jgi.p|Nanoce1779_2|600178, mRNA_7823 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600178
Unique NamemRNA_7823
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length689
Alignment locationscaffold_21:422980..423924 +

Link to JBrowse

Properties
Property NameValue
TranscriptId600264
TrackFilteredModels2
ProteinId600178
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:422980..423924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600178gene_7823Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600178mRNA_7823-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7823CDS_7823Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7823 ID=mRNA_7823|Name=jgi.p|Nanoce1779_2|600178|organism=Nannochloropsis oceanica|type=mRNA|length=689bp
ACAGTGTTAGTCCCCATGGCCACATCTTTGTCTGCCAAACGCCTCCGGAA
GGAGCTCGTGGCGCTACAGCGGGACCCGGTAGAGAACATAACAGCCCGGC
CCTTAGAAAGCAACATCCTTATTTGGCACTACGTTCTAAAGGGGGCCAGG
GGCAGCCCGTATGAAGGCGGCTACTACCACGGCAAGCTCAAGTTTCCGCC
TGAATACCCCCTCAAGCCTCCCTCCATTCTGATGCTCACCCCGTCCGGTC
GCTTCAAGCCTAACACACGCCTCTGCCTCTCAATGTATGCGATTTGACAA
ACTCTTTTTTCCCCACATTTTTCTGGCTTTACCGTTTTCCCGATGTCATA
ATTGTGCCTACCGCGTATTTAAGTCCACCCTCCTGCTCCTGCGCTTCCTC
CCTCCCTCCCTCCCTCTTTCTCTACCTTCCTAGGTCCGACTTCCATCCCG
AGACATGGAACCCTATGTGGTCTGTCAGTACCATTCTCATGGGTCTGCAG
GCCTTCATGCTTGACTCCGCGCCGACCCTCGGGAGCATCGAAACCAGCGC
CGCCCAAAAACGAAAATTGGCGCAAGGGACTATGGCGTTTAATCTGACAA
ATTCGGTATTTGTGCAGTTGTTTCCGGAATTCGTAGAGGAAGAAGAGGAG
CGGAGGAAGAAGAGGGAAGAGAATGGAGAGGGAGGTGCG
back to top

protein sequence of jgi.p|Nanoce1779_2|600178

>mRNA_7823-protein ID=mRNA_7823-protein|Name=jgi.p|Nanoce1779_2|600178|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYE
GGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMYAI*
back to top

mRNA from alignment at scaffold_21:422980..423924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7823 ID=mRNA_7823|Name=jgi.p|Nanoce1779_2|600178|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at scaffold_21:422980..423924+ (Nannochloropsis oceanica)
ACAGTGTTAGTCCCCATGGCCACATCTTTGTCTGCCAAACGCCTCCGGAA
GGAGCTCGTGGCGCTACAGCGGGACCCGGTAGAGAACATAACAGCCCGGC
CCTTAGAAAGGTTAGTCGCTTGGTGTGTTTTAATCTCTGTGTTTTGCTGA
CTCCACGCATGTATGGACGACTTGTATGGGCGAGCGGGCATGCGTATTTT
GGTGGATATATATATACGTTAAGTGTGGCGCTCAAACCCTCGTAGCAGCG
CGCAGACAAAGTAGCAGCATCGCTATACGGCACCGTTGAACAAGAGCCTG
TCTCTCTAATACAATAACAATGCTTATGCCTTCCCTGTGGTCCTTTCCTC
CTCCTGCTCTCAACAGCAACATCCTTATTTGGCACTACGTTCTAAAGGGG
GCCAGGGGCAGCCCGTATGAAGGCGGCTACTACCACGGCAAGCTCAAGTT
TCCGCCTGAATACCCCCTCAAGCCTCCCTCCATTCTGATGCTCACCCCGT
CCGGTCGCTTCAAGCCTAACACACGCCTCTGCCTCTCAATGTATGCGATT
TGACAAACTCTTTTTTCCCCACATTTTTCTGGCTTTACCGTTTTCCCGAT
GTCATAATTGTGCCTACCGCGTATTTAAGTCCACCCTCCTGCTCCTGCGC
TTCCTCCCTCCCTCCCTCCCTCTTTCTCTACCTTCCTAGGTCCGACTTCC
ATCCCGAGACATGGAACCCTATGTGGTCTGTCAGTACCATTCTCATGGGT
CTGCAGGCCTTCATGCTTGACTCCGCGCCGACCCTCGGGAGCATCGAAAC
CAGCGCCGCCCAAAAACGAAAATTGGCGCAAGGGACTATGGCGTTTAATC
TGACAAATTCGGTATTTGTGCAGTTGTTTCCGGAATTCGTAGAGGAAGAA
GAGGAGCGGAGGAAGAAGAGGGAAGAGAATGGAGAGGGAGGTGCG
back to top

Coding sequence (CDS) from alignment at scaffold_21:422980..423924+

>mRNA_7823 ID=mRNA_7823|Name=jgi.p|Nanoce1779_2|600178|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_21:422980..423924+ (Nannochloropsis oceanica)
ATGGCCACATCTTTGTCTGCCAAACGCCTCCGGAAGGAGCTCGTGGCGCT
ACAGCGGGACCCGGTAGAGAACATAACAGCCCGGCCCTTAGAAAGCAACA
TCCTTATTTGGCACTACGTTCTAAAGGGGGCCAGGGGCAGCCCGTATGAA
GGCGGCTACTACCACGGCAAGCTCAAGTTTCCGCCTGAATACCCCCTCAA
GCCTCCCTCCATTCTGATGCTCACCCCGTCCGGTCGCTTCAAGCCTAACA
CACGCCTCTGCCTCTCAATGTATGCGATTTGAATGGCCACATCTTTGTCT
GCCAAACGCCTCCGGAAGGAGCTCGTGGCGCTACAGCGGGACCCGGTAGA
GAACATAACAGCCCGGCCCTTAGAAAGCAACATCCTTATTTGGCACTACG
TTCTAAAGGGGGCCAGGGGCAGCCCGTATGAAGGCGGCTACTACCACGGC
AAGCTCAAGTTTCCGCCTGAATACCCCCTCAAGCCTCCCTCCATTCTGAT
GCTCACCCCGTCCGGTCGCTTCAAGCCTAACACACGCCTCTGCCTCTCAA
TGTATGCGATTTGA
back to top
Synonyms
Publications