jgi.p|Nanoce1779_2|600222, mRNA_7840 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600222
Unique NamemRNA_7840
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2260
Alignment locationscaffold_21:473971..476230 -

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Properties
Property NameValue
TranscriptId600308
TrackFilteredModels2
ProteinId600222
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:473971..476230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600222gene_7840Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600222mRNA_7840-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7840CDS_7840Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7840 ID=mRNA_7840|Name=jgi.p|Nanoce1779_2|600222|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp
AGCGCGAGCGTAGCTAGGTGGACAAGTGGCTGTGCCTGGTGTTTTCCTTT
TTAGGTGCAAGTTGCAGCACCAGCCAGTAGCCTCACGCGGCAGCCCATTT
CCTTCATCACCCTCCCACGTCAACGTCGTGCCCCGTCTGGCCTGGTCTTT
GGTGCCTGCTTTTTCCAGCCAGAACCTGAAGCGCGTTCAGTTGCGGGGCG
ATGAGAAGACCAGTAAGCAACCGAGGGAGAGGTATCAGGCCCCAGCACCT
CGCCCTTGTCCTTATTGCCCTCCTCCTGGGCATTGCCGTGGGGGTAGTGA
CCGACAGCAGCATCACAAGCAGCAGCAGCAGCAGCAGCGGTGCATCGATA
CACTTGGGGAGCGGCAGCCGCAGCACATTGGGAAAGGGAGGAGGGAAGAG
AAGGCGGAATGGTTTGGAGGAGACCAGGCGGGAAGAGGACAATAAGGAGG
AGCAGCAGCTGCATGAGGGTGCGGACTGGGGAAGAAGAGGCAGAATACAA
ATGCCGAGGTATTCGCCCACTTCTACCTCGTCAACAAGAAGAGTCTGTTC
TAAAGCTGTTGATATAAGGTGCAGGAACAGTGAGGGAGCGACTTCCAGAA
GATCACCATCTGCCGCCGCCGCTGCCGCGTCCCCCGACTCCTTCTTTCAC
CTGTCTTACCACAAGAAACAACTGCAGCAAGGGTTGCAGGATTCTACAGC
AGCAGTCGTACGTGACGCAGCCATCCACCTCTGTCGCTTCGTCAAGGGTG
GAGGCCGCAACTCCGCCGCTGCTGCCGCCCTGGTCGCCAGCGCCGCCGCC
GAGCAAGAGAAGAAGGACAAGGCGTCTACGTTGGTCACAGTCAAATTATT
ATTTCTGTTGTTTTACGGCTCCTTGGGTGCGGTGATGCCTTACTTGCCCG
TGTACTACCACTCGCTTGGCTTGCCCGACAAGCAGATTGGGCAGCTGGGA
GCGATTACGCCCGCGGTGACGTTTGTGGTGGCGCCTCTGTGGGGGGCATT
AGCGGATCAGACGGGCCGGCATAAGGACGTGTTGCTGTTAACCTTCGTGT
TTAGCGTGGTGTCGAGGTTGTTGTTTATATGGAGAACCACGTTTGGATGG
TTGAGTATTTTAGTATTTTGCACCGCGGTGCTTAATGCCCCGGTACGGCC
CTTGCTGGACAGCAGCGTCTTAAACTTGTTGGAGGACAAACGTGAGTACG
GGAAGCAGCGGTTATGGGGTCAGTTCGGGTTTGGCCTGGCCGGGTGCATC
GTGGGACCCTTGCTAATGAGCCATAAATTTGGAGGATATAAGGCCGCGTT
CTACGTGCATGCTTTGATCTCCCTCCCGACCTTGATGATTATGAGGCGAT
TCAACCCTACCCCTGCCTCCCTCCCTTCCTCACCGGCGCCTGCCTTGAAG
AAGGACGGGAAGAAGCGGATAATGATTGCAGCAGGAGCCAAAGGATCGGT
GGGGGGAGCAGTGGAGAGGAAGCCTCACTTTAAGGAGGGGCTGGGTATTG
TAATTCGGAATCCGGACGCGCTGATCTTTTTCTTTTTGGTTTTTGTCATT
GGGGTCTCGAGTGGCATAATCGAAAATTTCGCCTACAAGCGGTTGAGGGA
GGTAGGGGGGGAAGGGACGGTAATGGGCGTGTCTCGTTTTTTTTCCTCAG
TGACAGGCGTGCCTATGTTTTGGTTCTCGGGCCACGTGACCAAGCGTCTG
TCGGTCATGGGGGTGTTGATCCTGTCTCTGTGCTCGTACATGCTGCGGTT
CTTCATCTATGCCTCTATCTCGAACCCGTGGCAAGGCCTGCCTGCTGAGG
CCTTGAGGGGCTTTACGTTTGCAGCCATGTGGGCGAGTTCAACGTACTAC
ACACACAAAATCTCTCCGCCGGGACTGAGCGCCACGATGTTGGGCTTCTT
GAATGGCATGTATGGAGGTCTAGGGCAGTCGACTGGGGCATTGATAGGTG
GCCATTTGAGCCAGCGGTATGGCACGCCACGGACGTTTGTATTGTCGGGC
TTGGCGGATTTGGTTGTGGTGGGTCTGTTTGGGACGTATTGGTGGTTGCA
CCCGAATGCCACGCGGTTGAAGGAGGAGTAAATCGCTAGCGAGTCGCCTT
GGTAATGGTCTCTCTTTATTCACTTAGGAATCAGTGACGCTTGCGAAACG
CAGGCCGATGGGAGATTGGAGTGAGAGAGTACGAAGGGGAGGGAGGGAGG
GAGGGAGGCAAGGCGAGTTAGACGGATGTATGATAGTGTGGTCGCAGCTC
CATGAGGATG
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protein sequence of jgi.p|Nanoce1779_2|600222

>mRNA_7840-protein ID=mRNA_7840-protein|Name=jgi.p|Nanoce1779_2|600222|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MRRPVSNRGRGIRPQHLALVLIALLLGIAVGVVTDSSITSSSSSSSGASI
HLGSGSRSTLGKGGGKRRRNGLEETRREEDNKEEQQLHEGADWGRRGRIQ
MPRYSPTSTSSTRRVCSKAVDIRCRNSEGATSRRSPSAAAAAASPDSFFH
LSYHKKQLQQGLQDSTAAVVRDAAIHLCRFVKGGGRNSAAAAALVASAAA
EQEKKDKASTLVTVKLLFLLFYGSLGAVMPYLPVYYHSLGLPDKQIGQLG
AITPAVTFVVAPLWGALADQTGRHKDVLLLTFVFSVVSRLLFIWRTTFGW
LSILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLAGCI
VGPLLMSHKFGGYKAAFYVHALISLPTLMIMRRFNPTPASLPSSPAPALK
KDGKKRIMIAAGAKGSVGGAVERKPHFKEGLGIVIRNPDALIFFFLVFVI
GVSSGIIENFAYKRLREVGGEGTVMGVSRFFSSVTGVPMFWFSGHVTKRL
SVMGVLILSLCSYMLRFFIYASISNPWQGLPAEALRGFTFAAMWASSTYY
THKISPPGLSATMLGFLNGMYGGLGQSTGALIGGHLSQRYGTPRTFVLSG
LADLVVVGLFGTYWWLHPNATRLKEE*
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mRNA from alignment at scaffold_21:473971..476230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7840 ID=mRNA_7840|Name=jgi.p|Nanoce1779_2|600222|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp|location=Sequence derived from alignment at scaffold_21:473971..476230- (Nannochloropsis oceanica)
AGCGCGAGCGTAGCTAGGTGGACAAGTGGCTGTGCCTGGTGTTTTCCTTT
TTAGGTGCAAGTTGCAGCACCAGCCAGTAGCCTCACGCGGCAGCCCATTT
CCTTCATCACCCTCCCACGTCAACGTCGTGCCCCGTCTGGCCTGGTCTTT
GGTGCCTGCTTTTTCCAGCCAGAACCTGAAGCGCGTTCAGTTGCGGGGCG
ATGAGAAGACCAGTAAGCAACCGAGGGAGAGGTATCAGGCCCCAGCACCT
CGCCCTTGTCCTTATTGCCCTCCTCCTGGGCATTGCCGTGGGGGTAGTGA
CCGACAGCAGCATCACAAGCAGCAGCAGCAGCAGCAGCGGTGCATCGATA
CACTTGGGGAGCGGCAGCCGCAGCACATTGGGAAAGGGAGGAGGGAAGAG
AAGGCGGAATGGTTTGGAGGAGACCAGGCGGGAAGAGGACAATAAGGAGG
AGCAGCAGCTGCATGAGGGTGCGGACTGGGGAAGAAGAGGCAGAATACAA
ATGCCGAGGTATTCGCCCACTTCTACCTCGTCAACAAGAAGAGTCTGTTC
TAAAGCTGTTGATATAAGGTGCAGGAACAGTGAGGGAGCGACTTCCAGAA
GATCACCATCTGCCGCCGCCGCTGCCGCGTCCCCCGACTCCTTCTTTCAC
CTGTCTTACCACAAGAAACAACTGCAGCAAGGGTTGCAGGATTCTACAGC
AGCAGTCGTACGTGACGCAGCCATCCACCTCTGTCGCTTCGTCAAGGGTG
GAGGCCGCAACTCCGCCGCTGCTGCCGCCCTGGTCGCCAGCGCCGCCGCC
GAGCAAGAGAAGAAGGACAAGGCGTCTACGTTGGTCACAGTCAAATTATT
ATTTCTGTTGTTTTACGGCTCCTTGGGTGCGGTGATGCCTTACTTGCCCG
TGTACTACCACTCGCTTGGCTTGCCCGACAAGCAGATTGGGCAGCTGGGA
GCGATTACGCCCGCGGTGACGTTTGTGGTGGCGCCTCTGTGGGGGGCATT
AGCGGATCAGACGGGCCGGCATAAGGACGTGTTGCTGTTAACCTTCGTGT
TTAGCGTGGTGTCGAGGTTGTTGTTTATATGGAGAACCACGTTTGGATGG
TTGAGTATTTTAGTATTTTGCACCGCGGTGCTTAATGCCCCGGTACGGCC
CTTGCTGGACAGCAGCGTCTTAAACTTGTTGGAGGACAAACGTGAGTACG
GGAAGCAGCGGTTATGGGGTCAGTTCGGGTTTGGCCTGGCCGGGTGCATC
GTGGGACCCTTGCTAATGAGCCATAAATTTGGAGGATATAAGGCCGCGTT
CTACGTGCATGCTTTGATCTCCCTCCCGACCTTGATGATTATGAGGCGAT
TCAACCCTACCCCTGCCTCCCTCCCTTCCTCACCGGCGCCTGCCTTGAAG
AAGGACGGGAAGAAGCGGATAATGATTGCAGCAGGAGCCAAAGGATCGGT
GGGGGGAGCAGTGGAGAGGAAGCCTCACTTTAAGGAGGGGCTGGGTATTG
TAATTCGGAATCCGGACGCGCTGATCTTTTTCTTTTTGGTTTTTGTCATT
GGGGTCTCGAGTGGCATAATCGAAAATTTCGCCTACAAGCGGTTGAGGGA
GGTAGGGGGGGAAGGGACGGTAATGGGCGTGTCTCGTTTTTTTTCCTCAG
TGACAGGCGTGCCTATGTTTTGGTTCTCGGGCCACGTGACCAAGCGTCTG
TCGGTCATGGGGGTGTTGATCCTGTCTCTGTGCTCGTACATGCTGCGGTT
CTTCATCTATGCCTCTATCTCGAACCCGTGGCAAGGCCTGCCTGCTGAGG
CCTTGAGGGGCTTTACGTTTGCAGCCATGTGGGCGAGTTCAACGTACTAC
ACACACAAAATCTCTCCGCCGGGACTGAGCGCCACGATGTTGGGCTTCTT
GAATGGCATGTATGGAGGTCTAGGGCAGTCGACTGGGGCATTGATAGGTG
GCCATTTGAGCCAGCGGTATGGCACGCCACGGACGTTTGTATTGTCGGGC
TTGGCGGATTTGGTTGTGGTGGGTCTGTTTGGGACGTATTGGTGGTTGCA
CCCGAATGCCACGCGGTTGAAGGAGGAGTAAATCGCTAGCGAGTCGCCTT
GGTAATGGTCTCTCTTTATTCACTTAGGAATCAGTGACGCTTGCGAAACG
CAGGCCGATGGGAGATTGGAGTGAGAGAGTACGAAGGGGAGGGAGGGAGG
GAGGGAGGCAAGGCGAGTTAGACGGATGTATGATAGTGTGGTCGCAGCTC
CATGAGGATG
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Coding sequence (CDS) from alignment at scaffold_21:473971..476230-

>mRNA_7840 ID=mRNA_7840|Name=jgi.p|Nanoce1779_2|600222|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at scaffold_21:473971..476230- (Nannochloropsis oceanica)
ATGAGAAGACCAGTAAGCAACCGAGGGAGAGGTATCAGGCCCCAGCACCT
CGCCCTTGTCCTTATTGCCCTCCTCCTGGGCATTGCCGTGGGGGTAGTGA
CCGACAGCAGCATCACAAGCAGCAGCAGCAGCAGCAGCGGTGCATCGATA
CACTTGGGGAGCGGCAGCCGCAGCACATTGGGAAAGGGAGGAGGGAAGAG
AAGGCGGAATGGTTTGGAGGAGACCAGGCGGGAAGAGGACAATAAGGAGG
AGCAGCAGCTGCATGAGGGTGCGGACTGGGGAAGAAGAGGCAGAATACAA
ATGCCGAGGTATTCGCCCACTTCTACCTCGTCAACAAGAAGAGTCTGTTC
TAAAGCTGTTGATATAAGGTGCAGGAACAGTGAGGGAGCGACTTCCAGAA
GATCACCATCTGCCGCCGCCGCTGCCGCGTCCCCCGACTCCTTCTTTCAC
CTGTCTTACCACAAGAAACAACTGCAGCAAGGGTTGCAGGATTCTACAGC
AGCAGTCGTACGTGACGCAGCCATCCACCTCTGTCGCTTCGTCAAGGGTG
GAGGCCGCAACTCCGCCGCTGCTGCCGCCCTGGTCGCCAGCGCCGCCGCC
GAGCAAGAGAAGAAGGACAAGGCGTCTACGTTGGTCACAGTCAAATTATT
ATTTCTGTTGTTTTACGGCTCCTTGGGTGCGGTGATGCCTTACTTGCCCG
TGTACTACCACTCGCTTGGCTTGCCCGACAAGCAGATTGGGCAGCTGGGA
GCGATTACGCCCGCGGTGACGTTTGTGGTGGCGCCTCTGTGGGGGGCATT
AGCGGATCAGACGGGCCGGCATAAGGACGTGTTGCTGTTAACCTTCGTGT
TTAGCGTGGTGTCGAGGTTGTTGTTTATATGGAGAACCACGTTTGGATGG
TTGAGTATTTTAGTATTTTGCACCGCGGTGCTTAATGCCCCGGTACGGCC
CTTGCTGGACAGCAGCGTCTTAAACTTGTTGGAGGACAAACGTGAGTACG
GGAAGCAGCGGTTATGGGGTCAGTTCGGGTTTGGCCTGGCCGGGTGCATC
GTGGGACCCTTGCTAATGAGCCATAAATTTGGAGGATATAAGGCCGCGTT
CTACGTGCATGCTTTGATCTCCCTCCCGACCTTGATGATTATGAGGCGAT
TCAACCCTACCCCTGCCTCCCTCCCTTCCTCACCGGCGCCTGCCTTGAAG
AAGGACGGGAAGAAGCGGATAATGATTGCAGCAGGAGCCAAAGGATCGGT
GGGGGGAGCAGTGGAGAGGAAGCCTCACTTTAAGGAGGGGCTGGGTATTG
TAATTCGGAATCCGGACGCGCTGATCTTTTTCTTTTTGGTTTTTGTCATT
GGGGTCTCGAGTGGCATAATCGAAAATTTCGCCTACAAGCGGTTGAGGGA
GGTAGGGGGGGAAGGGACGGTAATGGGCGTGTCTCGTTTTTTTTCCTCAG
TGACAGGCGTGCCTATGTTTTGGTTCTCGGGCCACGTGACCAAGCGTCTG
TCGGTCATGGGGGTGTTGATCCTGTCTCTGTGCTCGTACATGCTGCGGTT
CTTCATCTATGCCTCTATCTCGAACCCGTGGCAAGGCCTGCCTGCTGAGG
CCTTGAGGGGCTTTACGTTTGCAGCCATGTGGGCGAGTTCAACGTACTAC
ACACACAAAATCTCTCCGCCGGGACTGAGCGCCACGATGTTGGGCTTCTT
GAATGGCATGTATGGAGGTCTAGGGCAGTCGACTGGGGCATTGATAGGTG
GCCATTTGAGCCAGCGGTATGGCACGCCACGGACGTTTGTATTGTCGGGC
TTGGCGGATTTGGTTGTGGTGGGTCTGTTTGGGACGTATTGGTGGTTGCA
CCCGAATGCCACGCGGTTGAAGGAGGAGTAA
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Synonyms
Publications