jgi.p|Nanoce1779_2|600179, mRNA_7825 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600179
Unique Name	mRNA_7825
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2257
Alignment location	scaffold_21:424444..426700 -

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Properties


Property Name	Value
TranscriptId	600265
Track	FilteredModels2
ProteinId	600179

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:424444..426700 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600179	gene_7825	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600179	mRNA_7825-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7825	CDS_7825	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:424444..426700-
coding sequence from alignment at scaffold_21:424444..426700-

mRNA sequence

>mRNA_7825 ID=mRNA_7825|Name=jgi.p|Nanoce1779_2|600179|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp
ACAGATCGAAAATTGCGTCCCAATCCATACAGCAACGACGCTGACATTCT
CCGTGGCGCCCTCGCGGCCCTTGGGCCTCCCCCCACCACGGTTAGCAGCA
GCAGGGCTTCTATTCGTCGCCGTCGCACAGCTTAAGCAGGATTAGCGGCA
GCAGCGACAACAATACGTCTTCGCTCTAAGCAGAAAGACAAAGCCGCCTG
TGAGTTACCAAGGCAGTCACCAGCGACAGCATCGCCAAGACAACCATGAA
GCGTGAAGTCAAAGTCCGCACAGTCGACATCTGGAAGGCTCTTCCCGTCG
TCCGCTCTTTGGAAGATGCGGAGCAACGCGGCAATAACGGCGACGATGAT
GACGACCTTATGCAGCAGCAAGCCCCAGCACCCCGAATTCGTGGACTCGA
GCGCTCGTCCAGCACTAGCAATAATGGAACCCCTGCTCCTGCCAGTCTCG
AAAGTGCCAAAAGCATTACGGCAACAGGCCTGGCTCAGCCGAAAGCCAAA
GAGATCCCCGTCCCGCAAATAGATACTTCGGCGGAATATGATAGTGTCAT
GGTGGAGGCTTCATTTAAGCTGCCGGAGTCGTATATCCGCACGAAGAAAC
TCCCACTCCTCCCCCCCGGGGTCGAGATTGAGGGATTAGAGTACAATTTA
GAGTTTGAGGACGAAGAGTGGTTGAGTGGGCATAAGGTCATTGGCCCGAG
CGGTGAGATGGCCGGGGCGCTTGATGCGGATAGGATGGAGAAGATGATGG
ATGAGCTTGAGAAGGTTACAGGGGCAGGCGAGACCACATCTCTTGCAGAC
GCGGAGTCCGTGCTGGAAGCACGGTTGGGCATGCAACCAATCGGGTCAAA
CAAGACGGTGATTGCGGAGGTGTGGGGGTACTGGGCGGCGAAACGCGCGA
GATTAAAAAAGCCATTACTGCGACGGTTTTGGCCTATTACGTCCATTAAT
GACTCAAACCCCCATTTGGTCTTTAGGCCCCGTGAGAAGGAAAAGTATAA
GCTGCGGAAGCATCGAAAGAACGATGGGGAGGCTTATCGACGCTTGCAGT
TGTTAAGGAGGGATTTCGGGCAGGTGCAACATCTGCTTAATATGGTCAGA
AAACGGGAGCAAGTCAAGCTGGCCAGGCTCAAGCTGCAGGAGGAGCAGTA
CCTGCAGACTATTGCTGAGATGTGCGGGCAGGCACGCAAACCGAAGATAC
CGAAGGAATCGATGTATACAGGGAGGGAGGGTGGAGGGGGAGGGGACTTC
AAGCTCAAGATTCGCTTGCCCTCCATGGGATTGGTCATAGGGGAGGACGG
ACGACCGAGGAAGAAGCGAGTGAGAGACGAGATGGAGGGGATGGAAGCTG
GAGGAGGAGGAGGGCGACGAGGACAGGTCGCTGTGGAACTGAACCCTGAG
CAGGAGCGGTTGCGGAAGTCGGTCGCGTGTGGGTTCAGGGAGAGGGAGGC
TGCGATGGCCACGCCTGATTACTTGCCTTCGTTTATGGAAGAGTTCAAAT
TTCGGCATCAGGGGCTTGAAACGCTTCCGCCGGCGCATCGGACGAACAAA
TCATTCTTGCCGTTTGCAGATGAGGCGTCCACGACGTATACCTGGCGGGC
ATCGAGGCGGGGGCAGGGAGGAAAGATTGGGCACGTACGCAGTGGGTTGG
TGGCGGCGCCGCGCTGTCCTCCGATTGATTATGACGGGGAGGAAGACACG
AGTGTACGGTATCGGTGTCGGGCGCGCTTGGCAAGAGGGGGTAGGATTGT
GTTTGACCGAGTTCCGATTGCCCCGGGCTTGCCCGCGCCCTTGACATTGG
CGGTTGGAGAAGGAGTAGAGGGAGGAGCCGCAGCAGCGGCGAGCGAGGAG
GAGAATCCAGCGGCGGTCGATTCGACAAGGATGTCATTAGGCTCTTCGGT
ATTGTTGAGTGCAGGGACCAAAATCCCGCATCTGGATAAATATCCGACAG
TGGACTTGGTGGCTGGCTCGCTATTCCAATACCCCAAACGTTATCGAGAA
ATCAGCCAGCTGCTTGATGACAACGAGGAGGAGGTGTTGGAGATAAATCC
CGCAGCGCCTTCGGATCCGGACTCGTTTTTGGCCCTGCCGCCGCGACCAA
AGCCTCCTGAGACGGATGCGGTGGTAACTTTGAGATTTGCTTTACCGGTC
TAAGCAAAGGGACTGAAGTAAGAGGTGATGGAGGAGGAGATAGTATCAGA
GGGAACGGTGCATTTGAAACTATCTCGTAAGAAAAAGCAACACATGACTC
CTAGAAA

protein sequence of jgi.p|Nanoce1779_2|600179

>mRNA_7825-protein ID=mRNA_7825-protein|Name=jgi.p|Nanoce1779_2|600179|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MKREVKVRTVDIWKALPVVRSLEDAEQRGNNGDDDDDLMQQQAPAPRIRG
LERSSSTSNNGTPAPASLESAKSITATGLAQPKAKEIPVPQIDTSAEYDS
VMVEASFKLPESYIRTKKLPLLPPGVEIEGLEYNLEFEDEEWLSGHKVIG
PSGEMAGALDADRMEKMMDELEKVTGAGETTSLADAESVLEARLGMQPIG
SNKTVIAEVWGYWAAKRARLKKPLLRRFWPITSINDSNPHLVFRPREKEK
YKLRKHRKNDGEAYRRLQLLRRDFGQVQHLLNMVRKREQVKLARLKLQEE
QYLQTIAEMCGQARKPKIPKESMYTGREGGGGGDFKLKIRLPSMGLVIGE
DGRPRKKRVRDEMEGMEAGGGGGRRGQVAVELNPEQERLRKSVACGFRER
EAAMATPDYLPSFMEEFKFRHQGLETLPPAHRTNKSFLPFADEASTTYTW
RASRRGQGGKIGHVRSGLVAAPRCPPIDYDGEEDTSVRYRCRARLARGGR
IVFDRVPIAPGLPAPLTLAVGEGVEGGAAAAASEEENPAAVDSTRMSLGS
SVLLSAGTKIPHLDKYPTVDLVAGSLFQYPKRYREISQLLDDNEEEVLEI
NPAAPSDPDSFLALPPRPKPPETDAVVTLRFALPV*

mRNA from alignment at scaffold_21:424444..426700-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7825 ID=mRNA_7825|Name=jgi.p|Nanoce1779_2|600179|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at scaffold_21:424444..426700- (Nannochloropsis oceanica)
ACAGATCGAAAATTGCGTCCCAATCCATACAGCAACGACGCTGACATTCT
CCGTGGCGCCCTCGCGGCCCTTGGGCCTCCCCCCACCACGGTTAGCAGCA
GCAGGGCTTCTATTCGTCGCCGTCGCACAGCTTAAGCAGGATTAGCGGCA
GCAGCGACAACAATACGTCTTCGCTCTAAGCAGAAAGACAAAGCCGCCTG
TGAGTTACCAAGGCAGTCACCAGCGACAGCATCGCCAAGACAACCATGAA
GCGTGAAGTCAAAGTCCGCACAGTCGACATCTGGAAGGCTCTTCCCGTCG
TCCGCTCTTTGGAAGATGCGGAGCAACGCGGCAATAACGGCGACGATGAT
GACGACCTTATGCAGCAGCAAGCCCCAGCACCCCGAATTCGTGGACTCGA
GCGCTCGTCCAGCACTAGCAATAATGGAACCCCTGCTCCTGCCAGTCTCG
AAAGTGCCAAAAGCATTACGGCAACAGGCCTGGCTCAGCCGAAAGCCAAA
GAGATCCCCGTCCCGCAAATAGATACTTCGGCGGAATATGATAGTGTCAT
GGTGGAGGCTTCATTTAAGCTGCCGGAGTCGTATATCCGCACGAAGAAAC
TCCCACTCCTCCCCCCCGGGGTCGAGATTGAGGGATTAGAGTACAATTTA
GAGTTTGAGGACGAAGAGTGGTTGAGTGGGCATAAGGTCATTGGCCCGAG
CGGTGAGATGGCCGGGGCGCTTGATGCGGATAGGATGGAGAAGATGATGG
ATGAGCTTGAGAAGGTTACAGGGGCAGGCGAGACCACATCTCTTGCAGAC
GCGGAGTCCGTGCTGGAAGCACGGTTGGGCATGCAACCAATCGGGTCAAA
CAAGACGGTGATTGCGGAGGTGTGGGGGTACTGGGCGGCGAAACGCGCGA
GATTAAAAAAGCCATTACTGCGACGGTTTTGGCCTATTACGTCCATTAAT
GACTCAAACCCCCATTTGGTCTTTAGGCCCCGTGAGAAGGAAAAGTATAA
GCTGCGGAAGCATCGAAAGAACGATGGGGAGGCTTATCGACGCTTGCAGT
TGTTAAGGAGGGATTTCGGGCAGGTGCAACATCTGCTTAATATGGTCAGA
AAACGGGAGCAAGTCAAGCTGGCCAGGCTCAAGCTGCAGGAGGAGCAGTA
CCTGCAGACTATTGCTGAGATGTGCGGGCAGGCACGCAAACCGAAGATAC
CGAAGGAATCGATGTATACAGGGAGGGAGGGTGGAGGGGGAGGGGACTTC
AAGCTCAAGATTCGCTTGCCCTCCATGGGATTGGTCATAGGGGAGGACGG
ACGACCGAGGAAGAAGCGAGTGAGAGACGAGATGGAGGGGATGGAAGCTG
GAGGAGGAGGAGGGCGACGAGGACAGGTCGCTGTGGAACTGAACCCTGAG
CAGGAGCGGTTGCGGAAGTCGGTCGCGTGTGGGTTCAGGGAGAGGGAGGC
TGCGATGGCCACGCCTGATTACTTGCCTTCGTTTATGGAAGAGTTCAAAT
TTCGGCATCAGGGGCTTGAAACGCTTCCGCCGGCGCATCGGACGAACAAA
TCATTCTTGCCGTTTGCAGATGAGGCGTCCACGACGTATACCTGGCGGGC
ATCGAGGCGGGGGCAGGGAGGAAAGATTGGGCACGTACGCAGTGGGTTGG
TGGCGGCGCCGCGCTGTCCTCCGATTGATTATGACGGGGAGGAAGACACG
AGTGTACGGTATCGGTGTCGGGCGCGCTTGGCAAGAGGGGGTAGGATTGT
GTTTGACCGAGTTCCGATTGCCCCGGGCTTGCCCGCGCCCTTGACATTGG
CGGTTGGAGAAGGAGTAGAGGGAGGAGCCGCAGCAGCGGCGAGCGAGGAG
GAGAATCCAGCGGCGGTCGATTCGACAAGGATGTCATTAGGCTCTTCGGT
ATTGTTGAGTGCAGGGACCAAAATCCCGCATCTGGATAAATATCCGACAG
TGGACTTGGTGGCTGGCTCGCTATTCCAATACCCCAAACGTTATCGAGAA
ATCAGCCAGCTGCTTGATGACAACGAGGAGGAGGTGTTGGAGATAAATCC
CGCAGCGCCTTCGGATCCGGACTCGTTTTTGGCCCTGCCGCCGCGACCAA
AGCCTCCTGAGACGGATGCGGTGGTAACTTTGAGATTTGCTTTACCGGTC
TAAGCAAAGGGACTGAAGTAAGAGGTGATGGAGGAGGAGATAGTATCAGA
GGGAACGGTGCATTTGAAACTATCTCGTAAGAAAAAGCAACACATGACTC
CTAGAAA

Coding sequence (CDS) from alignment at scaffold_21:424444..426700-

>mRNA_7825 ID=mRNA_7825|Name=jgi.p|Nanoce1779_2|600179|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_21:424444..426700- (Nannochloropsis oceanica)
ATGAAGCGTGAAGTCAAAGTCCGCACAGTCGACATCTGGAAGGCTCTTCC
CGTCGTCCGCTCTTTGGAAGATGCGGAGCAACGCGGCAATAACGGCGACG
ATGATGACGACCTTATGCAGCAGCAAGCCCCAGCACCCCGAATTCGTGGA
CTCGAGCGCTCGTCCAGCACTAGCAATAATGGAACCCCTGCTCCTGCCAG
TCTCGAAAGTGCCAAAAGCATTACGGCAACAGGCCTGGCTCAGCCGAAAG
CCAAAGAGATCCCCGTCCCGCAAATAGATACTTCGGCGGAATATGATAGT
GTCATGGTGGAGGCTTCATTTAAGCTGCCGGAGTCGTATATCCGCACGAA
GAAACTCCCACTCCTCCCCCCCGGGGTCGAGATTGAGGGATTAGAGTACA
ATTTAGAGTTTGAGGACGAAGAGTGGTTGAGTGGGCATAAGGTCATTGGC
CCGAGCGGTGAGATGGCCGGGGCGCTTGATGCGGATAGGATGGAGAAGAT
GATGGATGAGCTTGAGAAGGTTACAGGGGCAGGCGAGACCACATCTCTTG
CAGACGCGGAGTCCGTGCTGGAAGCACGGTTGGGCATGCAACCAATCGGG
TCAAACAAGACGGTGATTGCGGAGGTGTGGGGGTACTGGGCGGCGAAACG
CGCGAGATTAAAAAAGCCATTACTGCGACGGTTTTGGCCTATTACGTCCA
TTAATGACTCAAACCCCCATTTGGTCTTTAGGCCCCGTGAGAAGGAAAAG
TATAAGCTGCGGAAGCATCGAAAGAACGATGGGGAGGCTTATCGACGCTT
GCAGTTGTTAAGGAGGGATTTCGGGCAGGTGCAACATCTGCTTAATATGG
TCAGAAAACGGGAGCAAGTCAAGCTGGCCAGGCTCAAGCTGCAGGAGGAG
CAGTACCTGCAGACTATTGCTGAGATGTGCGGGCAGGCACGCAAACCGAA
GATACCGAAGGAATCGATGTATACAGGGAGGGAGGGTGGAGGGGGAGGGG
ACTTCAAGCTCAAGATTCGCTTGCCCTCCATGGGATTGGTCATAGGGGAG
GACGGACGACCGAGGAAGAAGCGAGTGAGAGACGAGATGGAGGGGATGGA
AGCTGGAGGAGGAGGAGGGCGACGAGGACAGGTCGCTGTGGAACTGAACC
CTGAGCAGGAGCGGTTGCGGAAGTCGGTCGCGTGTGGGTTCAGGGAGAGG
GAGGCTGCGATGGCCACGCCTGATTACTTGCCTTCGTTTATGGAAGAGTT
CAAATTTCGGCATCAGGGGCTTGAAACGCTTCCGCCGGCGCATCGGACGA
ACAAATCATTCTTGCCGTTTGCAGATGAGGCGTCCACGACGTATACCTGG
CGGGCATCGAGGCGGGGGCAGGGAGGAAAGATTGGGCACGTACGCAGTGG
GTTGGTGGCGGCGCCGCGCTGTCCTCCGATTGATTATGACGGGGAGGAAG
ACACGAGTGTACGGTATCGGTGTCGGGCGCGCTTGGCAAGAGGGGGTAGG
ATTGTGTTTGACCGAGTTCCGATTGCCCCGGGCTTGCCCGCGCCCTTGAC
ATTGGCGGTTGGAGAAGGAGTAGAGGGAGGAGCCGCAGCAGCGGCGAGCG
AGGAGGAGAATCCAGCGGCGGTCGATTCGACAAGGATGTCATTAGGCTCT
TCGGTATTGTTGAGTGCAGGGACCAAAATCCCGCATCTGGATAAATATCC
GACAGTGGACTTGGTGGCTGGCTCGCTATTCCAATACCCCAAACGTTATC
GAGAAATCAGCCAGCTGCTTGATGACAACGAGGAGGAGGTGTTGGAGATA
AATCCCGCAGCGCCTTCGGATCCGGACTCGTTTTTGGCCCTGCCGCCGCG
ACCAAAGCCTCCTGAGACGGATGCGGTGGTAACTTTGAGATTTGCTTTAC
CGGTCTAA

Synonyms

Publications