jgi.p|Nanoce1779_2|600229, mRNA_7842 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600229
Unique NamemRNA_7842
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length971
Alignment locationscaffold_21:483212..484182 -

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Properties
Property NameValue
TranscriptId600315
TrackFilteredModels2
ProteinId600229
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:483212..484182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600229gene_7842Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600229mRNA_7842-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7842CDS_7842Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7842 ID=mRNA_7842|Name=jgi.p|Nanoce1779_2|600229|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
CCTCCCTCCCGTCCTCCCCTCCTCCACCACACGCCCACGTGCCCTTGATG
ACTGTGGGCTGAACCCAATAGCGCGCTGGTCGTGCGTCGAAAGAGGGAGG
GACGAAGGGAGGGAGGGAGGGACTCTACGCCACTTAATCCCTGTGGTTTC
GCAAAGGATTTGGGAAGTGTTTGGAAGAGAAGGAGCGAGGTAGCGAAAAG
GGAAGACGCGACCCTCTAACAATTCATCCAACGTAGGAGACGGGAGGATT
AAGCACCCACTCGTCCGCCCCTTTGCCTGCCTCCCTCCCTCCTTCGAAAC
TTTTAGTGTACATATAGACGCACAGAGCATGCCATATCATTATTATTATA
CGTCCTACAATGAATCAAACGTTAGGAAGAAACACACAAAAAAGACTTCC
CTTCTGCAGGAAGGAGGGAGGGAAAGGTTTGAACGTGCGAATGAGTACAA
AAGAAGGCACGATGTTAGACTGGAAGAAATTCAACCAGTCCACGATAAAA
GCGACAAGGAGAGGAAGAAGGGAGGTGTCCAAGGAAACGCTGGAGAGCTC
GGTATCGTGCGTGTCTACATGTGTGCGTGCGTGAGTGCGTGTGTGTGTGT
GTGTGTGTGTGTGCGTGTATATGTGTGTATATGTGTGTATGTGTGTCAGA
GCGAGAGAGTGTATAATCAATTCATATATATATGTTATATTATAAATATA
CATAATAATTCATAATAGTCCAGATCCATCCACACGAAATTTAGCCAGCT
ATTCCCCTCCCCTCCCGCCTCCCACTTCCTTTCCCTTTTCCTAATGCAAC
GGCGATCAGTGCTGCGTGAAGACTTAGGAGGAGGATACCTTAGGTCAAGG
ACGGCCCAAACCAGCTGGAGAAATTGGCCAGGAGAAACAGAGAATACGAA
TGTGCACACCTCCCTACATTAAAGAATTATACGCATGGCTTTCTTAAGAC
CACCACTTGACACGGGGGAAC
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protein sequence of jgi.p|Nanoce1779_2|600229

>mRNA_7842-protein ID=mRNA_7842-protein|Name=jgi.p|Nanoce1779_2|600229|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MPYHYYYTSYNESNVRKKHTKKTSLLQEGGRERFERANEYKRRHDVRLEE
IQPVHDKSDKERKKGGVQGNAGELGIVRVYMCACVSACVCVCVCVRVYVC
ICVYVCQSERVYNQFIYICYIINIHNNS*
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mRNA from alignment at scaffold_21:483212..484182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7842 ID=mRNA_7842|Name=jgi.p|Nanoce1779_2|600229|organism=Nannochloropsis oceanica|type=mRNA|length=971bp|location=Sequence derived from alignment at scaffold_21:483212..484182- (Nannochloropsis oceanica)
CCTCCCTCCCGTCCTCCCCTCCTCCACCACACGCCCACGTGCCCTTGATG
ACTGTGGGCTGAACCCAATAGCGCGCTGGTCGTGCGTCGAAAGAGGGAGG
GACGAAGGGAGGGAGGGAGGGACTCTACGCCACTTAATCCCTGTGGTTTC
GCAAAGGATTTGGGAAGTGTTTGGAAGAGAAGGAGCGAGGTAGCGAAAAG
GGAAGACGCGACCCTCTAACAATTCATCCAACGTAGGAGACGGGAGGATT
AAGCACCCACTCGTCCGCCCCTTTGCCTGCCTCCCTCCCTCCTTCGAAAC
TTTTAGTGTACATATAGACGCACAGAGCATGCCATATCATTATTATTATA
CGTCCTACAATGAATCAAACGTTAGGAAGAAACACACAAAAAAGACTTCC
CTTCTGCAGGAAGGAGGGAGGGAAAGGTTTGAACGTGCGAATGAGTACAA
AAGAAGGCACGATGTTAGACTGGAAGAAATTCAACCAGTCCACGATAAAA
GCGACAAGGAGAGGAAGAAGGGAGGTGTCCAAGGAAACGCTGGAGAGCTC
GGTATCGTGCGTGTCTACATGTGTGCGTGCGTGAGTGCGTGTGTGTGTGT
GTGTGTGTGTGTGCGTGTATATGTGTGTATATGTGTGTATGTGTGTCAGA
GCGAGAGAGTGTATAATCAATTCATATATATATGTTATATTATAAATATA
CATAATAATTCATAATAGTCCAGATCCATCCACACGAAATTTAGCCAGCT
ATTCCCCTCCCCTCCCGCCTCCCACTTCCTTTCCCTTTTCCTAATGCAAC
GGCGATCAGTGCTGCGTGAAGACTTAGGAGGAGGATACCTTAGGTCAAGG
ACGGCCCAAACCAGCTGGAGAAATTGGCCAGGAGAAACAGAGAATACGAA
TGTGCACACCTCCCTACATTAAAGAATTATACGCATGGCTTTCTTAAGAC
CACCACTTGACACGGGGGAAC
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Coding sequence (CDS) from alignment at scaffold_21:483212..484182-

>mRNA_7842 ID=mRNA_7842|Name=jgi.p|Nanoce1779_2|600229|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_21:483212..484182- (Nannochloropsis oceanica)
ATGCCATATCATTATTATTATACGTCCTACAATGAATCAAACGTTAGGAA
GAAACACACAAAAAAGACTTCCCTTCTGCAGGAAGGAGGGAGGGAAAGGT
TTGAACGTGCGAATGAGTACAAAAGAAGGCACGATGTTAGACTGGAAGAA
ATTCAACCAGTCCACGATAAAAGCGACAAGGAGAGGAAGAAGGGAGGTGT
CCAAGGAAACGCTGGAGAGCTCGGTATCGTGCGTGTCTACATGTGTGCGT
GCGTGAGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTATATGTGTGT
ATATGTGTGTATGTGTGTCAGAGCGAGAGAGTGTATAATCAATTCATATA
TATATGTTATATTATAAATATACATAATAATTCATAA
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Synonyms
Publications