jgi.p|Nanoce1779_2|170363, mRNA_7832 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|170363
Unique Name	mRNA_7832
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1668
Alignment location	scaffold_21:444264..446253 -

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Properties


Property Name	Value
TranscriptId	170449
Track	FilteredModels2
ProteinId	170363

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:444264..446253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|170363	gene_7832	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|170363	mRNA_7832-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7832	CDS_7832	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:444264..446253-
coding sequence from alignment at scaffold_21:444264..446253-

mRNA sequence

>mRNA_7832 ID=mRNA_7832|Name=jgi.p|Nanoce1779_2|170363|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
TGAAGGGTTGTGGTCTCGTGTAAAGATGGCGAGGGAGGAAGGGAGGGAGG
AAGGGAGGGAGGAAGGGCAGAGGGAGGTAAATGCGATGAGGGCAATGGTG
GAGGAGACAAGGAAGGAGAGAGGAATGAGCTGGCGGCCCATGTGGTGCTG
TTGGAGAAACAGGTGAGGGAGCAGAAAGGGCGAAAGGATGCGGAGCAGGA
GGTTATGGTGGGACTGCGTGCGACGAATGGTCGGTTGAAGGAGCAAACGC
AAGCCATGGTAAAAGAGCGCGAAGGGATGAAGGAGGCGCTGGCATCGCTA
CAAGCGGCGGTGGTTGGAATGAAGGAGGAGGGGGAAAGGGAGAAGTGGAA
GCTGACCGAGTGCTTGAAAGATATCAAGACAGAATTGAAGCGGAGAGAGA
AAGTGGCAGTGGCTCACATCAAGGAGCGGGCCCTACTGGAAGATCAACGC
CTGGCCTCCTCCCAGGCCTACCACCGCGCCACGAGCCGGTGCGAGGAACT
GGCCGAGGAAGTGAGGGAGAGCGAGGAGGAGATCGCTGCCCTTCGACGGG
TGCTCGAGGAAAAGCTGGCATTGCAGAGGAGGGTATTTATGTTGGAGGAG
GAGTTGAAGGAGGGAGGGAGGGAGAGGGCGGGGTGGGAGGTGCGGGCCAT
CAAAGCAGAGAAGGAGCTTGAGAGCCTCAGGAAGACGATGCAGGAGGTGG
GAGGGATGGAGGGAGGGTTATTGGTGGCGACGCTGGAAAGGCAGGTGCAG
CAGCTGGAGGAGGAGGGGTGGGAGAGGGAGGTTGCAGCGATGACGAAGGA
AGTACGGGCCTTGGCTGGCGTGACGGAGCATCAAAACGGAAAGCAGCGGG
TGCAACAAGAGGAGAAGATGAAGGGGACAATAAAAAGGTCGCCTTTCAAA
GAGCTTTTATGGGCCGCTGCTGCTGTTGCCCCTGCAGCTGCTAACTCTCT
TTCTGACACTGAGAGTGCGTGGCAGCAGCAGCAGTCGCAGCAGCAGTCAC
AGCAGCAGAGGTCTGTCTTGTCATCATCACGGAAGGGGGAGGGCTTGTTT
TCTCCACCCATGAGTGACGACAGAGCCGGTTATAGGGGAAAGCAGCAGCA
GCAGCAACAACAACCAGGGCGGCAGCGGCGTCTCGAGACTCCTTGCCCGG
CATTTGCGATCGCGTGCGACGAAAAGGAAGAGGAGGAGGAGGAGGAGAAG
GAGGACCAGGAGGACCAGGAGGACCAGGAGGAGGATGAGGGGGACTTTGA
AGGAGGAAGCGACAAGGAGAATCCAAAAGTGGATGACGCGCTAGTCCAGC
AATTGCTTGGCTCTGCACGAAAACACCAACTGCAACAGGATGAGGAGAGG
GCGCGAGAAAAGCAGCAGCAGCAGCAGCAGGTGGATGAGGATGTGAAGCT
CAAGTCTTTGAGTGGCCTAGGTTGGAAAGGAGTGGAGGCCGACAAGGAGA
ATCTCGTCAATTGGATCCTCACGTCCCCGGGGCTCGAGCCCTTCAAGCAG
CAGCAGCAGCATCAATACCGGCAAGGGGGTGCGCGAGAACGGAGGCTATA
ATTTTGTGGGCTTCATTTTGGTTCGAGGGTGGGGAAGATCAGAGAGGGAC
TTGCAGATATGTACCTTCTCTAGAAGTGCCTCATGTCATTCAAAACGAAG
CACGAATGTAAATAAAAT

protein sequence of jgi.p|Nanoce1779_2|170363

>mRNA_7832-protein ID=mRNA_7832-protein|Name=jgi.p|Nanoce1779_2|170363|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MVGLRATNGRLKEQTQAMVKEREGMKEALASLQAAVVGMKEEGEREKWKL
TECLKDIKTELKRREKVAVAHIKERALLEDQRLASSQAYHRATSRCEELA
EEVRESEEEIAALRRVLEEKLALQRRVFMLEEELKEGGRERAGWEVRAIK
AEKELESLRKTMQEVGGMEGGLLVATLERQVQQLEEEGWEREVAAMTKEV
RALAGVTEHQNGKQRVQQEEKMKGTIKRSPFKELLWAAAAVAPAAANSLS
DTESAWQQQQSQQQSQQQRSVLSSSRKGEGLFSPPMSDDRAGYRGKQQQQ
QQQPGRQRRLETPCPAFAIACDEKEEEEEEEKEDQEDQEDQEEDEGDFEG
GSDKENPKVDDALVQQLLGSARKHQLQQDEERAREKQQQQQQVDEDVKLK
SLSGLGWKGVEADKENLVNWILTSPGLEPFKQQQQHQYRQGGARERRL*

mRNA from alignment at scaffold_21:444264..446253-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7832 ID=mRNA_7832|Name=jgi.p|Nanoce1779_2|170363|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at scaffold_21:444264..446253- (Nannochloropsis oceanica)
TGAAGGGTTGTGGTCTCGTGTAAAGATGGCGAGGGAGGAAGGGAGGGAGG
AAGGGAGGGAGGAAGGGCAGAGGGAGGTAAATGCGATGAGGGCAATGGTG
GAGGAGACAAGGAAGGAGGTGGAGGAGGAAAGGAGGAGAAGAGAGGAGAG
TGAGGAGGCGAGACGGCTCGAAGGGGAGGGACAAGGATGGGAGGAAGAGA
GGAATGAGCTGGCGGCCCATGTGGTGCTGTTGGAGAAACAGGTGAGGGAG
CAGAAAGGGCGAAAGGATGCGGAGCAGGAGGTTATGGTGGGACTGCGTGC
GACGAATGGTCGGTTGAAGGAGCAAACGCAAGCCATGGTAAAAGAGCGCG
AAGGGATGAAGGAGGCGCTGGCATCGCTACAAGCGGCGGTGGTTGGAATG
AAGGAGGAGGGGGAAAGGGAGAAGTGGAAGCTGACCGAGTGCTTGAAAGA
TATCAAGACAGAATTGAAGCGGAGAGAGAAAGTGGCAGTGGCTCACATCA
AGGTATGTCTTAGAGAGTGGGATTGTCGCATGTCATGTTTGATTTTTATC
TCTCCCAACTCCCCCTCCCTCCCTCTGGCTCTGTTTTCAGATGCCACGGT
CATTCTTCCGCCCCCCTTATAATCCTTCCTTCTCTCTCTTAAAATGATGG
CACTCTTGTAAGACCACTGGTTCGCCATTACTTAAGCTCTCTCTTTCCCT
CTGTCCCTCCTTCCGTCCCACCCTCCCTCCCTTCCCTCCTTTAAGGAGCG
GGCCCTACTGGAAGATCAACGCCTGGCCTCCTCCCAGGCCTACCACCGCG
CCACGAGCCGGTGCGAGGAACTGGCCGAGGAAGTGAGGGAGAGCGAGGAG
GAGATCGCTGCCCTTCGACGGGTGCTCGAGGAAAAGCTGGCATTGCAGAG
GAGGGTATTTATGTTGGAGGAGGAGTTGAAGGAGGGAGGGAGGGAGAGGG
CGGGGTGGGAGGTGCGGGCCATCAAAGCAGAGAAGGAGCTTGAGAGCCTC
AGGAAGACGATGCAGGAGGTGGGAGGGATGGAGGGAGGGTTATTGGTGGC
GACGCTGGAAAGGCAGGTGCAGCAGCTGGAGGAGGAGGGGTGGGAGAGGG
AGGTTGCAGCGATGACGAAGGAAGTACGGGCCTTGGCTGGCGTGACGGAG
CATCAAAACGGAAAGCAGCGGGTGCAACAAGAGGAGAAGATGAAGGGGAC
AATAAAAAGGTCGCCTTTCAAAGAGCTTTTATGGGCCGCTGCTGCTGTTG
CCCCTGCAGCTGCTAACTCTCTTTCTGACACTGAGAGTGCGTGGCAGCAG
CAGCAGTCGCAGCAGCAGTCACAGCAGCAGAGGTCTGTCTTGTCATCATC
ACGGAAGGGGGAGGGCTTGTTTTCTCCACCCATGAGTGACGACAGAGCCG
GTTATAGGGGAAAGCAGCAGCAGCAGCAACAACAACCAGGGCGGCAGCGG
CGTCTCGAGACTCCTTGCCCGGCATTTGCGATCGCGTGCGACGAAAAGGA
AGAGGAGGAGGAGGAGGAGAAGGAGGACCAGGAGGACCAGGAGGACCAGG
AGGAGGATGAGGGGGACTTTGAAGGAGGAAGCGACAAGGAGAATCCAAAA
GTGGATGACGCGCTAGTCCAGCAATTGCTTGGCTCTGCACGAAAACACCA
ACTGCAACAGGATGAGGAGAGGGCGCGAGAAAAGCAGCAGCAGCAGCAGC
AGGTGGATGAGGATGTGAAGCTCAAGTCTTTGAGTGGCCTAGGTTGGAAA
GGAGTGGAGGCCGACAAGGAGAATCTCGTCAATTGGATCCTCACGTCCCC
GGGGCTCGAGCCCTTCAAGCAGCAGCAGCAGCATCAATACCGGCAAGGGG
GTGCGCGAGAACGGAGGCTATAATTTTGTGGGCTTCATTTTGGTTCGAGG
GTGGGGAAGATCAGAGAGGGACTTGCAGATATGTACCTTCTCTAGAAGTG
CCTCATGTCATTCAAAACGAAGCACGAATGTAAATAAAAT

Coding sequence (CDS) from alignment at scaffold_21:444264..446253-

>mRNA_7832 ID=mRNA_7832|Name=jgi.p|Nanoce1779_2|170363|organism=Nannochloropsis oceanica|type=CDS|length=2694bp|location=Sequence derived from alignment at scaffold_21:444264..446253- (Nannochloropsis oceanica)
GAGCGGGCCCTACTGGAAGATCAACGCCTGGCCTCCTCCCAGGCCTACCA
CCGCGCCACGAGCCGGTGCGAGGAACTGGCCGAGGAAGTGAGGGAGAGCG
AGGAGGAGATCGCTGCCCTTCGACGGGTGCTCGAGGAAAAGCTGGCATTG
CAGAGGAGGGTATTTATGTTGGAGGAGGAGTTGAAGGAGGGAGGGAGGGA
GAGGGCGGGGTGGGAGGTGCGGGCCATCAAAGCAGAGAAGGAGCTTGAGA
GCCTCAGGAAGACGATGCAGGAGGTGGGAGGGATGGAGGGAGGGTTATTG
GTGGCGACGCTGGAAAGGCAGGTGCAGCAGCTGGAGGAGGAGGGGTGGGA
GAGGGAGGTTGCAGCGATGACGAAGGAAGTACGGGCCTTGGCTGGCGTGA
CGGAGCATCAAAACGGAAAGCAGCGGGTGCAACAAGAGGAGAAGATGAAG
GGGACAATAAAAAGGTCGCCTTTCAAAGAGCTTTTATGGGCCGCTGCTGC
TGTTGCCCCTGCAGCTGCTAACTCTCTTTCTGACACTGAGAGTGCGTGGC
AGCAGCAGCAGTCGCAGCAGCAGTCACAGCAGCAGAGGTCTGTCTTGTCA
TCATCACGGAAGGGGGAGGGCTTGTTTTCTCCACCCATGAGTGACGACAG
AGCCGGTTATAGGGGAAAGCAGCAGCAGCAGCAACAACAACCAGGGCGGC
AGCGGCGTCTCGAGACTCCTTGCCCGGCATTTGCGATCGCGTGCGACGAA
AAGGAAGAGGAGGAGGAGGAGGAGAAGGAGGACCAGGAGGACCAGGAGGA
CCAGGAGGAGGATGAGGGGGACTTTGAAGGAGGAAGCGACAAGGAGAATC
CAAAAGTGGATGACGCGCTAGTCCAGCAATTGCTTGGCTCTGCACGAAAA
CACCAACTGCAACAGGATGAGGAGAGGGCGCGAGAAAAGCAGCAGCAGCA
GCAGCAGGTGGATGAGGATGTGAAGCTCAAGTCTTTGAGTGGCCTAGGTT
GGAAAGGAGTGGAGGCCGACAAGGAGAATCTCGTCAATTGGATCCTCACG
TCCCCGGGGCTCGAGCCCTTCAAGCAGCAGCAGCAGCATCAATACCGGCA
AGGGGGTGCGCGAGAACGGAGGCTATAAATGGTGGGACTGCGTGCGACGA
ATGGTCGGTTGAAGGAGCAAACGCAAGCCATGGTAAAAGAGCGCGAAGGG
ATGAAGGAGGCGCTGGCATCGCTACAAGCGGCGGTGGTTGGAATGAAGGA
GGAGGGGGAAAGGGAGAAGTGGAAGCTGACCGAGTGCTTGAAAGATATCA
AGACAGAATTGAAGCGGAGAGAGAAAGTGGCAGTGGCTCACATCAAGGAG
CGGGCCCTACTGGAAGATCAACGCCTGGCCTCCTCCCAGGCCTACCACCG
CGCCACGAGCCGGTGCGAGGAACTGGCCGAGGAAGTGAGGGAGAGCGAGG
AGGAGATCGCTGCCCTTCGACGGGTGCTCGAGGAAAAGCTGGCATTGCAG
AGGAGGGTATTTATGTTGGAGGAGGAGTTGAAGGAGGGAGGGAGGGAGAG
GGCGGGGTGGGAGGTGCGGGCCATCAAAGCAGAGAAGGAGCTTGAGAGCC
TCAGGAAGACGATGCAGGAGGTGGGAGGGATGGAGGGAGGGTTATTGGTG
GCGACGCTGGAAAGGCAGGTGCAGCAGCTGGAGGAGGAGGGGTGGGAGAG
GGAGGTTGCAGCGATGACGAAGGAAGTACGGGCCTTGGCTGGCGTGACGG
AGCATCAAAACGGAAAGCAGCGGGTGCAACAAGAGGAGAAGATGAAGGGG
ACAATAAAAAGGTCGCCTTTCAAAGAGCTTTTATGGGCCGCTGCTGCTGT
TGCCCCTGCAGCTGCTAACTCTCTTTCTGACACTGAGAGTGCGTGGCAGC
AGCAGCAGTCGCAGCAGCAGTCACAGCAGCAGAGGTCTGTCTTGTCATCA
TCACGGAAGGGGGAGGGCTTGTTTTCTCCACCCATGAGTGACGACAGAGC
CGGTTATAGGGGAAAGCAGCAGCAGCAGCAACAACAACCAGGGCGGCAGC
GGCGTCTCGAGACTCCTTGCCCGGCATTTGCGATCGCGTGCGACGAAAAG
GAAGAGGAGGAGGAGGAGGAGAAGGAGGACCAGGAGGACCAGGAGGACCA
GGAGGAGGATGAGGGGGACTTTGAAGGAGGAAGCGACAAGGAGAATCCAA
AAGTGGATGACGCGCTAGTCCAGCAATTGCTTGGCTCTGCACGAAAACAC
CAACTGCAACAGGATGAGGAGAGGGCGCGAGAAAAGCAGCAGCAGCAGCA
GCAGGTGGATGAGGATGTGAAGCTCAAGTCTTTGAGTGGCCTAGGTTGGA
AAGGAGTGGAGGCCGACAAGGAGAATCTCGTCAATTGGATCCTCACGTCC
CCGGGGCTCGAGCCCTTCAAGCAGCAGCAGCAGCATCAATACCGGCAAGG
GGGTGCGCGAGAACGGAGGCTATAAATGGTGGGACTGCGTGCGACGAATG
GTCGGTTGAAGGAGCAAACGCAAGCCATGGTAAAAGAGCGCGAAGGGATG
AAGGAGGCGCTGGCATCGCTACAAGCGGCGGTGGTTGGAATGAAGGAGGA
GGGGGAAAGGGAGAAGTGGAAGCTGACCGAGTGCTTGAAAGATATCAAGA
CAGAATTGAAGCGGAGAGAGAAAGTGGCAGTGGCTCACATCAAG

Synonyms

Publications