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Properties
| Property Name | Value |
|---|
| TranscriptId | 170402 |
| Track | FilteredModels2 |
| ProteinId | 170316 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:437135..440496 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7830 ID=mRNA_7830|Name=jgi.p|Nanoce1779_2|170316|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
GTCAAATCAAGTTTTTATAGTTGCTTTAATTGTTCTTGTGGCTATGATGA
AGACTTAACTGATATGGCTCCAGGAACATACTCACGCATGTGTTGAACGT
TTCCTGTCGTGAGAGTCCCAGCCCATGTCACAACTGCTTTCCAGCGGGCT
CATACCCGGCAATTGCAGTCCTTCCATTCCATACACAATAATCATACACT
CCGCACCACACTTACGCAATTCTCTATCACCTCTCCCCACGATCTTCACC
TCCCTCCACAGGCATTGTAGCAGCCGCAAAAGGACCTGTTCCAAAATGGG
TCGTGTGTTCCTCTGCTACAAACCTCTCCACCCACCCACCGGGGTAGAGC
ACTGCTGCTTCGCCCGCTTCACCGGCCCGCAAGACCAAAACCTCATCACC
GCGCACGCCAACCTTCTCGAAATCTACACCCTGCACACCCTGCCCAACGG
AGAAGTCGTCTCAGAGCTTACTGCTTCCTTCACGCTCGCCGCCCGCATCG
AGGGGCATTTGGATCTGGCGCAAGGAGGAGAAGGAGGAGGGGAGGAGGGA
GGGAAGGAGGGGAAAGGAAATGGCGACGCGTTTGCGGAAGACAAGGTTGA
AGAGAGCGAAGAGGAGGATGAGGAGGAGGAGGTGGACGACGACGACGAAG
AGGAGGACGACGAGGACCCGAACGCCACGGCTGACTTTGATTTCGATCCC
ACCACCTCTTCTTCCTCCGCTTCTTCCTTCCCCTCCGCTCTCTCCTCCAA
GCCCTACATTCTCAAGCTCCGCGAAGGCCTGGGAGTCCGTGGCCTTGTCA
AGGACATCTGCTTTCTTGGTGGGTTTATGCAACCGACCCTTGCTATCCTT
CACGCCCTCCCTCCCGGGTGGGGTGGGACCGTGGCAGCTCGTGCCCACAG
CGGCCATATCTCTGTGGTATCTTGCGCGGCCGGTGGGAAAGCGACTGCCC
TCTTCCACATTAATCTTCTCCCGCACGATGTATTTAAAATCATCACACCC
CCCTCGGGGCCATTGGAGTCTTCCCTCTTGGTTCTGAGCACGAATGCGAT
CCACTTCATCCAAGATGGCCGGGTGCGAACCGTTGCGGCCACCAACGGGT
ACGCGTCTACAACGGTAGCAACGGCCCGACAGCCGTTGCAAAAAGCGGAG
CAAACTGGTTTAAATTGCCCGATAGCGCTCGACGGGGCAAGGGTAGGGTT
TCTTAATTCCAAGGTGGCGCTGCTGGCCGTGGGGACGGGGGAACTGGTCG
GGTTAAGGCTGGAGACAAGGGGGGGGAAAGTCACTGCTGTAAGGCTACAG
AAAATGGGTGGAGGTGCAGGTACAGGGGTGTTCCCGAGTGCGATAGCTGT
GTGGAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTTTTTGGCGAGTC
GGACGGTGGACTCGCTGTTGATGGGATTTGGGTTGAGTGAGATCGAGGAG
GGGAAGGAGGGAGGGGGAGAGAAGGAGATGGAGGGTGGTGGGAAGGAGGG
AGGAAGGAGGAGGAAGATGATAAAGAGTGAGCCGGGGGTGGATGGGGAGG
CGATGGAGGTGGAGGTTGAGGAGGAGGATGGGTAGGGGCGTCATTGAGAG
TTGTGTGGAAGGGGAGGGCAACCCAAGAGATGGTGCTTCACGATGAGAGG
GAGGTCGGGGGGGCAGGATTGCCAGCAGCAGCAGCAGTTGCAGCAGTATG
TGTGGAAAATCCGTTTTTGTTGCTCGTGCTGACGAATGGGAGC back to topprotein sequence of jgi.p|Nanoce1779_2|170316 >mRNA_7830-protein ID=mRNA_7830-protein|Name=jgi.p|Nanoce1779_2|170316|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MSQLLSSGLIPGNCSPSIPYTIIIHSAPHLRNSLSPLPTIFTSLHRHCSS
RKRTCSKMGRVFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEI
YTLHTLPNGEVVSELTASFTLAARIEGHLDLAQGGEGGGEEGGKEGKGNG
DAFAEDKVEESEEEDEEEEVDDDDEEEDDEDPNATADFDFDPTTSSSSAS
SFPSALSSKPYILKLREGLGVRGLVKDICFLGGFMQPTLAILHALPPGWG
GTVAARAHSGHISVVSCAAGGKATALFHINLLPHDVFKIITPPSGPLESS
LLVLSTNAIHFIQDGRVRTVAATNGYASTTVATARQPLQKAEQTGLNCPI
ALDGARVGFLNSKVALLAVGTGELVGLRLETRGGKVTAVRLQKMGGGAGT
GVFPSAIAVWRGREGGREGRVFLASRTVDSLLMGFGLSEIEEGKEGGGEK
EMEGGGKEGGRRRKMIKSEPGVDGEAMEVEVEEEDG* back to topmRNA from alignment at scaffold_21:437135..440496+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7830 ID=mRNA_7830|Name=jgi.p|Nanoce1779_2|170316|organism=Nannochloropsis oceanica|type=mRNA|length=3362bp|location=Sequence derived from alignment at scaffold_21:437135..440496+ (Nannochloropsis oceanica)
GTCAAATCAAGTTTTTATAGTTGCTTTAATTGTTCTTGTGGCTATGATGA
AGACTTAACTGATATGGCTCCAGGAACATACTCACGCATGTGTTGAACGT
TTCCTGTCGTGAGAGTCCCAGCCCATGTCACAACTGCTTTCCAGCGGGCT
CATACCCGGCAATTGCAGTCCTTCCATTCCATACACAATAATCATACACT
CCGCACCACACTTACGCAATTCTCTATCACCTCTCCCCACGATCTTCACC
TCCCTCCACAGGCATTGTAGCAGCCGCAAAAGGACCTGTTCCAAAATGGG
TCGTGTGTTCCTCTGCTACAAACCTCTCCACCCACCCACCGGGGTAGAGC
ACTGCTGCTTCGCCCGCTTCACCGGCCCGCAAGACCAAAACCTCATCACC
GCGCACGCCAACCTTCTCGAAATCTACACCCTGCACACCCTGCCCAACGG
AGAAGTCGTCTCAGAGCTTACTGCTTCCTTCACGCTCGCCGCCCGCATCG
AGGCCTTGAACGTTCTTCCCCTCCCCCTCAGACCCGACCTCCCCGACGCC
CTCCTCATCACCAGCCGCCCCGCCAAGGCTGTCCTGGTCGCTTACGAACG
GGAAGCCGGCGAACTCGTCGTCCTGGACGTCTACAGCTTCGAACACGATG
CCCTCGGCTTGGGCTCGGCCGTGCGTGCCGAACCCCCCGCAGTTGATCGT
CTCGAGGGGATCAATGACTCGGCTCCCACTGTCATGGACCCTTCGGAGCG
ATGTGCCGGGATGTTGGTCTATGGCACCCAAGTGGCCATCATGCCTTTCC
AACGTGACGTGCTCGCCAAGAAAGTGTTGCGGCTTCTCTTGGGGGCTCGC
CCCGATCAAAGCTCAAGGAGGAGACACCTTTTTCCTGTCCGCATCCCTCC
AAGGGAGACGTTGGCCACGACACTCATGTCTGCCGCGGTCCACAGGAAAG
GGCGACAAGGAGGAGGCAAGCGGAAGCGAAGAGGGCAGGGAGATGAGGAA
GCAGGGAAGAAAGGAGGGAGGCCGGGGCCGGGGCAGGGGCAGGCGGTTGC
GGGAGAGGGGGAGGGGCATTTGGATCTGGCGCAAGGAGGAGAAGGAGGAG
GGGAGGAGGGAGGGAAGGAGGGGAAAGGAAATGGCGACGCGTTTGCGGAA
GACAAGGTTGAAGAGAGCGAAGAGGAGGATGAGGAGGAGGAGGTGGACGA
CGACGACGAAGAGGAGGACGACGAGGACCCGAACGCCACGGCTGACTTTG
ATTTCGATCCCACCACCTCTTCTTCCTCCGCTTCTTCCTTCCCCTCCGCT
CTCTCCTCCAAGCCCTACATTCTCAAGCTCCGCGAAGGCCTGGGAGTCCG
TGGCCTTGTCAAGGACATCTGCTTTCTTGGTGGGTTTATGCAACCGACCC
TTGCTATCCTTCACGCCCTCCCTCCCGGGTGGGGTGGGACCGTGGCAGCT
CGTGCCCACAGCGGCCATATCTCTGTGGTATCTTGCGCGGCCGGTGGGAA
AGCGACTGCCCTCTTCCACATTAATCTTCTCCCGCACGATGTATTTAAAA
TCATCACACCCCCCTCGGGGCCATTGGAGTCTTCCCTCTTGGTTCTGAGC
ACGAATGCGATCCACTTCATCCAAGATGGCCGGGTGCGAACCGTTGCGGC
CACCAACGGGTACGCGTCTACAACGGTAGCAACGGCCCGACAGCCGTTGC
AAAAAGCGGAGCAAACTGGTTTAAATTGCCCGATAGCGCTCGACGGGGCA
AGGGTAGGGTTTCTTAATTCCAAGGTGGCGCTGCTGGCCGTGGGGACGGG
GGAACTGGTCGGGTTAAGGCTGGAGACAAGGGGGGGGAAAGTCACTGCTG
TAAGGCTACAGAAAATGGGTGGAGGTGCAGGTACAGGGGTGTTCCCGAGT
GCGATAGCTGTGTGGAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTT
TTTGGCGAGTCGGACGGTGGACTCGCTGTTGATGGGATTTGGGTTGAGTG
AGATCGAGGAGGGGAAGGAGGGAGGGGGAGAGAAGGAGATGGAGGGTGGT
GGGAAGGAGGGAGGAAGGAGGAGGAAGATGATAAAGAGTGAGCCGGGGGT
GGATGGGGAGGCGATGGAGGTGGAGGTTGAGGAGGAGGGAGGGAGGGAGA
AAGGGATGAATGGACACCATCCTTTTCCCACTGGAGAGGAGGAGGAGGAG
GAGGAGGAAGAAGAAGTGACAGAGGAAGAGTCGGAGGAGCTCGTCTTGTA
CGGTCACGTCCTGGAGGGCGACTCATCCCTTGCCGCTTGCAGGAGAAAGG
GAGGAGGAGGAGGAGGAGGGGGGGGCAGCAGGAGGAGGAGAGGAAGAGAT
TCAAGTGGACCTGGGGTCCCGTGTATCGCTAGTCATCCTGGATGCCTGGC
CTTCACTAGGCCCATTGGTGGGGTCGACGCTGGCGCCGCGCGTACCCGGA
AGTGTATACACGCAAAGCCAGCTGTTGGGCCCGGAGCGCTTGATCGCCGA
AAATGACACAGGCACGTCCTCCCTCTTCCTCCCCCCCTCCCTCGCCAACC
CCGCCACCGACGACATCGGCAAGAAGGATAAGGAGGAGGAGGAAGAAGAA
GGAGAAGAAATAGAACACAAGTCAAATGCCCGGGTCAAGAAGGAGGGAGA
GGACGGAATCGAGGGGAATGAGGAAGAAGAGGAGGAGACGAAGCCCGCCT
TCCTGAAACCTCCCCGCACTACCTCCACCGGCGGCGGCGGAGGACCAGGA
ATGGAGCTCATGTGCTGTGCCGGTCAGGGTAGGAAAGGCTCGTTAATTGT
CATGCGCCGTGGACTCATATCCGACACCCTCGGTCGGGCCGTGCTCCCTG
GCCCCTGCTTCGACCTCTGGTGCATGCCCCCCTCCTCCTTCCCTCCCTCC
TCCTCCTCCGCTGCCGGCTCGGCACGAGGGAGGGAAGAAGAAGGGGGGGG
ACGGGGAGGGTACATTCTTCTTTCCCTCCCTACTGAAACAGTCGTTTATC
ACTACACCCGTGACGCCCTCCTCTCCGCTGCTCCCTCCTCTTCCACCCTC
CTGTCCCCCTTTTACTTACAAGCGCCCACCCTCGCCTTGGCTCCGATTGG
GAAAGAGCATCAAGGCCTTGTCCAAATCTACGGCGGCAGCAGCAGCAATC
CGCCCCCTCCCTCCCTCCCCTTCCTCCCTCCCTCCCTGCCTGGAGGATGG
GTAGGGGCGTCATTGAGAGTTGTGTGGAAGGGGAGGGCAACCCAAGAGAT
GGTGCTTCACGATGAGAGGGAGGTCGGGGGGGCAGGATTGCCAGCAGCAG
CAGCAGTTGCAGCAGTATGTGTGGAAAATCCGTTTTTGTTGCTCGTGCTG
ACGAATGGGAGC back to topCoding sequence (CDS) from alignment at scaffold_21:437135..440496+ >mRNA_7830 ID=mRNA_7830|Name=jgi.p|Nanoce1779_2|170316|organism=Nannochloropsis oceanica|type=CDS|length=4383bp|location=Sequence derived from alignment at scaffold_21:437135..440496+ (Nannochloropsis oceanica)
ATGTCACAACTGCTTTCCAGCGGGCTCATACCCGGCAATTGCAGTCCTTC
CATTCCATACACAATAATCATACACTCCGCACCACACTTACGCAATTCTC
TATCACCTCTCCCCACGATCTTCACCTCCCTCCACAGGCATTGTAGCAGC
CGCAAAAGGACCTGTTCCAAAATGGGTCGTGTGTTCCTCTGCTACAAACC
TCTCCACCCACCCACCGGGGTAGAGCACTGCTGCTTCGCCCGCTTCACCG
GCCCGCAAGACCAAAACCTCATCACCGCGCACGCCAACCTTCTCGAAATC
TACACCCTGCACACCCTGCCCAACGGAGAAGTCGTCTCAGAGCTTACTGC
TTCCTTCACGCTCGCCGCCCGCATCGAGGGGCATTTGGATCTGGCGCAAG
GAGGAGAAGGAGGAGGGGAGGAGGGAGGGAAGGAGGGGAAAGGAAATGGC
GACGCGTTTGCGGAAGACAAGGTTGAAGAGAGCGAAGAGGAGGATGAGGA
GGAGGAGGTGGACGACGACGACGAAGAGGAGGACGACGAGGACCCGAACG
CCACGGCTGACTTTGATTTCGATCCCACCACCTCTTCTTCCTCCGCTTCT
TCCTTCCCCTCCGCTCTCTCCTCCAAGCCCTACATTCTCAAGCTCCGCGA
AGGCCTGGGAGTCCGTGGCCTTGTCAAGGACATCTGCTTTCTTGGTGGGT
TTATGCAACCGACCCTTGCTATCCTTCACGCCCTCCCTCCCGGGTGGGGT
GGGACCGTGGCAGCTCGTGCCCACAGCGGCCATATCTCTGTGGTATCTTG
CGCGGCCGGTGGGAAAGCGACTGCCCTCTTCCACATTAATCTTCTCCCGC
ACGATGTATTTAAAATCATCACACCCCCCTCGGGGCCATTGGAGTCTTCC
CTCTTGGTTCTGAGCACGAATGCGATCCACTTCATCCAAGATGGCCGGGT
GCGAACCGTTGCGGCCACCAACGGGTACGCGTCTACAACGGTAGCAACGG
CCCGACAGCCGTTGCAAAAAGCGGAGCAAACTGGTTTAAATTGCCCGATA
GCGCTCGACGGGGCAAGGGTAGGGTTTCTTAATTCCAAGGTGGCGCTGCT
GGCCGTGGGGACGGGGGAACTGGTCGGGTTAAGGCTGGAGACAAGGGGGG
GGAAAGTCACTGCTGTAAGGCTACAGAAAATGGGTGGAGGTGCAGGTACA
GGGGTGTTCCCGAGTGCGATAGCTGTGTGGAGGGGGAGGGAGGGAGGGAG
GGAGGGGAGGGTGTTTTTGGCGAGTCGGACGGTGGACTCGCTGTTGATGG
GATTTGGGTTGAGTGAGATCGAGGAGGGGAAGGAGGGAGGGGGAGAGAAG
GAGATGGAGGGTGGTGGGAAGGAGGGAGGAAGGAGGAGGAAGATGATAAA
GAGTGAGCCGGGGGTGGATGGGGAGGCGATGGAGGTGGAGGTTGAGGAGG
AGGATGGGTAGATGTCACAACTGCTTTCCAGCGGGCTCATACCCGGCAAT
TGCAGTCCTTCCATTCCATACACAATAATCATACACTCCGCACCACACTT
ACGCAATTCTCTATCACCTCTCCCCACGATCTTCACCTCCCTCCACAGGC
ATTGTAGCAGCCGCAAAAGGACCTGTTCCAAAATGGGTCGTGTGTTCCTC
TGCTACAAACCTCTCCACCCACCCACCGGGGTAGAGCACTGCTGCTTCGC
CCGCTTCACCGGCCCGCAAGACCAAAACCTCATCACCGCGCACGCCAACC
TTCTCGAAATCTACACCCTGCACACCCTGCCCAACGGAGAAGTCGTCTCA
GAGCTTACTGCTTCCTTCACGCTCGCCGCCCGCATCGAGGGGCATTTGGA
TCTGGCGCAAGGAGGAGAAGGAGGAGGGGAGGAGGGAGGGAAGGAGGGGA
AAGGAAATGGCGACGCGTTTGCGGAAGACAAGGTTGAAGAGAGCGAAGAG
GAGGATGAGGAGGAGGAGGTGGACGACGACGACGAAGAGGAGGACGACGA
GGACCCGAACGCCACGGCTGACTTTGATTTCGATCCCACCACCTCTTCTT
CCTCCGCTTCTTCCTTCCCCTCCGCTCTCTCCTCCAAGCCCTACATTCTC
AAGCTCCGCGAAGGCCTGGGAGTCCGTGGCCTTGTCAAGGACATCTGCTT
TCTTGGTGGGTTTATGCAACCGACCCTTGCTATCCTTCACGCCCTCCCTC
CCGGGTGGGGTGGGACCGTGGCAGCTCGTGCCCACAGCGGCCATATCTCT
GTGGTATCTTGCGCGGCCGGTGGGAAAGCGACTGCCCTCTTCCACATTAA
TCTTCTCCCGCACGATGTATTTAAAATCATCACACCCCCCTCGGGGCCAT
TGGAGTCTTCCCTCTTGGTTCTGAGCACGAATGCGATCCACTTCATCCAA
GATGGCCGGGTGCGAACCGTTGCGGCCACCAACGGGTACGCGTCTACAAC
GGTAGCAACGGCCCGACAGCCGTTGCAAAAAGCGGAGCAAACTGGTTTAA
ATTGCCCGATAGCGCTCGACGGGGCAAGGGTAGGGTTTCTTAATTCCAAG
GTGGCGCTGCTGGCCGTGGGGACGGGGGAACTGGTCGGGTTAAGGCTGGA
GACAAGGGGGGGGAAAGTCACTGCTGTAAGGCTACAGAAAATGGGTGGAG
GTGCAGGTACAGGGGTGTTCCCGAGTGCGATAGCTGTGTGGAGGGGGAGG
GAGGGAGGGAGGGAGGGGAGGGTGTTTTTGGCGAGTCGGACGGTGGACTC
GCTGTTGATGGGATTTGGGTTGAGTGAGATCGAGGAGGGGAAGGAGGGAG
GGGGAGAGAAGGAGATGGAGGGTGGTGGGAAGGAGGGAGGAAGGAGGAGG
AAGATGATAAAGAGTGAGCCGGGGGTGGATGGGGAGGCGATGGAGGTGGA
GGTTGAGGAGGAGGATGGGTAGATGTCACAACTGCTTTCCAGCGGGCTCA
TACCCGGCAATTGCAGTCCTTCCATTCCATACACAATAATCATACACTCC
GCACCACACTTACGCAATTCTCTATCACCTCTCCCCACGATCTTCACCTC
CCTCCACAGGCATTGTAGCAGCCGCAAAAGGACCTGTTCCAAAATGGGTC
GTGTGTTCCTCTGCTACAAACCTCTCCACCCACCCACCGGGGTAGAGCAC
TGCTGCTTCGCCCGCTTCACCGGCCCGCAAGACCAAAACCTCATCACCGC
GCACGCCAACCTTCTCGAAATCTACACCCTGCACACCCTGCCCAACGGAG
AAGTCGTCTCAGAGCTTACTGCTTCCTTCACGCTCGCCGCCCGCATCGAG
GGGCATTTGGATCTGGCGCAAGGAGGAGAAGGAGGAGGGGAGGAGGGAGG
GAAGGAGGGGAAAGGAAATGGCGACGCGTTTGCGGAAGACAAGGTTGAAG
AGAGCGAAGAGGAGGATGAGGAGGAGGAGGTGGACGACGACGACGAAGAG
GAGGACGACGAGGACCCGAACGCCACGGCTGACTTTGATTTCGATCCCAC
CACCTCTTCTTCCTCCGCTTCTTCCTTCCCCTCCGCTCTCTCCTCCAAGC
CCTACATTCTCAAGCTCCGCGAAGGCCTGGGAGTCCGTGGCCTTGTCAAG
GACATCTGCTTTCTTGGTGGGTTTATGCAACCGACCCTTGCTATCCTTCA
CGCCCTCCCTCCCGGGTGGGGTGGGACCGTGGCAGCTCGTGCCCACAGCG
GCCATATCTCTGTGGTATCTTGCGCGGCCGGTGGGAAAGCGACTGCCCTC
TTCCACATTAATCTTCTCCCGCACGATGTATTTAAAATCATCACACCCCC
CTCGGGGCCATTGGAGTCTTCCCTCTTGGTTCTGAGCACGAATGCGATCC
ACTTCATCCAAGATGGCCGGGTGCGAACCGTTGCGGCCACCAACGGGTAC
GCGTCTACAACGGTAGCAACGGCCCGACAGCCGTTGCAAAAAGCGGAGCA
AACTGGTTTAAATTGCCCGATAGCGCTCGACGGGGCAAGGGTAGGGTTTC
TTAATTCCAAGGTGGCGCTGCTGGCCGTGGGGACGGGGGAACTGGTCGGG
TTAAGGCTGGAGACAAGGGGGGGGAAAGTCACTGCTGTAAGGCTACAGAA
AATGGGTGGAGGTGCAGGTACAGGGGTGTTCCCGAGTGCGATAGCTGTGT
GGAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTTTTTGGCGAGTCGG
ACGGTGGACTCGCTGTTGATGGGATTTGGGTTGAGTGAGATCGAGGAGGG
GAAGGAGGGAGGGGGAGAGAAGGAGATGGAGGGTGGTGGGAAGGAGGGAG
GAAGGAGGAGGAAGATGATAAAGAGTGAGCCGGGGGTGGATGGGGAGGCG
ATGGAGGTGGAGGTTGAGGAGGAGGATGGGTAG back to top
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