jgi.p|Nanoce1779_2|170548, mRNA_7844 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|170548
Unique NamemRNA_7844
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length613
Alignment locationscaffold_21:486717..487462 +

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Properties
Property NameValue
TranscriptId170634
TrackFilteredModels2
ProteinId170548
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:486717..487462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170548gene_7844Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170548mRNA_7844-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7844CDS_7844Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7844 ID=mRNA_7844|Name=jgi.p|Nanoce1779_2|170548|organism=Nannochloropsis oceanica|type=mRNA|length=613bp
TGTGAAGTGTGGTTGACATGCATGAAAGAGAGGACAGGTAGTGGTTTACA
CATCCCAAGATGTACCCTTTCCGGTGTCATTGGCGCTATCAGGCACTATT
ACTGCGCTTGTATACGACGGGTTTATACTTAACCACCTGGTCTTCCACTG
AAAGATTGTGGAATCTTGGTTCACTACCGCCGATGATGGTGGCTCGCTTT
TTGCTACATACAGTGCTAGGACTTTACAGTGGTTTGACTTTTCCTCCCCT
CCTCAACACCAATCAATGGACAGGCAGCTTGCCGCATCGCCCTCTTCTCC
TGGTGGTCGTCGTCAACACCATCCTTTCAGCAAGCAGCAGCATCTGCAGC
AGCAGCAGTAGGAAGTAGCGGCAGCACGATTTATCCCACTCCACGCCTCG
TCGCCCTCCCCATCCTCCTTTCCCTTTTCGTTCTCCTCGTCTTCCCAATC
CCCTCCCTCTCCTTCCTCCTCCCCTCCTCTTCCTCCCTCCCCTCGACAAG
GAGGAGCCCGTTCTGCGGCACCATTCCGCACACACGGGCAACCTCGGCCC
CTCTGCGGGTCGTGCGATTTGGCACCCAGCACCATCATCACGACTCCAGG
GGCGCGTCAGACT
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protein sequence of jgi.p|Nanoce1779_2|170548

>mRNA_7844-protein ID=mRNA_7844-protein|Name=jgi.p|Nanoce1779_2|170548|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MYPFRCHWRYQALLLRLYTTGLYLTTWSSTERLWNLGSLPPMMVARFLLH
TVLGLYSGLTFPPLLNTNQWTGSLPHRPLLLVVVVNTILSASSSICSSSS
RK*
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mRNA from alignment at scaffold_21:486717..487462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7844 ID=mRNA_7844|Name=jgi.p|Nanoce1779_2|170548|organism=Nannochloropsis oceanica|type=mRNA|length=746bp|location=Sequence derived from alignment at scaffold_21:486717..487462+ (Nannochloropsis oceanica)
TGTGAAGTGTGGTTGACATGCATGAAAGAGAGGACAGGTAGTGGTTTACA
CATCCCAAGATGTACCCTTTCCGGTGTCATTGGCGCTATCAGGCACTATT
ACTGCGCTTGTATACGACGGGTTTATACTTAACCACCTGGTCTTCCACTG
AAAGATTGTGGAATCTTGGTTCACTACCGCCGATGATGGTGGCTCGCTTT
TTGCTACATACAGTGCTAGGACTTTACAGTGGTTTGACTTTTCCTCCCCT
CCTCAACACCAATCAATGGACAGGCAGCTTGCCGCATCGCCCTCTTCTCC
TGGTGGTCGTCGTCAACACCATCCTTTCAGCAAGCAGCAGCATCTGCAGC
AGCAGCAGTAGGAAGTAGCGGCAGCACGATTTATCCCACTCCACGCCTCG
TCGCCCTCCCCATCCTCCTTTCCCTTTTCGTTCTCCTCGTCTTCCCAATC
CCCTCCCTCTCCTTCCTCCTCCCCTCCTCTTCCTCCCTCCCCTCGACAAG
GAGGAGCCCGTTCTGCGGCACCATTCCGCACACACGGGCAACCTCGGCCC
CTCTGCGGGTCGTGCGATTTGGCACCCAGCACCATCATCACGACTCCAGG
GGCGCGTCAGGTACATGGGCGTGTCCGCCTAGCCTCTCCCTCCCTCCCTC
CCTCCTCTCATACGGTAGTGTGGAAGGCCTCGTGGACGTCCTCACCGATC
CATTTTTCTCTCCTCCCTCCTTCCCTCCTCCTCCCTTCATTAGACT
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Coding sequence (CDS) from alignment at scaffold_21:486717..487462+

>mRNA_7844 ID=mRNA_7844|Name=jgi.p|Nanoce1779_2|170548|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_21:486717..487462+ (Nannochloropsis oceanica)
ATGTACCCTTTCCGGTGTCATTGGCGCTATCAGGCACTATTACTGCGCTT
GTATACGACGGGTTTATACTTAACCACCTGGTCTTCCACTGAAAGATTGT
GGAATCTTGGTTCACTACCGCCGATGATGGTGGCTCGCTTTTTGCTACAT
ACAGTGCTAGGACTTTACAGTGGTTTGACTTTTCCTCCCCTCCTCAACAC
CAATCAATGGACAGGCAGCTTGCCGCATCGCCCTCTTCTCCTGGTGGTCG
TCGTCAACACCATCCTTTCAGCAAGCAGCAGCATCTGCAGCAGCAGCAGT
AGGAAGTAG
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Synonyms
Publications