jgi.p|Nanoce1779_2|673042, mRNA_7836 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673042
Unique Name	mRNA_7836
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2258
Alignment location	scaffold_21:464526..466783 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673128
Track	FilteredModels2
ProteinId	673042

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:464526..466783 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673042	gene_7836	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673042	mRNA_7836-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7836	CDS_7836	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:464526..466783-
coding sequence from alignment at scaffold_21:464526..466783-

mRNA sequence

>mRNA_7836 ID=mRNA_7836|Name=jgi.p|Nanoce1779_2|673042|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp
ACCGAGACGCCATCGCCGCTGCCTGCTGGGTGAGCTGCCAGGCAGGTTTG
AGTGGGGGCAAAGGGAGGGAGAGGGTGGGTGTTGGCAGCGCTGCTACAAA
ACCCTGAGGTGGGATTCGTAGCACCGACCCCGCAGCGCGAAGAGCCCACC
AGAAACGCGGCAGAGAGTAAGCCCAAGGACGGGCGGCGGCCGACGGAAGA
GGAAGTCAACGATGTGAAAGCCCCGCCAGGGGTCAAGCGACGCATCCAGT
TTGTGGCACTCGACGGCGCGACAAAGGCGCTGGCACCACGCTGACAGCCC
TTGCGGAACATGGCAGTGGTGCTCTGGAACAAGGCAAGGACAAGGATGAC
GAAAAACGACGCTGTACTGCCTACAGAGGAGGAGAGGCGACGGGTGTGAT
GCATGGAATGCGGCCGACTCAGATGGGGTAACGAAGAAGGAAAGTTAAGA
AGATGCTGCTTGCTGCTGGCTACTTGCGGCGGCGGCTGCGGCAACACGTC
TTCCTTCTTTTTCGTCTTGTCTGTTTGAGGTTGTTTGGAAGTGTGTGCAG
TGGTGTGAGTGTTTGCGATGGTCACGCAGCGTCACTTGTGTCTCCATCGT
CATTTTTGGACCGCCTGCGGATATTATGCGCGTCGATCATCAGCTTTCCT
CTTGTTCGCCCCGGGTTGTACGTCTGCAACCCGAACACGACGCGATGCTC
ACCAAACATACAATCTTGTCACCTCTAAAGCCGGTGTACGCCACAATCTA
TCAAGACAAGATGTGGATCATCTTCACATTGTCCTCGTCCTTGAGTAAAT
TCTGGAACGCCAGCCCGACGGACTTCCTCATGCTTTCAGCTGTCATGCAA
GTCCTTCTTACGATCCTCCTAGGGTGGCTCATGCTCATCCCGCACCAAGC
TTGGGGCCATGACTTGGCGTTTGCGACGCGCCTGCGTTCCCGTCACGTGG
CCATGGCGCATGTGGACTGGGTTATGCTGGCACTGGTTCAATTCGCGGCA
GCGTATGCCATGAGTCTCAAGTCTCCTTCTCAGGCCTTCATAGTTTCTAG
ATGCTTGGTATTTAATGGATGGATCGCCCCGACTGTATATTTGGCCAAGG
CGTGGGGTATAAATGGCTTCCGGTTGGATGGCAAGCGCGGCATGGACACG
CTCATTGGTTTGGCAGGGTTGATGGGCATTGTCACCTTCACCTACGGCTG
GGCTATGATTGTGGGGGCGTGGTGGCTCTAAATCACGTAAACTAATGCTC
TCAACCAAAAATACTGTAAATAAGGAGAAATTAAATGTGCCGTGGCAGTA
GATTTCAGAAAATTTGCACAAAGTTTTGACATTTTATCCCGTTCTTGATC
TTCTTTGGTGATAGTTTATATAAAATGCGGTTTTGGTTTGATCCTCACCG
AGGTTTCCCTTTCTACTACTCTTATCTTGTCTGCTCTTCGGTGCTTGTTG
CAAAAAAGAAGTTCTTCGTTTTGCTTCCACATACACACTGTCATCTGCCA
CGTCGTGTGCCGCGCCTTCTAGTTGCCCTCCTTTTCCTTTTTCTTTTTTC
TTCTTCATAATCATTTTCTTTATCTTGTCTCGTGGTTGCTTTTGTTGCTG
GCTTTACAATCAAGCCGCCTCCTCCAGTCAAACACCGAACCAACCAAAAT
GCCTTTGTCCGTCTCTGCTTTCCTCCTTCGCTCCCTACTTTTTGTGCGTC
ACTACAGCATTCACCTTCTGCGCAAACCGCAACGACAACACACTCTCCGA
CAAGGATGCGGCCGCGGGCGACAGATTACATACCATCAGCGCCTTACAAT
CTCCACCCAACGAGTGCTTCAACAAACTCGTCAATGCCGACTCCCGGAAC
GGCACATGCCTCTCCTTCTTTCCCAAAGCCGTTATAACGTTCCCTAACAC
ACTCAAACTCTTGTTGATGCTCTGCGTCTCCTTCAACAAGTCTGAGTGGG
CGTTAACCCCGCTCTTCTTCATCCTCTCCGAACCCGCCAGGTCGATCAAA
TGCAGACAACCATGCCTCACAATGCCCCTAGAGCTCTCCGCTTCAATCTT
CAGGGTAAACACCACATGCGACCGGGACGAATCCGCGTTGCTCCTCGTCC
GTTTCACGCACCGACGGGCCAAGGCCTCACCGACCAAGGCCGTCACCTCC
GACGCCGAGTGAACAGGCAATGAAGTTAACCCAGGCACCGCCTCTCCCTC
CCTCCCTCCCTCCCCAAAGCAATGCCGGACCTCCAAACCCCGCCTGCTAC
TCCTTTTC

protein sequence of jgi.p|Nanoce1779_2|673042

>mRNA_7836-protein ID=mRNA_7836-protein|Name=jgi.p|Nanoce1779_2|673042|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MRVDHQLSSCSPRVVRLQPEHDAMLTKHTILSPLKPVYATIYQDKMWIIF
TLSSSLSKFWNASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFA
TRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWI
APTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIVGAWW
L*

mRNA from alignment at scaffold_21:464526..466783-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7836 ID=mRNA_7836|Name=jgi.p|Nanoce1779_2|673042|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at scaffold_21:464526..466783- (Nannochloropsis oceanica)
ACCGAGACGCCATCGCCGCTGCCTGCTGGGTGAGCTGCCAGGCAGGTTTG
AGTGGGGGCAAAGGGAGGGAGAGGGTGGGTGTTGGCAGCGCTGCTACAAA
ACCCTGAGGTGGGATTCGTAGCACCGACCCCGCAGCGCGAAGAGCCCACC
AGAAACGCGGCAGAGAGTAAGCCCAAGGACGGGCGGCGGCCGACGGAAGA
GGAAGTCAACGATGTGAAAGCCCCGCCAGGGGTCAAGCGACGCATCCAGT
TTGTGGCACTCGACGGCGCGACAAAGGCGCTGGCACCACGCTGACAGCCC
TTGCGGAACATGGCAGTGGTGCTCTGGAACAAGGCAAGGACAAGGATGAC
GAAAAACGACGCTGTACTGCCTACAGAGGAGGAGAGGCGACGGGTGTGAT
GCATGGAATGCGGCCGACTCAGATGGGGTAACGAAGAAGGAAAGTTAAGA
AGATGCTGCTTGCTGCTGGCTACTTGCGGCGGCGGCTGCGGCAACACGTC
TTCCTTCTTTTTCGTCTTGTCTGTTTGAGGTTGTTTGGAAGTGTGTGCAG
TGGTGTGAGTGTTTGCGATGGTCACGCAGCGTCACTTGTGTCTCCATCGT
CATTTTTGGACCGCCTGCGGATATTATGCGCGTCGATCATCAGCTTTCCT
CTTGTTCGCCCCGGGTTGTACGTCTGCAACCCGAACACGACGCGATGCTC
ACCAAACATACAATCTTGTCACCTCTAAAGCCGGTGTACGCCACAATCTA
TCAAGACAAGATGTGGATCATCTTCACATTGTCCTCGTCCTTGAGTAAAT
TCTGGAACGCCAGCCCGACGGACTTCCTCATGCTTTCAGCTGTCATGCAA
GTCCTTCTTACGATCCTCCTAGGGTGGCTCATGCTCATCCCGCACCAAGC
TTGGGGCCATGACTTGGCGTTTGCGACGCGCCTGCGTTCCCGTCACGTGG
CCATGGCGCATGTGGACTGGGTTATGCTGGCACTGGTTCAATTCGCGGCA
GCGTATGCCATGAGTCTCAAGTCTCCTTCTCAGGCCTTCATAGTTTCTAG
ATGCTTGGTATTTAATGGATGGATCGCCCCGACTGTATATTTGGCCAAGG
CGTGGGGTATAAATGGCTTCCGGTTGGATGGCAAGCGCGGCATGGACACG
CTCATTGGTTTGGCAGGGTTGATGGGCATTGTCACCTTCACCTACGGCTG
GGCTATGATTGTGGGGGCGTGGTGGCTCTAAATCACGTAAACTAATGCTC
TCAACCAAAAATACTGTAAATAAGGAGAAATTAAATGTGCCGTGGCAGTA
GATTTCAGAAAATTTGCACAAAGTTTTGACATTTTATCCCGTTCTTGATC
TTCTTTGGTGATAGTTTATATAAAATGCGGTTTTGGTTTGATCCTCACCG
AGGTTTCCCTTTCTACTACTCTTATCTTGTCTGCTCTTCGGTGCTTGTTG
CAAAAAAGAAGTTCTTCGTTTTGCTTCCACATACACACTGTCATCTGCCA
CGTCGTGTGCCGCGCCTTCTAGTTGCCCTCCTTTTCCTTTTTCTTTTTTC
TTCTTCATAATCATTTTCTTTATCTTGTCTCGTGGTTGCTTTTGTTGCTG
GCTTTACAATCAAGCCGCCTCCTCCAGTCAAACACCGAACCAACCAAAAT
GCCTTTGTCCGTCTCTGCTTTCCTCCTTCGCTCCCTACTTTTTGTGCGTC
ACTACAGCATTCACCTTCTGCGCAAACCGCAACGACAACACACTCTCCGA
CAAGGATGCGGCCGCGGGCGACAGATTACATACCATCAGCGCCTTACAAT
CTCCACCCAACGAGTGCTTCAACAAACTCGTCAATGCCGACTCCCGGAAC
GGCACATGCCTCTCCTTCTTTCCCAAAGCCGTTATAACGTTCCCTAACAC
ACTCAAACTCTTGTTGATGCTCTGCGTCTCCTTCAACAAGTCTGAGTGGG
CGTTAACCCCGCTCTTCTTCATCCTCTCCGAACCCGCCAGGTCGATCAAA
TGCAGACAACCATGCCTCACAATGCCCCTAGAGCTCTCCGCTTCAATCTT
CAGGGTAAACACCACATGCGACCGGGACGAATCCGCGTTGCTCCTCGTCC
GTTTCACGCACCGACGGGCCAAGGCCTCACCGACCAAGGCCGTCACCTCC
GACGCCGAGTGAACAGGCAATGAAGTTAACCCAGGCACCGCCTCTCCCTC
CCTCCCTCCCTCCCCAAAGCAATGCCGGACCTCCAAACCCCGCCTGCTAC
TCCTTTTC

Coding sequence (CDS) from alignment at scaffold_21:464526..466783-

>mRNA_7836 ID=mRNA_7836|Name=jgi.p|Nanoce1779_2|673042|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_21:464526..466783- (Nannochloropsis oceanica)
ATGCGCGTCGATCATCAGCTTTCCTCTTGTTCGCCCCGGGTTGTACGTCT
GCAACCCGAACACGACGCGATGCTCACCAAACATACAATCTTGTCACCTC
TAAAGCCGGTGTACGCCACAATCTATCAAGACAAGATGTGGATCATCTTC
ACATTGTCCTCGTCCTTGAGTAAATTCTGGAACGCCAGCCCGACGGACTT
CCTCATGCTTTCAGCTGTCATGCAAGTCCTTCTTACGATCCTCCTAGGGT
GGCTCATGCTCATCCCGCACCAAGCTTGGGGCCATGACTTGGCGTTTGCG
ACGCGCCTGCGTTCCCGTCACGTGGCCATGGCGCATGTGGACTGGGTTAT
GCTGGCACTGGTTCAATTCGCGGCAGCGTATGCCATGAGTCTCAAGTCTC
CTTCTCAGGCCTTCATAGTTTCTAGATGCTTGGTATTTAATGGATGGATC
GCCCCGACTGTATATTTGGCCAAGGCGTGGGGTATAAATGGCTTCCGGTT
GGATGGCAAGCGCGGCATGGACACGCTCATTGGTTTGGCAGGGTTGATGG
GCATTGTCACCTTCACCTACGGCTGGGCTATGATTGTGGGGGCGTGGTGG
CTCTAA

Synonyms

Publications