jgi.p|Nanoce1779_2|170616, mRNA_7849 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|170616
Unique NamemRNA_7849
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1307
Alignment locationscaffold_21:501999..503745 +

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Properties
Property NameValue
TranscriptId170702
TrackFilteredModels2
ProteinId170616
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:501999..503745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170616gene_7849Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170616mRNA_7849-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7849CDS_7849Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7849 ID=mRNA_7849|Name=jgi.p|Nanoce1779_2|170616|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp
GGAGGGAGAGGGAGAATAGGGAAGGAGGAAGGGAAAGAGGGAGAGAAGGA
GGGAGAGAAGTCTGAAGGAAGGTCGAATTGGTTGTGTCCCTCTTTTCTTT
CTCGCGGGGGGGGGGGTAAATAATTCACTCTATCTCCTTCACATTAATCA
CTACTCTACTTATCATTATATTAATTCACTTCTTTGCTAAACAGGCGGTT
TGAGAGCGAGTCCTCCTATGTTCCTGTTCGCGTTACGCCGGGAATGAAGC
CACCGAGCCCCGCCCAAGAAGCTGCGCTTCGACAGCTCCTTCTTGCCGGA
CACCTCGACCAAGTCGCGCGCCTTGCCCCCGTAGGCACCGTCACGCAAGG
CAGCAAGCTTCAACGTCAGTGTGCCTACCTAGGGTGCACTTCGGCCTTGA
CCGAGCCTCTGTACATTCACCCGCATTCCTCGCTGTTTTCACCCGACCCG
GAACGACTACCGGAATGGGTGTGTTATCAGGAAATCACCCGTTCTGCCAA
GGGCCTCAACTACATGACCTGTATCACCGCCCTCGACCCCGATTGGCTCC
CACCTCTCGCCCTGCACACACCTCTCCTCTCCTTCCATCCCCCACTCTCC
TCCCCACCGCCCTCCTTCGACCCCTCCCGGGATGCCATTGTCTTTTATTG
CGTGCCCAAGTACGGTTGTCGGAATTGGGAGCTTCGGCCTTACCCCTTGA
CAGGGAAAGACTTGCTTCGTTTCTCTTCTTCCTCCTCTTCCTCGACCTCT
TCCCTCCTGCCTTCGACCCTAGCCCAGAAAAAGCAGGAGGAGGGCAGGGC
AGAGACGATGCGGGAAAATGAATGTCGGTGGTTTGCACGGGCCTTGCTGG
AAGGCAAGGTGCTGTCGGCATGGTCGAGCTTCTACCGTCAACCACCCACC
ACCACGAGCAGCCGCCTGCGTGACGAGGACGAGGAAGGGGAGGAGGAGCA
GCAGCAGGTGGGAAACAGCAAATCCTCTTTGCCATTATACTCCGCATTTT
TGAACGACCCCCCTGCTTTGATCACGCATAAACGTCCTGTCCGAAAGGTC
TTCGAAGTCTTGCAGCCTCTGATCGATGCCCGCGTTTCTTCGCTTGCGGC
CCTCCGAAGAGAATGGGCTCGAGACGCAACCTTCTTAAAGAGGGGAATCA
AAATGTGGGTAAGGTCCGAGCGAATGGCTGAATTTGATGCACTGTGGAAG
AAGACGCTTGTGACTGTGCCGGAGAAGTAGACAGATTGGTAGGAAAGCAT
AGGTGAATTTTGATGTGTACCTAAAAAGCAAGTTATTGAAACAAGACAGA
AATTGGG
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protein sequence of jgi.p|Nanoce1779_2|170616

>mRNA_7849-protein ID=mRNA_7849-protein|Name=jgi.p|Nanoce1779_2|170616|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MKPPSPAQEAALRQLLLAGHLDQVARLAPVGTVTQGSKLQRQCAYLGCTS
ALTEPLYIHPHSSLFSPDPERLPEWVCYQEITRSAKGLNYMTCITALDPD
WLPPLALHTPLLSFHPPLSSPPPSFDPSRDAIVFYCVPKYGCRNWELRPY
PLTGKDLLRFSSSSSSSTSSLLPSTLAQKKQEEGRAETMRENECRWFARA
LLEGKVLSAWSSFYRQPPTTTSSRLRDEDEEGEEEQQQVGNSKSSLPLYS
AFLNDPPALITHKRPVRKVFEVLQPLIDARVSSLAALRREWARDATFLKR
GIKMWVRSERMAEFDALWKKTLVTVPEK*
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mRNA from alignment at scaffold_21:501999..503745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7849 ID=mRNA_7849|Name=jgi.p|Nanoce1779_2|170616|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at scaffold_21:501999..503745+ (Nannochloropsis oceanica)
GGAGGGAGAGGGAGAATAGGGAAGGAGGAAGGGAAAGAGGGAGAGAAGGA GGGAGAGAAGTCTGAAGGAAGGTCGAATTGGTTGTGTCCCTCTTTTCTTT CTCGCGGGGGGGGGGGTAAATAATTCACTCTATCTCCTTCACATTAATCA CTACTCTACTTATCATTATATTAATTCACTTCTTTGCTAAACAGGCGGTT TGAGAGCGAGTCCTCCTATGTTCCTGTTCGCGTTACGCCGGGAATGAAGC CACCGAGCCCCGCCCAAGAAGCTGCGCTTCGACAGGTGAGAATGTGGAGA GGGAGGGAGGGAGGGAGTGGGGGAGGGTGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGAAGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGAGGGAATTTACAAAATGGAAGGAAGACCATGTCGTACAAG TGTCTGAAGAGATCTCACCTTTACTATCCTATTTTCCTCCCTCCTGCCCT CCTTTTCTATTGCCCTTGCCTTTCTGCTCTCCTTCCCTCCTTCCCTCCTT CCCTCCTTCCCGCCGTCCCTTAGCTCCTTCTTGCCGGACACCTCGACCAA GTCGCGCGCCTTGCCCCCGTAGGCACCGTCACGCAAGGCAGCAAGCTTCA ACGTCAGTGTGCCTACCTAGGGTGCACTTCGGCCTTGACCGAGCCTCTGT ACATTCACCCGCATTCCTCGCTGTTTTCACCCGACCCGGAACGACTACCG GAATGGGTGTGTTATCAGGTAAACGAGGGGGGAGGGAGGGAGAGAGGGAG GAAGGGAAGGAGGGAGGGAGGGACGAAAGAAATACAAAAGCCTTCCCCCC ATCTACTTCGGACCACCATTCACGTTTTTCCCACACTCTCCTGTCCCTCC TCCTTTCCCTCCCTTCCCAGGAAATCACCCGTTCTGCCAAGGGCCTCAAC TACATGACCTGTATCACCGCCCTCGACCCCGATTGGCTCCCACCTCTCGC CCTGCACACACCTCTCCTCTCCTTCCATCCCCCACTCTCCTCCCCACCGC CCTCCTTCGACCCCTCCCGGGATGCCATTGTCTTTTATTGCGTGCCCAAG TACGGTTGTCGGAATTGGGAGCTTCGGCCTTACCCCTTGACAGGGAAAGA CTTGCTTCGTTTCTCTTCTTCCTCCTCTTCCTCGACCTCTTCCCTCCTGC CTTCGACCCTAGCCCAGAAAAAGCAGGAGGAGGGCAGGGCAGAGACGATG CGGGAAAATGAATGTCGGTGGTTTGCACGGGCCTTGCTGGAAGGCAAGGT GCTGTCGGCATGGTCGAGCTTCTACCGTCAACCACCCACCACCACGAGCA GCCGCCTGCGTGACGAGGACGAGGAAGGGGAGGAGGAGCAGCAGCAGGTG GGAAACAGCAAATCCTCTTTGCCATTATACTCCGCATTTTTGAACGACCC CCCTGCTTTGATCACGCATAAACGTCCTGTCCGAAAGGTCTTCGAAGTCT TGCAGCCTCTGATCGATGCCCGCGTTTCTTCGCTTGCGGCCCTCCGAAGA GAATGGGCTCGAGACGCAACCTTCTTAAAGAGGGGAATCAAAATGTGGGT AAGGTCCGAGCGAATGGCTGAATTTGATGCACTGTGGAAGAAGACGCTTG TGACTGTGCCGGAGAAGTAGACAGATTGGTAGGAAAGCATAGGTGAATTT TGATGTGTACCTAAAAAGCAAGTTATTGAAACAAGACAGAAATTGGG
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Coding sequence (CDS) from alignment at scaffold_21:501999..503745+

>mRNA_7849 ID=mRNA_7849|Name=jgi.p|Nanoce1779_2|170616|organism=Nannochloropsis oceanica|type=CDS|length=2961bp|location=Sequence derived from alignment at scaffold_21:501999..503745+ (Nannochloropsis oceanica)
ATGAAGCCACCGAGCCCCGCCCAAGAAGCTGCGCTTCGACAGCTCCTTCT
TGCCGGACACCTCGACCAAGTCGCGCGCCTTGCCCCCGTAGGCACCGTCA
CGCAAGGCAGCAAGCTTCAACGTCAGTGTGCCTACCTAGGGTGCACTTCG
GCCTTGACCGAGCCTCTGTACATTCACCCGCATTCCTCGCTGTTTTCACC
CGACCCGGAACGACTACCGGAATGGGTGTGTTATCAGGAAATCACCCGTT
CTGCCAAGGGCCTCAACTACATGACCTGTATCACCGCCCTCGACCCCGAT
TGGCTCCCACCTCTCGCCCTGCACACACCTCTCCTCTCCTTCCATCCCCC
ACTCTCCTCCCCACCGCCCTCCTTCGACCCCTCCCGGGATGCCATTGTCT
TTTATTGCGTGCCCAAGTACGGTTGTCGGAATTGGGAGCTTCGGCCTTAC
CCCTTGACAGGGAAAGACTTGCTTCGTTTCTCTTCTTCCTCCTCTTCCTC
GACCTCTTCCCTCCTGCCTTCGACCCTAGCCCAGAAAAAGCAGGAGGAGG
GCAGGGCAGAGACGATGCGGGAAAATGAATGTCGGTGGTTTGCACGGGCC
TTGCTGGAAGGCAAGGTGCTGTCGGCATGGTCGAGCTTCTACCGTCAACC
ACCCACCACCACGAGCAGCCGCCTGCGTGACGAGGACGAGGAAGGGGAGG
AGGAGCAGCAGCAGGTGGGAAACAGCAAATCCTCTTTGCCATTATACTCC
GCATTTTTGAACGACCCCCCTGCTTTGATCACGCATAAACGTCCTGTCCG
AAAGGTCTTCGAAGTCTTGCAGCCTCTGATCGATGCCCGCGTTTCTTCGC
TTGCGGCCCTCCGAAGAGAATGGGCTCGAGACGCAACCTTCTTAAAGAGG
GGAATCAAAATGTGGGTAAGGTCCGAGCGAATGGCTGAATTTGATGCACT
GTGGAAGAAGACGCTTGTGACTGTGCCGGAGAAGTAGATGAAGCCACCGA
GCCCCGCCCAAGAAGCTGCGCTTCGACAGCTCCTTCTTGCCGGACACCTC
GACCAAGTCGCGCGCCTTGCCCCCGTAGGCACCGTCACGCAAGGCAGCAA
GCTTCAACGTCAGTGTGCCTACCTAGGGTGCACTTCGGCCTTGACCGAGC
CTCTGTACATTCACCCGCATTCCTCGCTGTTTTCACCCGACCCGGAACGA
CTACCGGAATGGGTGTGTTATCAGGAAATCACCCGTTCTGCCAAGGGCCT
CAACTACATGACCTGTATCACCGCCCTCGACCCCGATTGGCTCCCACCTC
TCGCCCTGCACACACCTCTCCTCTCCTTCCATCCCCCACTCTCCTCCCCA
CCGCCCTCCTTCGACCCCTCCCGGGATGCCATTGTCTTTTATTGCGTGCC
CAAGTACGGTTGTCGGAATTGGGAGCTTCGGCCTTACCCCTTGACAGGGA
AAGACTTGCTTCGTTTCTCTTCTTCCTCCTCTTCCTCGACCTCTTCCCTC
CTGCCTTCGACCCTAGCCCAGAAAAAGCAGGAGGAGGGCAGGGCAGAGAC
GATGCGGGAAAATGAATGTCGGTGGTTTGCACGGGCCTTGCTGGAAGGCA
AGGTGCTGTCGGCATGGTCGAGCTTCTACCGTCAACCACCCACCACCACG
AGCAGCCGCCTGCGTGACGAGGACGAGGAAGGGGAGGAGGAGCAGCAGCA
GGTGGGAAACAGCAAATCCTCTTTGCCATTATACTCCGCATTTTTGAACG
ACCCCCCTGCTTTGATCACGCATAAACGTCCTGTCCGAAAGGTCTTCGAA
GTCTTGCAGCCTCTGATCGATGCCCGCGTTTCTTCGCTTGCGGCCCTCCG
AAGAGAATGGGCTCGAGACGCAACCTTCTTAAAGAGGGGAATCAAAATGT
GGGTAAGGTCCGAGCGAATGGCTGAATTTGATGCACTGTGGAAGAAGACG
CTTGTGACTGTGCCGGAGAAGTAGATGAAGCCACCGAGCCCCGCCCAAGA
AGCTGCGCTTCGACAGCTCCTTCTTGCCGGACACCTCGACCAAGTCGCGC
GCCTTGCCCCCGTAGGCACCGTCACGCAAGGCAGCAAGCTTCAACGTCAG
TGTGCCTACCTAGGGTGCACTTCGGCCTTGACCGAGCCTCTGTACATTCA
CCCGCATTCCTCGCTGTTTTCACCCGACCCGGAACGACTACCGGAATGGG
TGTGTTATCAGGAAATCACCCGTTCTGCCAAGGGCCTCAACTACATGACC
TGTATCACCGCCCTCGACCCCGATTGGCTCCCACCTCTCGCCCTGCACAC
ACCTCTCCTCTCCTTCCATCCCCCACTCTCCTCCCCACCGCCCTCCTTCG
ACCCCTCCCGGGATGCCATTGTCTTTTATTGCGTGCCCAAGTACGGTTGT
CGGAATTGGGAGCTTCGGCCTTACCCCTTGACAGGGAAAGACTTGCTTCG
TTTCTCTTCTTCCTCCTCTTCCTCGACCTCTTCCCTCCTGCCTTCGACCC
TAGCCCAGAAAAAGCAGGAGGAGGGCAGGGCAGAGACGATGCGGGAAAAT
GAATGTCGGTGGTTTGCACGGGCCTTGCTGGAAGGCAAGGTGCTGTCGGC
ATGGTCGAGCTTCTACCGTCAACCACCCACCACCACGAGCAGCCGCCTGC
GTGACGAGGACGAGGAAGGGGAGGAGGAGCAGCAGCAGGTGGGAAACAGC
AAATCCTCTTTGCCATTATACTCCGCATTTTTGAACGACCCCCCTGCTTT
GATCACGCATAAACGTCCTGTCCGAAAGGTCTTCGAAGTCTTGCAGCCTC
TGATCGATGCCCGCGTTTCTTCGCTTGCGGCCCTCCGAAGAGAATGGGCT
CGAGACGCAACCTTCTTAAAGAGGGGAATCAAAATGTGGGTAAGGTCCGA
GCGAATGGCTGAATTTGATGCACTGTGGAAGAAGACGCTTGTGACTGTGC
CGGAGAAGTAG
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Synonyms
Publications