jgi.p|Nanoce1779_2|600186, mRNA_7828 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600186
Unique Name	mRNA_7828
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1721
Alignment location	scaffold_21:432147..433867 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600272
Track	FilteredModels2
ProteinId	600186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:432147..433867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600186	gene_7828	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600186	mRNA_7828-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7828	CDS_7828	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:432147..433867+
coding sequence from alignment at scaffold_21:432147..433867+

mRNA sequence

>mRNA_7828 ID=mRNA_7828|Name=jgi.p|Nanoce1779_2|600186|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
ACAGGGACCAAGAGAGAACCAGTCAACCTCCTGCCTCCCTGCTCCCCTAT
CTCTCCACTTCCTCCATGCCGCGAGGGGGCACGCCCACGACGATGGGCCA
TGCGCCTGCACAACACCACCAACCCCGGATAATACATGCCCTGTCCCTCT
TCCTCGTTCTTCTCCTTGCGTCATGCACGCACGCCTTCTTCTCCCTCTCT
ACATCGCCCTCCGCCTCCTTCCTTCTCCCGCAAATAGTCTCCCTCCGTCC
CACCACCCGCAGCCCTCCCTCCTCCTCCTCCTCCTCCTCTTCCTTTGTCC
TCTTCCTGCACCGCCATCCTCCTCCTTCCCAATCACGCCTCCGTCTCTCC
TCCTCCTCCTCGAACGCCAACGAAGATGAAAATGGCGATGAAGGCACGAG
ACCCAACACTCCCGATGAAAACGCAGCAATCTGGGGTCTGACCGACCTAG
GTAACAGCAACTTTGGTAAATTTGGCTCCGACAAAGATCCACATCGCAAC
ATCCGCCCACAGTTCATGGATCCAAAAGCCGCCAGCTGGAAGAGCGAGAA
CGGTGTTGACTTCCTCCCCGAGCTCCGCGAGATACAAATGCGGATCCAAG
GCGTTAATGTCTACCTTGTCGGCATGCCTGGCTCCGGTAAGACGACCCTC
GGCCGCATGCTAGCTGAGGGGCTTAATTATAGATGGATGGATCTGGATCA
ATTCATCGAGCAAAAACTGGGGAAATCGGCCACGAAAGTCTTTGAGGAAG
ACGGGGAGGAAACGTGGCGAAAGCAAGAGACGCTGGGCATGGGCGCCTTA
CAGACTTATGTCCAAACAGTCGTGAGCACCGGTGGAGGCATCATGCAACG
CAAGGAAAACTTCCCGTTTCTCCATAGCGGACTCATCGTCTGGCTTGACC
TACCCCCAGACGCGATCATTGCTCGCTTGCAGGCCTCAGGGGAGATTGCC
AAACGTCCCCTGCTTAAACAAGCGCCAGACCCAGTCGCCGTCCTCCGCGA
ACTTTATGATGCCCGAAAGGCCAACTACGCCCTTGCCGATGTCCGGGTTG
TCTTACGCGCAGAAGACGATGGCATCAAATGCCTCAAACGGGTCACACAT
CGAATCATCGAAGAACTCGACCTGAGGCCGCCCAAGGCGAAAATGTGGGA
AGAAAAACGGAATAAAATGAAGAACCTTTGGGAGACCATGAAGGCCAAAG
GGACAGCGACGGACATCAATGAGGTGCCGGCGGAGGAAGGGGGGGAAAAT
CCGGCGATCGGCGCGATTGCGGCACTGAACGCGGAGGATGGGGATAAGAA
GAAGGATAAGGGAGGGAAGCCGAAGAAGAAGGGCTTTGGAACAGCGGTGC
GGAAGAATGGAGGGGGAGGAGGGAAGGCAGCAAGTAGGGAGGGAGGGCCG
GTGGTGCCGTCAGCGGCCACAGCAGCAGTAGGGTCACAGGGAGTAGGTTT
TGGGCTGGGGTTGGAGGAGTATATGAAGGGAGGGGAGGAGGGAGAGAAGG
AGGGAGGGGACGAGGAGCAGCAGGTGGCCGATGCCGCATAGATTGTGGAA
AGTTACGGAGATGCATATACCGAGAGAAATTTCATGCTAGAAGGAAATAA
ATCAATAAGCAGTAAGAAGAAGAAGAAGAAGAAGAACAACAACAACAACA
AAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAG
AAGAAGAAGAAGAAGAAGAAG

protein sequence of jgi.p|Nanoce1779_2|600186

>mRNA_7828-protein ID=mRNA_7828-protein|Name=jgi.p|Nanoce1779_2|600186|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MPRGGTPTTMGHAPAQHHQPRIIHALSLFLVLLLASCTHAFFSLSTSPSA
SFLLPQIVSLRPTTRSPPSSSSSSSSFVLFLHRHPPPSQSRLRLSSSSSN
ANEDENGDEGTRPNTPDENAAIWGLTDLGNSNFGKFGSDKDPHRNIRPQF
MDPKAASWKSENGVDFLPELREIQMRIQGVNVYLVGMPGSGKTTLGRMLA
EGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQ
TVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLL
KQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEE
LDLRPPKAKMWEEKRNKMKNLWETMKAKGTATDINEVPAEEGGENPAIGA
IAALNAEDGDKKKDKGGKPKKKGFGTAVRKNGGGGGKAASREGGPVVPSA
ATAAVGSQGVGFGLGLEEYMKGGEEGEKEGGDEEQQVADAA*

mRNA from alignment at scaffold_21:432147..433867+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7828 ID=mRNA_7828|Name=jgi.p|Nanoce1779_2|600186|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp|location=Sequence derived from alignment at scaffold_21:432147..433867+ (Nannochloropsis oceanica)
ACAGGGACCAAGAGAGAACCAGTCAACCTCCTGCCTCCCTGCTCCCCTAT
CTCTCCACTTCCTCCATGCCGCGAGGGGGCACGCCCACGACGATGGGCCA
TGCGCCTGCACAACACCACCAACCCCGGATAATACATGCCCTGTCCCTCT
TCCTCGTTCTTCTCCTTGCGTCATGCACGCACGCCTTCTTCTCCCTCTCT
ACATCGCCCTCCGCCTCCTTCCTTCTCCCGCAAATAGTCTCCCTCCGTCC
CACCACCCGCAGCCCTCCCTCCTCCTCCTCCTCCTCCTCTTCCTTTGTCC
TCTTCCTGCACCGCCATCCTCCTCCTTCCCAATCACGCCTCCGTCTCTCC
TCCTCCTCCTCGAACGCCAACGAAGATGAAAATGGCGATGAAGGCACGAG
ACCCAACACTCCCGATGAAAACGCAGCAATCTGGGGTCTGACCGACCTAG
GTAACAGCAACTTTGGTAAATTTGGCTCCGACAAAGATCCACATCGCAAC
ATCCGCCCACAGTTCATGGATCCAAAAGCCGCCAGCTGGAAGAGCGAGAA
CGGTGTTGACTTCCTCCCCGAGCTCCGCGAGATACAAATGCGGATCCAAG
GCGTTAATGTCTACCTTGTCGGCATGCCTGGCTCCGGTAAGACGACCCTC
GGCCGCATGCTAGCTGAGGGGCTTAATTATAGATGGATGGATCTGGATCA
ATTCATCGAGCAAAAACTGGGGAAATCGGCCACGAAAGTCTTTGAGGAAG
ACGGGGAGGAAACGTGGCGAAAGCAAGAGACGCTGGGCATGGGCGCCTTA
CAGACTTATGTCCAAACAGTCGTGAGCACCGGTGGAGGCATCATGCAACG
CAAGGAAAACTTCCCGTTTCTCCATAGCGGACTCATCGTCTGGCTTGACC
TACCCCCAGACGCGATCATTGCTCGCTTGCAGGCCTCAGGGGAGATTGCC
AAACGTCCCCTGCTTAAACAAGCGCCAGACCCAGTCGCCGTCCTCCGCGA
ACTTTATGATGCCCGAAAGGCCAACTACGCCCTTGCCGATGTCCGGGTTG
TCTTACGCGCAGAAGACGATGGCATCAAATGCCTCAAACGGGTCACACAT
CGAATCATCGAAGAACTCGACCTGAGGCCGCCCAAGGCGAAAATGTGGGA
AGAAAAACGGAATAAAATGAAGAACCTTTGGGAGACCATGAAGGCCAAAG
GGACAGCGACGGACATCAATGAGGTGCCGGCGGAGGAAGGGGGGGAAAAT
CCGGCGATCGGCGCGATTGCGGCACTGAACGCGGAGGATGGGGATAAGAA
GAAGGATAAGGGAGGGAAGCCGAAGAAGAAGGGCTTTGGAACAGCGGTGC
GGAAGAATGGAGGGGGAGGAGGGAAGGCAGCAAGTAGGGAGGGAGGGCCG
GTGGTGCCGTCAGCGGCCACAGCAGCAGTAGGGTCACAGGGAGTAGGTTT
TGGGCTGGGGTTGGAGGAGTATATGAAGGGAGGGGAGGAGGGAGAGAAGG
AGGGAGGGGACGAGGAGCAGCAGGTGGCCGATGCCGCATAGATTGTGGAA
AGTTACGGAGATGCATATACCGAGAGAAATTTCATGCTAGAAGGAAATAA
ATCAATAAGCAGTAAGAAGAAGAAGAAGAAGAAGAACAACAACAACAACA
AAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAG
AAGAAGAAGAAGAAGAAGAAG

Coding sequence (CDS) from alignment at scaffold_21:432147..433867+

>mRNA_7828 ID=mRNA_7828|Name=jgi.p|Nanoce1779_2|600186|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_21:432147..433867+ (Nannochloropsis oceanica)
ATGCCGCGAGGGGGCACGCCCACGACGATGGGCCATGCGCCTGCACAACA
CCACCAACCCCGGATAATACATGCCCTGTCCCTCTTCCTCGTTCTTCTCC
TTGCGTCATGCACGCACGCCTTCTTCTCCCTCTCTACATCGCCCTCCGCC
TCCTTCCTTCTCCCGCAAATAGTCTCCCTCCGTCCCACCACCCGCAGCCC
TCCCTCCTCCTCCTCCTCCTCCTCTTCCTTTGTCCTCTTCCTGCACCGCC
ATCCTCCTCCTTCCCAATCACGCCTCCGTCTCTCCTCCTCCTCCTCGAAC
GCCAACGAAGATGAAAATGGCGATGAAGGCACGAGACCCAACACTCCCGA
TGAAAACGCAGCAATCTGGGGTCTGACCGACCTAGGTAACAGCAACTTTG
GTAAATTTGGCTCCGACAAAGATCCACATCGCAACATCCGCCCACAGTTC
ATGGATCCAAAAGCCGCCAGCTGGAAGAGCGAGAACGGTGTTGACTTCCT
CCCCGAGCTCCGCGAGATACAAATGCGGATCCAAGGCGTTAATGTCTACC
TTGTCGGCATGCCTGGCTCCGGTAAGACGACCCTCGGCCGCATGCTAGCT
GAGGGGCTTAATTATAGATGGATGGATCTGGATCAATTCATCGAGCAAAA
ACTGGGGAAATCGGCCACGAAAGTCTTTGAGGAAGACGGGGAGGAAACGT
GGCGAAAGCAAGAGACGCTGGGCATGGGCGCCTTACAGACTTATGTCCAA
ACAGTCGTGAGCACCGGTGGAGGCATCATGCAACGCAAGGAAAACTTCCC
GTTTCTCCATAGCGGACTCATCGTCTGGCTTGACCTACCCCCAGACGCGA
TCATTGCTCGCTTGCAGGCCTCAGGGGAGATTGCCAAACGTCCCCTGCTT
AAACAAGCGCCAGACCCAGTCGCCGTCCTCCGCGAACTTTATGATGCCCG
AAAGGCCAACTACGCCCTTGCCGATGTCCGGGTTGTCTTACGCGCAGAAG
ACGATGGCATCAAATGCCTCAAACGGGTCACACATCGAATCATCGAAGAA
CTCGACCTGAGGCCGCCCAAGGCGAAAATGTGGGAAGAAAAACGGAATAA
AATGAAGAACCTTTGGGAGACCATGAAGGCCAAAGGGACAGCGACGGACA
TCAATGAGGTGCCGGCGGAGGAAGGGGGGGAAAATCCGGCGATCGGCGCG
ATTGCGGCACTGAACGCGGAGGATGGGGATAAGAAGAAGGATAAGGGAGG
GAAGCCGAAGAAGAAGGGCTTTGGAACAGCGGTGCGGAAGAATGGAGGGG
GAGGAGGGAAGGCAGCAAGTAGGGAGGGAGGGCCGGTGGTGCCGTCAGCG
GCCACAGCAGCAGTAGGGTCACAGGGAGTAGGTTTTGGGCTGGGGTTGGA
GGAGTATATGAAGGGAGGGGAGGAGGGAGAGAAGGAGGGAGGGGACGAGG
AGCAGCAGGTGGCCGATGCCGCATAG

Synonyms

Publications