jgi.p|Nanoce1779_2|600183, mRNA_7827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600183
Unique NamemRNA_7827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2445
Alignment locationscaffold_21:429265..431709 -

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Properties
Property NameValue
TranscriptId600269
TrackFilteredModels2
ProteinId600183
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:429265..431709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600183gene_7827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600183mRNA_7827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7827CDS_7827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7827 ID=mRNA_7827|Name=jgi.p|Nanoce1779_2|600183|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp
ACAGCTGCAATCCCCACAACTGCAACCATGACGCAGATCGATGTGCCCAA
GGCCCTTCAGCCTACGTAAGTAACCCTTTCTGTTTATTCTGGCGGTCTGT
CGCCATCCCTCCCCTTCTTTCATCCCTCCTTCACACCATATTTATGACCA
TCTTGCACATCTCTTTCCCTCCTCTCCGCTCCTGTCAACTGTCTCCTACC
ACCCTCCAACATGCATATGTCGAACCCCTTCCCGACTCCCTCCCTCCATT
CCCTCTCCTGCAAAACATCACAGGGACCAGGACATGCACAAGCTGGTGTA
TGCCTCTGTGCACATCGGCACCAAGAATTCTGACAAGCTGATGGAGCCGT
ACATCTGGCGTCGACGTGTGGACAACACCTACGTCCTCAACCTTGGCAAG
ACCTGGGAGAAACTTGTACTGGCCGCCCGCGTCATCGTAGCTATCGAGAA
CCCGAAAGACGTCATTGCCATCTCTGCTCGACCTTACGGCCAGCGCGCTG
TGCTCAAATTTGCGCAGTACACAGGTGCTCAGTCCATTGCTGGGCGATTC
ACGCCCGGGACCTTCACAAACCAGATCACGAAGCAATTTCGCGAGCCGCG
TCTGTTGGTGGTGACTGACCCCCGAACCGACTCCCAGTCGGTGCATGAGG
CCTCGTATGTGAACGTGCCCGTTATTGCCTTTGCCGACTCGGACTCCCCG
TTGCAATACGTGGATATCGCCATTCCGGGGAACAACAAGGGTCGTCTCTC
GATTGGCCTGTTGTACTGGCTTTTGGCGCGGGAGGTGCTGCGTCTGCGAG
GCACCATCAGCAGGACGGAAGAGTGGGATGTGCCCGTGGATCTGTTTTTC
TACCGCGAGCCCGATGAGATCGAGAAAGAAGAGGACAAGCCCGCAGCCTT
CGCCACCGAGCCGGAGATGCCTGACGCGGCACCCGTCGCCCCTGGTGTGG
ATGACTTTGGCGTGGTGGGCGCGGGTGTCGTGCCTTCCTACGGTGAGCCT
GTATCGGCCTCGTGGGATGGGGCAGCGGCGCCTGTGGATCAGGCCGGGGC
ATCTTCTTGGGAGCAACCGACAGAGAGCGGATGGACAAATTGAGGGGGGA
GGGAGGAAAGGGTGGCGATTGAGCCGACATGGCTGGTGGTGCCGCTGCGG
TGATGGCTGGTCGAGGTCGAGGGGGGAAGGAGTGTGGGGAGGAGGGTATG
ACCTTTGAAAAGGGGACGGAGAATAGGATAGAGAAGGGGAAGAGGTGGTG
CGTCAAGCGACAGAGAAAAGGCGGTGAAGTCTGACCCTTGAAATTTCGAT
CGCATGGTCAAGAAATGGAGAGGAGGATAATGAAGGGGAAAAAGGAAAAG
ACAAGAACCCTTTTCGAAAACCCGCCGTTTTTTGTTCTCCTGAACGTAAT
TTATTTTATTTTTTTGTGCTCTATGTCGATGAAGGCGTTGTGCGGCTGGG
TGTCCAGATATGCTCTCTAAACGTCGAGACTACCGGAAAGACTGAAGCTG
GACGTGAAAGAGAGAGATGAAAAAACTCAAAGCAAAAGATGGGATCTTTT
TGGTTTTGTGATGTGTGCGTCCTTGTGTATGCAGGCTAGCTGACTTAAGG
AATTCGGTCTTCGACTTTTAGTTGTTGGTGGTGGTGTTGTCCTCTTACTG
TGCATTGCTCTCACTCTCTTTCTTTCCCCCTCATTCTCGGTGTGACTCTC
TCTCCCTCGCTGCGTCACTCTCTCTCCTTTTCTGTTGAATTATCTGTCTT
CCTCTTCTCCGTCTCTCTTTTGAGACACCGTCATTCTCTGATGCTCGTAT
CCTCCCTCTCCCTCCTTCCCTTTCTTCCTGCCTTCCTCGGTGTCTGTCAT
CTATTCACTAGCGAACGCGACTAGATTCTGAAGCTATTTTTTCCCAATGC
ACCTCCTCTGGATGGGCTCTTCTCTTACTCTCTATATCTGTGAGTCTGTG
TGTCTGCGTGCGCGTCGATCAAAGAAAGATGCTTCACACATGCCTTCATT
CCTTCCCCAGCGGCCTCGTCCTCGTCCTCGTCCTCGTCCTCTCGGGCTAT
GTTATTCTTGGTTGCTGCTTCCCGTCAAGCCCTACTACCATCTCTCCCTC
CCTAGCTTCTTGCCTGCCTTCATGTGCGCACCTAAATCTGTATTCGTATC
TACTGAATGAACCATGAAGACTCACATATAATGAATTACTGGCTTGGTGA
AAAGATAGTTGACGCCACATGCCGCTATCCCTGCCGTCATTAATTCCAGA
AACGCCCGAAGAGAAGGGGGCCATGAAGGAGGCAGTGATGAGTCAGCACG
AACCATGCGCAACATTTTGGCGATTGAATCAAAGAGGTGCACACTCGCAA
ACAGACACCGCCACATCTCTTCATTCTCCTCCTCGCCCGCTCAGAGGCAA
ATGCTGCATCCTCCCCATCCTCATCCTACCCCTCCCTCATCCTAC
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protein sequence of jgi.p|Nanoce1779_2|600183

>mRNA_7827-protein ID=mRNA_7827-protein|Name=jgi.p|Nanoce1779_2|600183|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARV
IVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITK
QFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGN
NKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEE
DKPAAFATEPEMPDAAPVAPGVDDFGVVGAGVVPSYGEPVSASWDGAAAP
VDQAGASSWEQPTESGWTN*
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mRNA from alignment at scaffold_21:429265..431709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7827 ID=mRNA_7827|Name=jgi.p|Nanoce1779_2|600183|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp|location=Sequence derived from alignment at scaffold_21:429265..431709- (Nannochloropsis oceanica)
ACAGCTGCAATCCCCACAACTGCAACCATGACGCAGATCGATGTGCCCAA
GGCCCTTCAGCCTACGTAAGTAACCCTTTCTGTTTATTCTGGCGGTCTGT
CGCCATCCCTCCCCTTCTTTCATCCCTCCTTCACACCATATTTATGACCA
TCTTGCACATCTCTTTCCCTCCTCTCCGCTCCTGTCAACTGTCTCCTACC
ACCCTCCAACATGCATATGTCGAACCCCTTCCCGACTCCCTCCCTCCATT
CCCTCTCCTGCAAAACATCACAGGGACCAGGACATGCACAAGCTGGTGTA
TGCCTCTGTGCACATCGGCACCAAGAATTCTGACAAGCTGATGGAGCCGT
ACATCTGGCGTCGACGTGTGGACAACACCTACGTCCTCAACCTTGGCAAG
ACCTGGGAGAAACTTGTACTGGCCGCCCGCGTCATCGTAGCTATCGAGAA
CCCGAAAGACGTCATTGCCATCTCTGCTCGACCTTACGGCCAGCGCGCTG
TGCTCAAATTTGCGCAGTACACAGGTGCTCAGTCCATTGCTGGGCGATTC
ACGCCCGGGACCTTCACAAACCAGATCACGAAGCAATTTCGCGAGCCGCG
TCTGTTGGTGGTGACTGACCCCCGAACCGACTCCCAGTCGGTGCATGAGG
CCTCGTATGTGAACGTGCCCGTTATTGCCTTTGCCGACTCGGACTCCCCG
TTGCAATACGTGGATATCGCCATTCCGGGGAACAACAAGGGTCGTCTCTC
GATTGGCCTGTTGTACTGGCTTTTGGCGCGGGAGGTGCTGCGTCTGCGAG
GCACCATCAGCAGGACGGAAGAGTGGGATGTGCCCGTGGATCTGTTTTTC
TACCGCGAGCCCGATGAGATCGAGAAAGAAGAGGACAAGCCCGCAGCCTT
CGCCACCGAGCCGGAGATGCCTGACGCGGCACCCGTCGCCCCTGGTGTGG
ATGACTTTGGCGTGGTGGGCGCGGGTGTCGTGCCTTCCTACGGTGAGCCT
GTATCGGCCTCGTGGGATGGGGCAGCGGCGCCTGTGGATCAGGCCGGGGC
ATCTTCTTGGGAGCAACCGACAGAGAGCGGATGGACAAATTGAGGGGGGA
GGGAGGAAAGGGTGGCGATTGAGCCGACATGGCTGGTGGTGCCGCTGCGG
TGATGGCTGGTCGAGGTCGAGGGGGGAAGGAGTGTGGGGAGGAGGGTATG
ACCTTTGAAAAGGGGACGGAGAATAGGATAGAGAAGGGGAAGAGGTGGTG
CGTCAAGCGACAGAGAAAAGGCGGTGAAGTCTGACCCTTGAAATTTCGAT
CGCATGGTCAAGAAATGGAGAGGAGGATAATGAAGGGGAAAAAGGAAAAG
ACAAGAACCCTTTTCGAAAACCCGCCGTTTTTTGTTCTCCTGAACGTAAT
TTATTTTATTTTTTTGTGCTCTATGTCGATGAAGGCGTTGTGCGGCTGGG
TGTCCAGATATGCTCTCTAAACGTCGAGACTACCGGAAAGACTGAAGCTG
GACGTGAAAGAGAGAGATGAAAAAACTCAAAGCAAAAGATGGGATCTTTT
TGGTTTTGTGATGTGTGCGTCCTTGTGTATGCAGGCTAGCTGACTTAAGG
AATTCGGTCTTCGACTTTTAGTTGTTGGTGGTGGTGTTGTCCTCTTACTG
TGCATTGCTCTCACTCTCTTTCTTTCCCCCTCATTCTCGGTGTGACTCTC
TCTCCCTCGCTGCGTCACTCTCTCTCCTTTTCTGTTGAATTATCTGTCTT
CCTCTTCTCCGTCTCTCTTTTGAGACACCGTCATTCTCTGATGCTCGTAT
CCTCCCTCTCCCTCCTTCCCTTTCTTCCTGCCTTCCTCGGTGTCTGTCAT
CTATTCACTAGCGAACGCGACTAGATTCTGAAGCTATTTTTTCCCAATGC
ACCTCCTCTGGATGGGCTCTTCTCTTACTCTCTATATCTGTGAGTCTGTG
TGTCTGCGTGCGCGTCGATCAAAGAAAGATGCTTCACACATGCCTTCATT
CCTTCCCCAGCGGCCTCGTCCTCGTCCTCGTCCTCGTCCTCTCGGGCTAT
GTTATTCTTGGTTGCTGCTTCCCGTCAAGCCCTACTACCATCTCTCCCTC
CCTAGCTTCTTGCCTGCCTTCATGTGCGCACCTAAATCTGTATTCGTATC
TACTGAATGAACCATGAAGACTCACATATAATGAATTACTGGCTTGGTGA
AAAGATAGTTGACGCCACATGCCGCTATCCCTGCCGTCATTAATTCCAGA
AACGCCCGAAGAGAAGGGGGCCATGAAGGAGGCAGTGATGAGTCAGCACG
AACCATGCGCAACATTTTGGCGATTGAATCAAAGAGGTGCACACTCGCAA
ACAGACACCGCCACATCTCTTCATTCTCCTCCTCGCCCGCTCAGAGGCAA
ATGCTGCATCCTCCCCATCCTCATCCTACCCCTCCCTCATCCTAC
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Coding sequence (CDS) from alignment at scaffold_21:429265..431709-

>mRNA_7827 ID=mRNA_7827|Name=jgi.p|Nanoce1779_2|600183|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_21:429265..431709- (Nannochloropsis oceanica)
ATGCACAAGCTGGTGTATGCCTCTGTGCACATCGGCACCAAGAATTCTGA
CAAGCTGATGGAGCCGTACATCTGGCGTCGACGTGTGGACAACACCTACG
TCCTCAACCTTGGCAAGACCTGGGAGAAACTTGTACTGGCCGCCCGCGTC
ATCGTAGCTATCGAGAACCCGAAAGACGTCATTGCCATCTCTGCTCGACC
TTACGGCCAGCGCGCTGTGCTCAAATTTGCGCAGTACACAGGTGCTCAGT
CCATTGCTGGGCGATTCACGCCCGGGACCTTCACAAACCAGATCACGAAG
CAATTTCGCGAGCCGCGTCTGTTGGTGGTGACTGACCCCCGAACCGACTC
CCAGTCGGTGCATGAGGCCTCGTATGTGAACGTGCCCGTTATTGCCTTTG
CCGACTCGGACTCCCCGTTGCAATACGTGGATATCGCCATTCCGGGGAAC
AACAAGGGTCGTCTCTCGATTGGCCTGTTGTACTGGCTTTTGGCGCGGGA
GGTGCTGCGTCTGCGAGGCACCATCAGCAGGACGGAAGAGTGGGATGTGC
CCGTGGATCTGTTTTTCTACCGCGAGCCCGATGAGATCGAGAAAGAAGAG
GACAAGCCCGCAGCCTTCGCCACCGAGCCGGAGATGCCTGACGCGGCACC
CGTCGCCCCTGGTGTGGATGACTTTGGCGTGGTGGGCGCGGGTGTCGTGC
CTTCCTACGGTGAGCCTGTATCGGCCTCGTGGGATGGGGCAGCGGCGCCT
GTGGATCAGGCCGGGGCATCTTCTTGGGAGCAACCGACAGAGAGCGGATG
GACAAATTGA
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Synonyms
Publications