIRGQGPPLPGNHPLRSAPSADVGGSKLRLSYLWQHLRDGHGIDTSA
PGAFELFGFDVLLDTELRPWLLEVNASPSLARDHTLDKEGRKL*

mRNA from alignment at scaffold_2:428762..429792+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_785 ID=mRNA_785|Name=jgi.p|Nanoce1779_2|636087|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp|location=Sequence derived from alignment at scaffold_2:428762..429792+ (Nannochloropsis oceanica)
ATGGATGCACCACCATCCAGGCCGCAAGACGAAACATGGCATATGCTCTG
GACCTGGAGCAAGCCCCGGATGGAGTCTGCGTCTCTGCTCGCCCACCAGC
AAGTAAATCATATTCCCCGCTCGCAGGATCTGACGCGCAAGGACTTCCTC
GTCCGGCACTTGGACAGGCACATGGCTTTGAGCAGCAGCAGCAGCAGCAG
CACGGGTGGTTCGCGAGTTTGCGGCAGGCACCAAAAATCCTCCTCTCTAC
TCAGTTACACAAAGAAATCGACATATCCTTTCTTCCACATCATGCCTCAA
ACGTTTGCTTTGCCACAGGCCTACACAAGCTTCGTCGCCACCTTCCGCGA
TGGGTCCAGCTTTTCCTCCTCCTCCTCCTCATCTTTCTCGGACAACATTT
CGATTATTAAACCTTTCAAGGCTTCGCGAGGACGTGGCATTAAACTGGTG
AATGGTATTCTGGACGTTATCCATAGCGAGCCTGTCGTAATACAAAGATA
TGTGAGTAAGCCTTTGCTTCTGAACGGCTACATTGACCTGCGGCTGTACG
TGCTCGTCAATTCCTTCCAACCGACCCTCGAGGCCTTTACACAGAGGGTT
TTGCTCGTTTTTGCACGGCGCCCTTCGAGCTCTACGACTTGAGCAATAAA
CTTCCACACGTCAGCAACAGTAGTGTCCAGACACGCAAAACCATTCGAGG
TCAAGGCCCGCCTCTGCCGGGCAACCACCCTCTCCGATCAGCACCATCTG
CGGATGTGGGCGGAAGCAAGCTGCGGCTGTCCTACCTGTGGCAGCACTTG
AGGGATGGCCACGGGATTGACACTTCTGCTGTATGGAGTGAAATTGTGGG
TATGATTCTTAAGAGCTAGGTGTGTGTGGAGGATGTCATTCCCTCACAGC
CGGGGGCTTTTGAATTATTTGGGTTTGATGTCTTGTTGGACACGGAGCTT
CGGCCCTGGCTATTGGAGGTCAATGCCTCGCCTTCCTTGGCACGAGACCA
TACGTTGGACAAGGAGGGAAGGAAGCTTTGA

Coding sequence (CDS) from alignment at scaffold_2:428762..429792+

>mRNA_785 ID=mRNA_785|Name=jgi.p|Nanoce1779_2|636087|organism=Nannochloropsis oceanica|type=CDS|length=2928bp|location=Sequence derived from alignment at scaffold_2:428762..429792+ (Nannochloropsis oceanica)
ATGGATGCACCACCATCCAGGCCGCAAGACGAAACATGGCATATGCTCTG
GACCTGGAGCAAGCCCCGGATGGAGTCTGCGTCTCTGCTCGCCCACCAGC
AAGTAAATCATATTCCCCGCTCGCAGGATCTGACGCGCAAGGACTTCCTC
GTCCGGCACTTGGACAGGCACATGGCTTTGAGCAGCAGCAGCAGCAGCAG
CACGGGTGGTTCGCGAGCCTACACAAGCTTCGTCGCCACCTTCCGCGATG
GGTCCAGCTTTTCCTCCTCCTCCTCCTCATCTTTCTCGGACAACATTTCG
ATTATTAAACCTTTCAAGGCTTCGCGAGGACGTGGCATTAAACTGGTGAA
TGGCCTTTACACAGAGGGTTTTGCTCGTTTTTGCACGGCGCCCTTCGAGC
TCTACGACTTGAGCAATAAACTTCCACACGTCAGCAACAGTAGTGTCCAG
ACACGCAAAACCATTCGAGGTCAAGGCCCGCCTCTGCCGGGCAACCACCC
TCTCCGATCAGCACCATCTGCGGATGTGGGCGGAAGCAAGCTGCGGCTGT
CCTACCTGTGGCAGCACTTGAGGGATGGCCACGGGATTGACACTTCTGCT
CCGGGGGCTTTTGAATTATTTGGGTTTGATGTCTTGTTGGACACGGAGCT
TCGGCCCTGGCTATTGGAGGTCAATGCCTCGCCTTCCTTGGCACGAGACC
ATACGTTGGACAAGGAGGGAAGGAAGCTTTGAATGGATGCACCACCATCC
AGGCCGCAAGACGAAACATGGCATATGCTCTGGACCTGGAGCAAGCCCCG
GATGGAGTCTGCGTCTCTGCTCGCCCACCAGCAAGTAAATCATATTCCCC
GCTCGCAGGATCTGACGCGCAAGGACTTCCTCGTCCGGCACTTGGACAGG
CACATGGCTTTGAGCAGCAGCAGCAGCAGCAGCACGGGTGGTTCGCGAGC
CTACACAAGCTTCGTCGCCACCTTCCGCGATGGGTCCAGCTTTTCCTCCT
CCTCCTCCTCATCTTTCTCGGACAACATTTCGATTATTAAACCTTTCAAG
GCTTCGCGAGGACGTGGCATTAAACTGGTGAATGGCCTTTACACAGAGGG
TTTTGCTCGTTTTTGCACGGCGCCCTTCGAGCTCTACGACTTGAGCAATA
AACTTCCACACGTCAGCAACAGTAGTGTCCAGACACGCAAAACCATTCGA
GGTCAAGGCCCGCCTCTGCCGGGCAACCACCCTCTCCGATCAGCACCATC
TGCGGATGTGGGCGGAAGCAAGCTGCGGCTGTCCTACCTGTGGCAGCACT
TGAGGGATGGCCACGGGATTGACACTTCTGCTCCGGGGGCTTTTGAATTA
TTTGGGTTTGATGTCTTGTTGGACACGGAGCTTCGGCCCTGGCTATTGGA
GGTCAATGCCTCGCCTTCCTTGGCACGAGACCATACGTTGGACAAGGAGG
GAAGGAAGCTTTGAATGGATGCACCACCATCCAGGCCGCAAGACGAAACA
TGGCATATGCTCTGGACCTGGAGCAAGCCCCGGATGGAGTCTGCGTCTCT
GCTCGCCCACCAGCAAGTAAATCATATTCCCCGCTCGCAGGATCTGACGC
GCAAGGACTTCCTCGTCCGGCACTTGGACAGGCACATGGCTTTGAGCAGC
AGCAGCAGCAGCAGCACGGGTGGTTCGCGAGCCTACACAAGCTTCGTCGC
CACCTTCCGCGATGGGTCCAGCTTTTCCTCCTCCTCCTCCTCATCTTTCT
CGGACAACATTTCGATTATTAAACCTTTCAAGGCTTCGCGAGGACGTGGC
ATTAAACTGGTGAATGGCCTTTACACAGAGGGTTTTGCTCGTTTTTGCAC
GGCGCCCTTCGAGCTCTACGACTTGAGCAATAAACTTCCACACGTCAGCA
ACAGTAGTGTCCAGACACGCAAAACCATTCGAGGTCAAGGCCCGCCTCTG
CCGGGCAACCACCCTCTCCGATCAGCACCATCTGCGGATGTGGGCGGAAG
CAAGCTGCGGCTGTCCTACCTGTGGCAGCACTTGAGGGATGGCCACGGGA
TTGACACTTCTGCTCCGGGGGCTTTTGAATTATTTGGGTTTGATGTCTTG
TTGGACACGGAGCTTCGGCCCTGGCTATTGGAGGTCAATGCCTCGCCTTC
CTTGGCACGAGACCATACGTTGGACAAGGAGGGAAGGAAGCTTTGAATGG
ATGCACCACCATCCAGGCCGCAAGACGAAACATGGCATATGCTCTGGACC
TGGAGCAAGCCCCGGATGGAGTCTGCGTCTCTGCTCGCCCACCAGCAAGT
AAATCATATTCCCCGCTCGCAGGATCTGACGCGCAAGGACTTCCTCGTCC
GGCACTTGGACAGGCACATGGCTTTGAGCAGCAGCAGCAGCAGCAGCACG
GGTGGTTCGCGAGCCTACACAAGCTTCGTCGCCACCTTCCGCGATGGGTC
CAGCTTTTCCTCCTCCTCCTCCTCATCTTTCTCGGACAACATTTCGATTA
TTAAACCTTTCAAGGCTTCGCGAGGACGTGGCATTAAACTGGTGAATGGC
CTTTACACAGAGGGTTTTGCTCGTTTTTGCACGGCGCCCTTCGAGCTCTA
CGACTTGAGCAATAAACTTCCACACGTCAGCAACAGTAGTGTCCAGACAC
GCAAAACCATTCGAGGTCAAGGCCCGCCTCTGCCGGGCAACCACCCTCTC
CGATCAGCACCATCTGCGGATGTGGGCGGAAGCAAGCTGCGGCTGTCCTA
CCTGTGGCAGCACTTGAGGGATGGCCACGGGATTGACACTTCTGCTCCGG
GGGCTTTTGAATTATTTGGGTTTGATGTCTTGTTGGACACGGAGCTTCGG
CCCTGGCTATTGGAGGTCAATGCCTCGCCTTCCTTGGCACGAGACCATAC
GTTGGACAAGGAGGGAAGGAAGCTTTGA

Synonyms

Publications