|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 170620 |
| Track | FilteredModels2 |
| ProteinId | 170534 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:483988..486365 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7843 ID=mRNA_7843|Name=jgi.p|Nanoce1779_2|170534|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
CACACTTAAATTATCCTTCTACCCTCATCATTGCGATGCGATAGCACGTG
GCACTCCTACGGGAGGCTTCGTCTGTCTGTCTTTTCATAGGAGTGGTCAA
GCAATCACGATTTCAGTCGATCGCCCTCTGCCTGGTAATTACGAGCAGTT
CCGGCGGCGACGGACAGCAAAAAGGCCTGCAAGCCCCACCTGCTTACTCA
GCCCGAATGACGGGGCGCGACCAAACGATACGACAGGACTTCGTAGAGGG
GGATGCCTCGGAGGAGTGGCGGTCGAAATTGCAGGGCGGCGCGATAGTAG
AAATTCAGGTGGACGGTGTGTGGCGCCACGGAAGGGTATCAATGCGGTAC
GATAGGAGGTGGTTCAATGCCATTGTCTATATTGTAGACACGTTGGCAAG
ACGGCTACTGATCTCTTACTTAGGCTGGCCCAAAGCCCCCCCCAACCAAC
GCTATGGTAACTTAGCCGAAGAATGGATTTCCTTTGATAGCCTCCGTCTC
CGCCGCCTTCCCCCACATTCCTCCTCATCCTCCTGCTCCTCCTCCTCTTC
ATCCTCCTCCGCTTCCTGCTCCTCCACCTCCTTCCTAACGACCTGGACTG
TCGGGGAACGAGTCCAAGTGCTCATAGATCAGCGCGAGCATGAGTATAGG
TGGGGCTATTGGCGATTTCATGGGGGTTACGCTCGAGGGGTAAAGGGAGA
GGAAGATATCTCCCCCTCGTCTGACGCGGCAACGTTACTTATCGAAGTTT
TGCCCTGGCCCTCGGAGGAGGAGGGCGGGGAGGGCGGGGAAGAAGGGAGG
AAAGAAGGGAGGAAGGAAGGGGTGGTGGCGGCATTGTTGAAAGGAAGCGC
AGGGGAGTGGTCCTCCACAGCAGCAACAGCGGGCACCGAGGGCAGTAGCA
GCAGTACTAGCAGCAGTTGCAGTGGCATCAGCCCAGGGAAGGGTGCTTTT
GCCCCTCTTCCTCCAAAATCATCACCCTCACAATCGGCATTCCAAAACGC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCACCACCTGTC
CCTCCTTCCTCCATGCCGCAACACTCCTGTCCCGCTCCTCCCCTCTTCGA
CCCATTCCACTCACAAGCAACATCATCATCGACGGCAGCGCCAGCCCTAC
CAAGCTATCGCCATCCTCCTCCCCCTCTTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATCCTCC
TCCTCCCTCTCTCCAGCCCTCTCTCCCGCCCTCTCTCCATCCTCTTCCTA
TTCCTCAAGCGCACCTACTTTTATTTGCATTCATCTTTGGAGTAGATCTC
TCGCCGCGGGAGGGACACACATGCTCCCTTATCCTGCTCCCTCTCTCCCT
CCCTTCCCTCCTACATTTTATTACAGCAACTCCTCCCTCACCAGCGCACC
TACCTCTTCCTCCTCCACATCGTCCCTCCCCCTCCCTCCATTGCTGTCTC
CTATGTCCAGCAGTGAATCAACTCACTTCTCCTCCTCCGGCGCCGGTGGT
CCGTCCTCCCCTCCCTCCCTCCCGTCCTCCCCTCCTCCACCACACGCCCA
CGTGCCCTTGATGACTGTGGGCTGAACCCAATAGCGCGCTGGTCGTGCGT
CGAAAGAGGGAGGGACGAAGGGAGGGAGGGAGGGACTCTACGCCACTTAA
TCCCTGTGGTTTCGCAAAGGATTTGGGAAGTGTTTGGAAGAGAAGGAGCG
AGGTAGCG back to topprotein sequence of jgi.p|Nanoce1779_2|170534 >mRNA_7843-protein ID=mRNA_7843-protein|Name=jgi.p|Nanoce1779_2|170534|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MTGRDQTIRQDFVEGDASEEWRSKLQGGAIVEIQVDGVWRHGRVSMRYDR
RWFNAIVYIVDTLARRLLISYLGWPKAPPNQRYGNLAEEWISFDSLRLRR
LPPHSSSSSCSSSSSSSSASCSSTSFLTTWTVGERVQVLIDQREHEYRWG
YWRFHGGYARGVKGEEDISPSSDAATLLIEVLPWPSEEEGGEGGEEGRKE
GRKEGVVAALLKGSAGEWSSTAATAGTEGSSSSTSSSCSGISPGKGAFAP
LPPKSSPSQSAFQNASSSSSSSSSSSTTTTCPSFLHAATLLSRSSPLRPI
PLTSNIIIDGSASPTKLSPSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSS
LSPALSPALSPSSSYSSSAPTFICIHLWSRSLAAGGTHMLPYPAPSLPPF
PPTFYYSNSSLTSAPTSSSSTSSLPLPPLLSPMSSSESTHFSSSGAGGPS
SPPSLPSSPPPPHAHVPLMTVG* back to topmRNA from alignment at scaffold_21:483988..486365- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7843 ID=mRNA_7843|Name=jgi.p|Nanoce1779_2|170534|organism=Nannochloropsis oceanica|type=mRNA|length=2378bp|location=Sequence derived from alignment at scaffold_21:483988..486365- (Nannochloropsis oceanica)
CACACTTAAATTATCCTTCTACCCTCATCATTGCGATGCGATAGCACGTG
GCACTCCTACGGGAGGCTTCGTCTGTCTGTCTTTTCATAGGAGTGGTCAA
GCAATCACGATTTCAGTCGATCGCCCTCTGCCTGGTAATTACGAGCAGTT
CCGGCGGCGACGGACAGCAAAAAGGCCTGCAAGCCCCACCTGCTTACTCA
GCCCGAATGACGGGGCGCGACCAAACGATACGACAGGACTTCGTAGAGGG
GGATGCCTCGGAGGAGTGGCGGTCGAAATTGCAGGGCGGCGCGATAGTAG
AAATTCAGGTAAAAAGATGAAGGGGGGGGAGGGGGTGGGAGGAAGTGACG
GAAATCGTGCGACGTGGTGGCTCCAGGGTTGCTACTTTTGCTCAACCACC
CTCCTGGTCATATTTGTGAATGCCTACATGATAATTTAGCCAAGGGAAGG
GACTTGTAGAGGGAGGAGGACATGTGGGAGGGAGGAATCGGACTTATGGC
GTCATTATATATGGCATCATGCACTCACTACTGCCAACCCCCAACCCCCA
TAAATAAACTCCACGCCCACAGGTGGACGGTGTGTGGCGCCACGGAAGGG
TATCAATGCGGTACGATAGGAGGTGGTTCAATGCCATTGTCTATATTGTA
GACACGTTGGCAAGACGGCTACTGATCTCTTACTTAGGTACGTGTGATGG
CAGGGAGGGAGGGGAGGTCCTACAGAGGGAGTTACGTCGAGTTGGGATTG
CAGAAATGCAGAGAGAGAAAGGGGGGCTGAGGGCCATGGCGGAAAGGGAT
ATGGAAGACAGAGGCTTCTGGTAGGGGTACATGGGGAGGGGTGGGAGTAA
GACGTACACACTCGCGCTGTCCAGACGCATGCACGCTCATCGAAGAACCC
ATCAAGAAAGCTAGTTACCGTCACCGAGAGACAGTTCGGAAAACATTCAG
GCACACTCAGCCCCCCCCCCTCCCCCCCCCCCCCCTACTCTCTCTCCCCT
CCCTCTTTCTCTTTCCCTCTCACCCTTCCTTCCGCCCTTGCAGGCTGGCC
CAAAGCCCCCCCCAACCAACGCTATGGTAACTTAGCCGAAGAATGGATTT
CCTTTGATAGCCTCCGTCTCCGCCGCCTTCCCCCACATTCCTCCTCATCC
TCCTGCTCCTCCTCCTCTTCATCCTCCTCCGCTTCCTGCTCCTCCACCTC
CTTCCTAACGACCTGGACTGTCGGGGAACGAGTCCAAGTGCTCATAGATC
AGCGCGAGCATGAGTATAGGTGGGGCTATTGGCGATTTCATGGGGGTTAC
GCTCGAGGGGTAAAGGGAGAGGAAGATATCTCCCCCTCGTCTGACGCGGC
AACGTTACTTATCGAAGTTTTGCCCTGGCCCTCGGAGGAGGAGGGCGGGG
AGGGCGGGGAAGAAGGGAGGAAAGAAGGGAGGAAGGAAGGGGTGGTGGCG
GCATTGTTGAAAGGAAGCGCAGGGGAGTGGTCCTCCACAGCAGCAACAGC
GGGCACCGAGGGCAGTAGCAGCAGTACTAGCAGCAGTTGCAGTGGCATCA
GCCCAGGGAAGGGTGCTTTTGCCCCTCTTCCTCCAAAATCATCACCCTCA
CAATCGGCATTCCAAAACGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCACCACCACCACCTGTCCCTCCTTCCTCCATGCCGCAACACTCCTGT
CCCGCTCCTCCCCTCTTCGACCCATTCCACTCACAAGCAACATCATCATC
GACGGCAGCGCCAGCCCTACCAAGCTATCGCCATCCTCCTCCCCCTCTTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCGTCATCCTCCTCCTCCCTCTCTCCAGCCCTCTCTCCCGCC
CTCTCTCCATCCTCTTCCTATTCCTCAAGCGCACCTACTTTTATTTGCAT
TCATCTTTGGAGTAGATCTCTCGCCGCGGGAGGGACACACATGCTCCCTT
ATCCTGCTCCCTCTCTCCCTCCCTTCCCTCCTACATTTTATTACAGCAAC
TCCTCCCTCACCAGCGCACCTACCTCTTCCTCCTCCACATCGTCCCTCCC
CCTCCCTCCATTGCTGTCTCCTATGTCCAGCAGTGAATCAACTCACTTCT
CCTCCTCCGGCGCCGGTGGTCCGTCCTCCCCTCCCTCCCTCCCGTCCTCC
CCTCCTCCACCACACGCCCACGTGCCCTTGATGACTGTGGGCTGAACCCA
ATAGCGCGCTGGTCGTGCGTCGAAAGAGGGAGGGACGAAGGGAGGGAGGG
AGGGACTCTACGCCACTTAATCCCTGTGGTTTCGCAAAGGATTTGGGAAG
TGTTTGGAAGAGAAGGAGCGAGGTAGCG back to topCoding sequence (CDS) from alignment at scaffold_21:483988..486365- >mRNA_7843 ID=mRNA_7843|Name=jgi.p|Nanoce1779_2|170534|organism=Nannochloropsis oceanica|type=CDS|length=4257bp|location=Sequence derived from alignment at scaffold_21:483988..486365- (Nannochloropsis oceanica)
GCTGGCCCAAAGCCCCCCCCAACCAACGCTATGGTAACTTAGCCGAAGAA
TGGATTTCCTTTGATAGCCTCCGTCTCCGCCGCCTTCCCCCACATTCCTC
CTCATCCTCCTGCTCCTCCTCCTCTTCATCCTCCTCCGCTTCCTGCTCCT
CCACCTCCTTCCTAACGACCTGGACTGTCGGGGAACGAGTCCAAGTGCTC
ATAGATCAGCGCGAGCATGAGTATAGGTGGGGCTATTGGCGATTTCATGG
GGGTTACGCTCGAGGGGTAAAGGGAGAGGAAGATATCTCCCCCTCGTCTG
ACGCGGCAACGTTACTTATCGAAGTTTTGCCCTGGCCCTCGGAGGAGGAG
GGCGGGGAGGGCGGGGAAGAAGGGAGGAAAGAAGGGAGGAAGGAAGGGGT
GGTGGCGGCATTGTTGAAAGGAAGCGCAGGGGAGTGGTCCTCCACAGCAG
CAACAGCGGGCACCGAGGGCAGTAGCAGCAGTACTAGCAGCAGTTGCAGT
GGCATCAGCCCAGGGAAGGGTGCTTTTGCCCCTCTTCCTCCAAAATCATC
ACCCTCACAATCGGCATTCCAAAACGCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCACCACCACCACCTGTCCCTCCTTCCTCCATGCCGCAACA
CTCCTGTCCCGCTCCTCCCCTCTTCGACCCATTCCACTCACAAGCAACAT
CATCATCGACGGCAGCGCCAGCCCTACCAAGCTATCGCCATCCTCCTCCC
CCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCGTCATCCTCCTCCTCCCTCTCTCCAGCCCTCTC
TCCCGCCCTCTCTCCATCCTCTTCCTATTCCTCAAGCGCACCTACTTTTA
TTTGCATTCATCTTTGGAGTAGATCTCTCGCCGCGGGAGGGACACACATG
CTCCCTTATCCTGCTCCCTCTCTCCCTCCCTTCCCTCCTACATTTTATTA
CAGCAACTCCTCCCTCACCAGCGCACCTACCTCTTCCTCCTCCACATCGT
CCCTCCCCCTCCCTCCATTGCTGTCTCCTATGTCCAGCAGTGAATCAACT
CACTTCTCCTCCTCCGGCGCCGGTGGTCCGTCCTCCCCTCCCTCCCTCCC
GTCCTCCCCTCCTCCACCACACGCCCACGTGCCCTTGATGACTGTGGGCT
GAGTGGACGGTGTGTGGCGCCACGGAAGGGTATCAATGCGGTACGATAGG
AGGTGGTTCAATGCCATTGTCTATATTGTAGACACGTTGGCAAGACGGCT
ACTGATCTCTTACTTAGATGACGGGGCGCGACCAAACGATACGACAGGAC
TTCGTAGAGGGGGATGCCTCGGAGGAGTGGCGGTCGAAATTGCAGGGCGG
CGCGATAGTAGAAATTCAGGCTGGCCCAAAGCCCCCCCCAACCAACGCTA
TGGTAACTTAGCCGAAGAATGGATTTCCTTTGATAGCCTCCGTCTCCGCC
GCCTTCCCCCACATTCCTCCTCATCCTCCTGCTCCTCCTCCTCTTCATCC
TCCTCCGCTTCCTGCTCCTCCACCTCCTTCCTAACGACCTGGACTGTCGG
GGAACGAGTCCAAGTGCTCATAGATCAGCGCGAGCATGAGTATAGGTGGG
GCTATTGGCGATTTCATGGGGGTTACGCTCGAGGGGTAAAGGGAGAGGAA
GATATCTCCCCCTCGTCTGACGCGGCAACGTTACTTATCGAAGTTTTGCC
CTGGCCCTCGGAGGAGGAGGGCGGGGAGGGCGGGGAAGAAGGGAGGAAAG
AAGGGAGGAAGGAAGGGGTGGTGGCGGCATTGTTGAAAGGAAGCGCAGGG
GAGTGGTCCTCCACAGCAGCAACAGCGGGCACCGAGGGCAGTAGCAGCAG
TACTAGCAGCAGTTGCAGTGGCATCAGCCCAGGGAAGGGTGCTTTTGCCC
CTCTTCCTCCAAAATCATCACCCTCACAATCGGCATTCCAAAACGCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCACCACCTGTCCCTC
CTTCCTCCATGCCGCAACACTCCTGTCCCGCTCCTCCCCTCTTCGACCCA
TTCCACTCACAAGCAACATCATCATCGACGGCAGCGCCAGCCCTACCAAG
CTATCGCCATCCTCCTCCCCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATCCTCCTCCT
CCCTCTCTCCAGCCCTCTCTCCCGCCCTCTCTCCATCCTCTTCCTATTCC
TCAAGCGCACCTACTTTTATTTGCATTCATCTTTGGAGTAGATCTCTCGC
CGCGGGAGGGACACACATGCTCCCTTATCCTGCTCCCTCTCTCCCTCCCT
TCCCTCCTACATTTTATTACAGCAACTCCTCCCTCACCAGCGCACCTACC
TCTTCCTCCTCCACATCGTCCCTCCCCCTCCCTCCATTGCTGTCTCCTAT
GTCCAGCAGTGAATCAACTCACTTCTCCTCCTCCGGCGCCGGTGGTCCGT
CCTCCCCTCCCTCCCTCCCGTCCTCCCCTCCTCCACCACACGCCCACGTG
CCCTTGATGACTGTGGGCTGAGTGGACGGTGTGTGGCGCCACGGAAGGGT
ATCAATGCGGTACGATAGGAGGTGGTTCAATGCCATTGTCTATATTGTAG
ACACGTTGGCAAGACGGCTACTGATCTCTTACTTAGATGACGGGGCGCGA
CCAAACGATACGACAGGACTTCGTAGAGGGGGATGCCTCGGAGGAGTGGC
GGTCGAAATTGCAGGGCGGCGCGATAGTAGAAATTCAGGCTGGCCCAAAG
CCCCCCCCAACCAACGCTATGGTAACTTAGCCGAAGAATGGATTTCCTTT
GATAGCCTCCGTCTCCGCCGCCTTCCCCCACATTCCTCCTCATCCTCCTG
CTCCTCCTCCTCTTCATCCTCCTCCGCTTCCTGCTCCTCCACCTCCTTCC
TAACGACCTGGACTGTCGGGGAACGAGTCCAAGTGCTCATAGATCAGCGC
GAGCATGAGTATAGGTGGGGCTATTGGCGATTTCATGGGGGTTACGCTCG
AGGGGTAAAGGGAGAGGAAGATATCTCCCCCTCGTCTGACGCGGCAACGT
TACTTATCGAAGTTTTGCCCTGGCCCTCGGAGGAGGAGGGCGGGGAGGGC
GGGGAAGAAGGGAGGAAAGAAGGGAGGAAGGAAGGGGTGGTGGCGGCATT
GTTGAAAGGAAGCGCAGGGGAGTGGTCCTCCACAGCAGCAACAGCGGGCA
CCGAGGGCAGTAGCAGCAGTACTAGCAGCAGTTGCAGTGGCATCAGCCCA
GGGAAGGGTGCTTTTGCCCCTCTTCCTCCAAAATCATCACCCTCACAATC
GGCATTCCAAAACGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCA
CCACCACCACCTGTCCCTCCTTCCTCCATGCCGCAACACTCCTGTCCCGC
TCCTCCCCTCTTCGACCCATTCCACTCACAAGCAACATCATCATCGACGG
CAGCGCCAGCCCTACCAAGCTATCGCCATCCTCCTCCCCCTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCGTCATCCTCCTCCTCCCTCTCTCCAGCCCTCTCTCCCGCCCTCTC
TCCATCCTCTTCCTATTCCTCAAGCGCACCTACTTTTATTTGCATTCATC
TTTGGAGTAGATCTCTCGCCGCGGGAGGGACACACATGCTCCCTTATCCT
GCTCCCTCTCTCCCTCCCTTCCCTCCTACATTTTATTACAGCAACTCCTC
CCTCACCAGCGCACCTACCTCTTCCTCCTCCACATCGTCCCTCCCCCTCC
CTCCATTGCTGTCTCCTATGTCCAGCAGTGAATCAACTCACTTCTCCTCC
TCCGGCGCCGGTGGTCCGTCCTCCCCTCCCTCCCTCCCGTCCTCCCCTCC
TCCACCACACGCCCACGTGCCCTTGATGACTGTGGGCTGAGTGGACGGTG
TGTGGCGCCACGGAAGGGTATCAATGCGGTACGATAGGAGGTGGTTCAAT
GCCATTGTCTATATTGTAGACACGTTGGCAAGACGGCTACTGATCTCTTA
CTTAGATGACGGGGCGCGACCAAACGATACGACAGGACTTCGTAGAGGGG
GATGCCTCGGAGGAGTGGCGGTCGAAATTGCAGGGCGGCGCGATAGTAGA
AATTCAG back to top
|