jgi.p|Nanoce1779_2|600233, mRNA_7845 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600233
Unique Name	mRNA_7845
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1208
Alignment location	scaffold_21:486986..489402 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600319
Track	FilteredModels2
ProteinId	600233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:486986..489402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600233	gene_7845	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600233	mRNA_7845-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7845	CDS_7845	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:486986..489402+
coding sequence from alignment at scaffold_21:486986..489402+

mRNA sequence

>mRNA_7845 ID=mRNA_7845|Name=jgi.p|Nanoce1779_2|600233|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
ACAGGCAGCTTGCCGCATCGCCCTCTTCTCCTGGTGGTCGTCGTCAACAC
CATCCTTTCAGCAAGCAGCAGCATCTGCAGCAGCAGCAGTAGGAAGTAGC
GGCAGCACGATTTATCCCACTCCACGCCTCGTCGCCCTCCCCATCCTCCT
TTCCCTTTTCGTTCTCCTCGTCTTCCCAATCCCCTCCCTCTCCTTCCTCC
TCCCCTCCTCTTCCTCCCTCCCCTCGACAAGGAGGAGCCCGTTCTGCGGC
ACCATTCCGCACACACGGGCAACCTCGGCCCCTCTGCGGGTCGTGCGATT
TGGCACCCAGCACCATCATCACGACTCCAGGGGCGCGTCAGACTACCGAG
GCATGCCTCTTGGCAACCCCAGCAGCACCAGCGGTGGCAGTGGTGGTGGT
GGTGGAGGCAGCAGCATGGGCAGCGGTGGTGGCGCAGGAGCCGGAAGGCG
GCGGCCGTTGGTTATTGGCATAACGGGTGGAATCGCCTCGGGCAAAAGCG
CCGTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGGCCGTCATCGACGCG
GACGTGTTAGGACACCGGAGCTACGCGAAAGGCACGAGATGCTTCCGCCT
ACTCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGAGGATGGGAATATCA
ACAGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTCCCACGGAACGGAAA
CGGCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGACTCATGGAGCAGGA
TATTCAGGCCTTGGGGGAGACCGGCATCCAGACGGCGGTGGTTGAGGCAG
CAGTAATGCTGGAGGCGGGTTGGGAGGACGCGATGGACGAGGTGTGGGTG
GTGGTTGTGGACCCGGAGGTAGCCAGAACTCGCCTCATGGCTCGGAATCA
CCTCTCAGCCGAAGACGCCAGCAGGCGGATTCAGGCGCAGATGACAAACG
AAGAGCGGATGGAGAAAGCCGACCGCGTGATATACAATAATCGAACGGCG
GCAGAGCTCGAGAAAGAGGTGGAGCTGGCATGGACGGAGCGTGGGACGCT
CCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAGGATCTTGGCGACAG
CTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAGTAAGGATGAGGAAG
GGGTAGGGAGGGAGGGAGGGAGGGAGGCAGGGAGAGAGGTGTAGATAAGG
GGGGCTGG

protein sequence of jgi.p|Nanoce1779_2|600233

>mRNA_7845-protein ID=mRNA_7845-protein|Name=jgi.p|Nanoce1779_2|600233|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MPLGNPSSTSGGSGGGGGGSSMGSGGGAGAGRRRPLVIGITGGIASGKSA
VAKLCQTHQGAAVIDADVLGHRSYAKGTRCFRLLVKTFGEGIVGEDGNIN
RRALGSIVFSSPTERKRLEGIVWPEIRRLMEQDIQALGETGIQTAVVEAA
VMLEAGWEDAMDEVWVVVVDPEVARTRLMARNHLSAEDASRRIQAQMTNE
ERMEKADRVIYNNRTAAELEKEVELAWTERGTLRRRKSALRARWRILATA
VGFALLASLVGVRMRKG*

mRNA from alignment at scaffold_21:486986..489402+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7845 ID=mRNA_7845|Name=jgi.p|Nanoce1779_2|600233|organism=Nannochloropsis oceanica|type=mRNA|length=2417bp|location=Sequence derived from alignment at scaffold_21:486986..489402+ (Nannochloropsis oceanica)
ACAGGCAGCTTGCCGCATCGCCCTCTTCTCCTGGTGGTCGTCGTCAACAC
CATCCTTTCAGCAAGCAGCAGCATCTGCAGCAGCAGCAGTAGGAAGTAGC
GGCAGCACGATTTATCCCACTCCACGCCTCGTCGCCCTCCCCATCCTCCT
TTCCCTTTTCGTTCTCCTCGTCTTCCCAATCCCCTCCCTCTCCTTCCTCC
TCCCCTCCTCTTCCTCCCTCCCCTCGACAAGGAGGAGCCCGTTCTGCGGC
ACCATTCCGCACACACGGGCAACCTCGGCCCCTCTGCGGGTCGTGCGATT
TGGCACCCAGCACCATCATCACGACTCCAGGGGCGCGTCAGGTACATGGG
CGTGTCCGCCTAGCCTCTCCCTCCCTCCCTCCCTCCTCTCATACGGTAGT
GTGGAAGGCCTCGTGGACGTCCTCACCGATCCATTTTTCTCTCCTCCCTC
CTTCCCTCCTCCTCCCTTCATTAGACTACCGAGGCATGCCTCTTGGCAAC
CCCAGCAGCACCAGCGGTGGCAGTGGTGGTGGTGGTGGAGGCAGCAGCAT
GGGCAGCGGTGGTGGCGCAGGAGCCGGAAGGCGGCGGCCGTTGGTTATTG
GCATAACGGGTGGAAGTACGTTTCAGCGGGTGGGAAGAGGAGGGGAGGGA
ATGGGAAAGGGTGCGCGAGCAACTCGTGTTATTTTTGGTGTGTGGGTGAT
TCTTTTCCTTTTCTTTTTTTCTTTTTCTTCTTTCTTTCCTTTTCGTTTCG
TTTAGTTGTGTGTTTCCATTCATTTCTTCTTCCTTTCTGTTTGTTTCCTT
CCGTCTTCTTCGGTGCGTGGATGGAGGGATGGAGTCACTTACTTGCCATC
GCCACGCTGTGTGAAGGATATCAAGGCCGAGGGAGGGAGGGAGGGACGTG
GGTAGATGTCCTCCAGGGGCTGCGTCGACGAAAAGCTCCACGACATGTCA
GAGATATCGAGGCGTTGCTGTCATCGACGCAGCCCCTGGAAGACACCCAC
CCATTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGTCGCCTCGGG
CAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGGCCGTCA
TCGACGCGGACGTGTTAGGACACCGGAGCTACGCGAAAGGCACGAGATGC
TTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGAGGATGG
GAATATCAACAGGTACGGCCTCCCTCCCTCCCTCTCTCCCTCAGGCATGC
CAGCAAGATTGCATTGTCTTCTCCTCTCCCACGGAGCGGAAACGGCTGGA
GGGAACACGTGCGATCCACTCATCCTCCCTCCTTCCCTCCCTCACCTTTT
CCCTCCCACAGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTCCCACGGA
ACGGAAACGGCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGACTCATGG
AGCAGGATATTCAGGCCTTGGGGGAGGTACCGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGAGGGAGGACGAACAGT
GCTGTCGACTGCGTAATTAACCTTTTCTCAGGCTTTCCTATTTGTATCAG
TTACATTGACCTCGCTATCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CTTTCCCCCCTCCCTCCCTCCCCCCTTTCCCCCCTCCCTCGTCAAGACCG
GCATCCAGACGGCGGTGGTTGAGGCAGCAGTAATGCTGGAGGCGGGTTGG
GAGGACGCGATGGACGAGGTGTGGGTGGTGGTTGTGGACCCGGAGGTAGC
CAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGGGGAAAGAAAGGTTAATCAACAACAGGTACAAAGATAATG
GACACGCACCCCCCTCCCCTCCCTCCCTCCCTCCTTCCCTCAGAACTCGC
CTCATGGCTCGGAATCACCTCTCAGCCGAAGACGCCAGCAGGCGGATTCA
GGCGCAGATGACAAACGAAGAGCGGATGGAGAAAGCCGACCGCGTGATAT
ACAATAATCGAACGGCGGCAGAGCTCGAGAAAGAGGTAGGGACGTGCCCG
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGGCCCCTTGCCTACCTT
CCAGGGATGAGGCGACGAATCCAGACACTGTTCCTTCAACTCCCTCCCCC
CCGCCCTTCCTCCCTCCCTCCCTTCAGGTGGAGCTGGCATGGACGGAGCG
TGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAGGATCT
TGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAGTAAGG
ATGAGGAAGGGGTAGGGAGGGAGGGAGGGAGGGAGGCAGGGAGAGAGGTG
TAGATAAGGGGGGCTGG

Coding sequence (CDS) from alignment at scaffold_21:486986..489402+

>mRNA_7845 ID=mRNA_7845|Name=jgi.p|Nanoce1779_2|600233|organism=Nannochloropsis oceanica|type=CDS|length=4824bp|location=Sequence derived from alignment at scaffold_21:486986..489402+ (Nannochloropsis oceanica)
ATGCCTCTTGGCAACCCCAGCAGCACCAGCGGTGGCAGTGGTGGTGGTGG
TGGAGGCAGCAGCATGGGCAGCGGTGGTGGCGCAGGAGCCGGAAGGCGGC
GGCCGTTGGTTATTGGCATAACGGGTGGAATCGCCTCGGGCAAAAGCGCC
GTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGGCCGTCATCGACGCGGA
CGTGTTAGGACACCGGAGCTACGCGAAAGGCACGAGATGCTTCCGCCTAC
TCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGAGGATGGGAATATCAAC
AGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTCCCACGGAACGGAAACG
GCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGACTCATGGAGCAGGATA
TTCAGGCCTTGGGGGAGACCGGCATCCAGACGGCGGTGGTTGAGGCAGCA
GTAATGCTGGAGGCGGGTTGGGAGGACGCGATGGACGAGGTGTGGGTGGT
GGTTGTGGACCCGGAGGTAGCCAGAACTCGCCTCATGGCTCGGAATCACC
TCTCAGCCGAAGACGCCAGCAGGCGGATTCAGGCGCAGATGACAAACGAA
GAGCGGATGGAGAAAGCCGACCGCGTGATATACAATAATCGAACGGCGGC
AGAGCTCGAGAAAGAGGTGGAGCTGGCATGGACGGAGCGTGGGACGCTCC
GTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAGGATCTTGGCGACAGCT
GTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAGTAAGGATGAGGAAGGG
GTAGATGCCTCTTGGCAACCCCAGCAGCACCAGCGGTGGCAGTGGTGGTG
GTGGTGGAGGCAGCAGCATGGGCAGCGGTGGTGGCGCAGGAGCCGGAAGG
CGGCGGCCGTTGGTTATTGGCATAACGGGTGGAATCGCCTCGGGCAAAAG
CGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGGCCGTCATCGACG
CGGACGTGTTAGGACACCGGAGCTACGCGAAAGGCACGAGATGCTTCCGC
CTACTCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGAGGATGGGAATAT
CAACAGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTCCCACGGAACGGA
AACGGCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGACTCATGGAGCAG
GATATTCAGGCCTTGGGGGAGACCGGCATCCAGACGGCGGTGGTTGAGGC
AGCAGTAATGCTGGAGGCGGGTTGGGAGGACGCGATGGACGAGGTGTGGG
TGGTGGTTGTGGACCCGGAGGTAGCCAGAACTCGCCTCATGGCTCGGAAT
CACCTCTCAGCCGAAGACGCCAGCAGGCGGATTCAGGCGCAGATGACAAA
CGAAGAGCGGATGGAGAAAGCCGACCGCGTGATATACAATAATCGAACGG
CGGCAGAGCTCGAGAAAGAGGTGGAGCTGGCATGGACGGAGCGTGGGACG
CTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAGGATCTTGGCGAC
AGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAGTAAGGATGAGGA
AGGGGTAGATGCCTCTTGGCAACCCCAGCAGCACCAGCGGTGGCAGTGGT
GGTGGTGGTGGAGGCAGCAGCATGGGCAGCGGTGGTGGCGCAGGAGCCGG
AAGGCGGCGGCCGTTGGTTATTGGCATAACGGGTGGAATCGCCTCGGGCA
AAAGCGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGGCCGTCATC
GACGCGGACGTGTTAGGACACCGGAGCTACGCGAAAGGCACGAGATGCTT
CCGCCTACTCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGAGGATGGGA
ATATCAACAGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTCCCACGGAA
CGGAAACGGCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGACTCATGGA
GCAGGATATTCAGGCCTTGGGGGAGACCGGCATCCAGACGGCGGTGGTTG
AGGCAGCAGTAATGCTGGAGGCGGGTTGGGAGGACGCGATGGACGAGGTG
TGGGTGGTGGTTGTGGACCCGGAGGTAGCCAGAACTCGCCTCATGGCTCG
GAATCACCTCTCAGCCGAAGACGCCAGCAGGCGGATTCAGGCGCAGATGA
CAAACGAAGAGCGGATGGAGAAAGCCGACCGCGTGATATACAATAATCGA
ACGGCGGCAGAGCTCGAGAAAGAGGTGGAGCTGGCATGGACGGAGCGTGG
GACGCTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAGGATCTTGG
CGACAGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAGTAAGGATG
AGGAAGGGGTAGATGCCTCTTGGCAACCCCAGCAGCACCAGCGGTGGCAG
TGGTGGTGGTGGTGGAGGCAGCAGCATGGGCAGCGGTGGTGGCGCAGGAG
CCGGAAGGCGGCGGCCGTTGGTTATTGGCATAACGGGTGGAATCGCCTCG
GGCAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGGCCGT
CATCGACGCGGACGTGTTAGGACACCGGAGCTACGCGAAAGGCACGAGAT
GCTTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGAGGAT
GGGAATATCAACAGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTCCCAC
GGAACGGAAACGGCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGACTCA
TGGAGCAGGATATTCAGGCCTTGGGGGAGACCGGCATCCAGACGGCGGTG
GTTGAGGCAGCAGTAATGCTGGAGGCGGGTTGGGAGGACGCGATGGACGA
GGTGTGGGTGGTGGTTGTGGACCCGGAGGTAGCCAGAACTCGCCTCATGG
CTCGGAATCACCTCTCAGCCGAAGACGCCAGCAGGCGGATTCAGGCGCAG
ATGACAAACGAAGAGCGGATGGAGAAAGCCGACCGCGTGATATACAATAA
TCGAACGGCGGCAGAGCTCGAGAAAGAGGTGGAGCTGGCATGGACGGAGC
GTGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAGGATC
TTGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAGTAAG
GATGAGGAAGGGGTAGATGCCTCTTGGCAACCCCAGCAGCACCAGCGGTG
GCAGTGGTGGTGGTGGTGGAGGCAGCAGCATGGGCAGCGGTGGTGGCGCA
GGAGCCGGAAGGCGGCGGCCGTTGGTTATTGGCATAACGGGTGGAATCGC
CTCGGGCAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGCGCGG
CCGTCATCGACGCGGACGTGTTAGGACACCGGAGCTACGCGAAAGGCACG
AGATGCTTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCATCGTGGGGGA
GGATGGGAATATCAACAGACGCGCCTTAGGCAGCATTGTCTTTTCCTCTC
CCACGGAACGGAAACGGCTGGAGGGAATCGTTTGGCCGGAGATTCGGAGA
CTCATGGAGCAGGATATTCAGGCCTTGGGGGAGACCGGCATCCAGACGGC
GGTGGTTGAGGCAGCAGTAATGCTGGAGGCGGGTTGGGAGGACGCGATGG
ACGAGGTGTGGGTGGTGGTTGTGGACCCGGAGGTAGCCAGAACTCGCCTC
ATGGCTCGGAATCACCTCTCAGCCGAAGACGCCAGCAGGCGGATTCAGGC
GCAGATGACAAACGAAGAGCGGATGGAGAAAGCCGACCGCGTGATATACA
ATAATCGAACGGCGGCAGAGCTCGAGAAAGAGGTGGAGCTGGCATGGACG
GAGCGTGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTTGGAG
GATCTTGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTGGGAG
TAAGGATGAGGAAGGGGTAGATGCCTCTTGGCAACCCCAGCAGCACCAGC
GGTGGCAGTGGTGGTGGTGGTGGAGGCAGCAGCATGGGCAGCGGTGGTGG
CGCAGGAGCCGGAAGGCGGCGGCCGTTGGTTATTGGCATAACGGGTGGAA
TCGCCTCGGGCAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGC
GCGGCCGTCATCGACGCGGACGTGTTAGGACACCGGAGCTACGCGAAAGG
CACGAGATGCTTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCATCGTGG
GGGAGGATGGGAATATCAACAGACGCGCCTTAGGCAGCATTGTCTTTTCC
TCTCCCACGGAACGGAAACGGCTGGAGGGAATCGTTTGGCCGGAGATTCG
GAGACTCATGGAGCAGGATATTCAGGCCTTGGGGGAGACCGGCATCCAGA
CGGCGGTGGTTGAGGCAGCAGTAATGCTGGAGGCGGGTTGGGAGGACGCG
ATGGACGAGGTGTGGGTGGTGGTTGTGGACCCGGAGGTAGCCAGAACTCG
CCTCATGGCTCGGAATCACCTCTCAGCCGAAGACGCCAGCAGGCGGATTC
AGGCGCAGATGACAAACGAAGAGCGGATGGAGAAAGCCGACCGCGTGATA
TACAATAATCGAACGGCGGCAGAGCTCGAGAAAGAGGTGGAGCTGGCATG
GACGGAGCGTGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTT
GGAGGATCTTGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTG
GGAGTAAGGATGAGGAAGGGGTAG

Synonyms

Publications