jgi.p|Nanoce1779_2|170012, mRNA_7821 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|170012
Unique NamemRNA_7821
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1956
Alignment locationscaffold_21:416061..418016 -

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Properties
Property NameValue
TranscriptId170098
TrackFilteredModels2
ProteinId170012
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:416061..418016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170012gene_7821Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170012mRNA_7821-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7821CDS_7821Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7821 ID=mRNA_7821|Name=jgi.p|Nanoce1779_2|170012|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp
CGTCGACTGAGACCGCCTCAACATCTTTTGCACCTCATCAATATCAAATT
GGCAATTCTAGCATTAGTATGTCATGGCTTTGCCCATAGGTCTATCATGC
CCGGTTGTCCATTAATATTTTTGTCCCACATACACCCAAAAGCCCGCTCG
TCTGGCTGCGCGAACAGGCCCATCAACCCCAACCTGAATGTTTTTTTCCT
TCTTCCCATCGTCCGCCACGGCAGCCGATCCTTTGCCGAGCTCGTCCCCA
CTGCGTGTTGGAAGAGCATTGACACGTATAGAAGCCCCTGCCTTGTCGGC
TGCCACGGCGTACGACTCTTTTTATGGCAGCAATCTTACCCAGAAGCTAC
GGGACAAATTTAAGCTAGTGGACAAACCGATTGTCTTCCACTCTAGAATC
TCGTCGTCAGGTTATGGCCAGCAACAAAAAATATCACATTCAAAAGCAAA
GAAATATGCGAACATGACTGCACCACCTTTGCCACTTATCCTGCCGCGGT
ATCCGATGGAAGACGAAGATGGGCCGCCAACCGTGGCCTACTGGAGCCCT
CGAGCATGCGACATTCCTGGTCCCTCTTCAGCAGCACATGTGACGGCCTC
GCCTCTCCTAGACATGGCTTATAGTTATAAGGGTGATTTATTGGCCCTCG
CAGCCATGGACGGCACGGTTCAAGTTTTTCCCCTTGCCAAGTCTCGTCGC
CGCCGACCCCCTACTGTTTTCTCCGCATCAACTGCTCCTGTGCGTTCCGT
TTCCCTCAGCCACAGCCAAGAGCTGGTGTTGGCCTCTTCGGACGATGGGA
TAGCCAGTCTTTTTTACATGGGGGAAATTTGTAATCGCAAAAATGCGAGC
ATGAGCCGTCGTGTCTCTCCAGTGGTCCGCATTGACCCTTCCTTTTCATC
TCCTCATATGTCGAAAAAGCAAAGCGGAGGTTGTCGCAACGACAGTATCG
GTGGCAGCTCCAGTTCCTTCACTTCGATATCAACGGTATCAAATACAGCC
CCGTCTCCTCCCGCCGTCACCGCTGTTTCATTCTTCTATCTGGATAGATA
CATACTCCTCGCCTCACAGAATAAGCTCTCCCTGCATACCTACCACATTG
CAATACCCGCCAAAGACGCCTTGATCCGTCATCACAGCCGCTCCCTCTCC
TCCTCGTCTTCTTCAACTAGTCCTGCTGCTAATGCAACTCACACATTCCA
TGTGTGGGTACACGATCACGCCCACCAATTAACTGCTGTTGCTTGTCTCA
ACAGCACCCTCTCCCCTCTCATCCTCACTGCCTGCTCCGACCGCTCCTTC
TCCCTCCTCGACGCCACCCATGGAAGCTTCTTGCGTACATTTTTTGACGC
GCATGCCCGTTCCATCCACTCTCTAAGCGTGCCAAACTCCTCTCAATTCG
TCGCGTCTCCCTCCCTTCCTCCATCCCACCTGGACGTGTTTGCGAGTGCT
GCTGCTGATAGCACGGTATCACTTTGGGACTTGAGAGCAGGAGCTGCCAA
GATTGCTTTTTTCAATGATCATATCAATCGACGAGAGAAGATTGGAGTCG
CCTTTTCACCTTGTGTCAGATTTTTGGCCGTTGGGAGTGAGGATGGTGTG
GCTTACGTATATGACTTGAGGAAGGGGAGGGAGACGGTATATACCACTAG
CACTAGCAGCAGCAGCAACACCACTAACAGCAGCAATAGCAGCAGCACCA
GCAGCGAGATGATAAATGAAGGCAAGGGAGTTGACAATGAGGAGGATGGA
AGGGAGAGGCGGTGCCAAGGAAGGAAGGGAGGAAGGGCGGGACCGACGCC
TCATGGCAACGTTGTTTCGTGCGTGGCTTTCAACCCGTTGCATCCCGAGC
TGGTGACTGGCTCTTACGATGGAGGGGTACGTTTTCACGATCGGGGTGAG
TGATTGGTTAATGAATTTGTTTGTGAAGTGGCTGGAAGGAAACAAGTCGT
TCTGGC
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protein sequence of jgi.p|Nanoce1779_2|170012

>mRNA_7821-protein ID=mRNA_7821-protein|Name=jgi.p|Nanoce1779_2|170012|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MFFSFFPSSATAADPLPSSSPLRVGRALTRIEAPALSAATAYDSFYGSNL
TQKLRDKFKLVDKPIVFHSRISSSGYGQQQKISHSKAKKYANMTAPPLPL
ILPRYPMEDEDGPPTVAYWSPRACDIPGPSSAAHVTASPLLDMAYSYKGD
LLALAAMDGTVQVFPLAKSRRRRPPTVFSASTAPVRSVSLSHSQELVLAS
SDDGIASLFYMGEICNRKNASMSRRVSPVVRIDPSFSSPHMSKKQSGGCR
NDSIGGSSSSFTSISTVSNTAPSPPAVTAVSFFYLDRYILLASQNKLSLH
TYHIAIPAKDALIRHHSRSLSSSSSSTSPAANATHTFHVWVHDHAHQLTA
VACLNSTLSPLILTACSDRSFSLLDATHGSFLRTFFDAHARSIHSLSVPN
SSQFVASPSLPPSHLDVFASAAADSTVSLWDLRAGAAKIAFFNDHINRRE
KIGVAFSPCVRFLAVGSEDGVAYVYDLRKGRETVYTTSTSSSSNTTNSSN
SSSTSSEMINEGKGVDNEEDGRERRCQGRKGGRAGPTPHGNVVSCVAFNP
LHPELVTGSYDGGVRFHDRGE*
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mRNA from alignment at scaffold_21:416061..418016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7821 ID=mRNA_7821|Name=jgi.p|Nanoce1779_2|170012|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp|location=Sequence derived from alignment at scaffold_21:416061..418016- (Nannochloropsis oceanica)
CGTCGACTGAGACCGCCTCAACATCTTTTGCACCTCATCAATATCAAATT
GGCAATTCTAGCATTAGTATGTCATGGCTTTGCCCATAGGTCTATCATGC
CCGGTTGTCCATTAATATTTTTGTCCCACATACACCCAAAAGCCCGCTCG
TCTGGCTGCGCGAACAGGCCCATCAACCCCAACCTGAATGTTTTTTTCCT
TCTTCCCATCGTCCGCCACGGCAGCCGATCCTTTGCCGAGCTCGTCCCCA
CTGCGTGTTGGAAGAGCATTGACACGTATAGAAGCCCCTGCCTTGTCGGC
TGCCACGGCGTACGACTCTTTTTATGGCAGCAATCTTACCCAGAAGCTAC
GGGACAAATTTAAGCTAGTGGACAAACCGATTGTCTTCCACTCTAGAATC
TCGTCGTCAGGTTATGGCCAGCAACAAAAAATATCACATTCAAAAGCAAA
GAAATATGCGAACATGACTGCACCACCTTTGCCACTTATCCTGCCGCGGT
ATCCGATGGAAGACGAAGATGGGCCGCCAACCGTGGCCTACTGGAGCCCT
CGAGCATGCGACATTCCTGGTCCCTCTTCAGCAGCACATGTGACGGCCTC
GCCTCTCCTAGACATGGCTTATAGTTATAAGGGTGATTTATTGGCCCTCG
CAGCCATGGACGGCACGGTTCAAGTTTTTCCCCTTGCCAAGTCTCGTCGC
CGCCGACCCCCTACTGTTTTCTCCGCATCAACTGCTCCTGTGCGTTCCGT
TTCCCTCAGCCACAGCCAAGAGCTGGTGTTGGCCTCTTCGGACGATGGGA
TAGCCAGTCTTTTTTACATGGGGGAAATTTGTAATCGCAAAAATGCGAGC
ATGAGCCGTCGTGTCTCTCCAGTGGTCCGCATTGACCCTTCCTTTTCATC
TCCTCATATGTCGAAAAAGCAAAGCGGAGGTTGTCGCAACGACAGTATCG
GTGGCAGCTCCAGTTCCTTCACTTCGATATCAACGGTATCAAATACAGCC
CCGTCTCCTCCCGCCGTCACCGCTGTTTCATTCTTCTATCTGGATAGATA
CATACTCCTCGCCTCACAGAATAAGCTCTCCCTGCATACCTACCACATTG
CAATACCCGCCAAAGACGCCTTGATCCGTCATCACAGCCGCTCCCTCTCC
TCCTCGTCTTCTTCAACTAGTCCTGCTGCTAATGCAACTCACACATTCCA
TGTGTGGGTACACGATCACGCCCACCAATTAACTGCTGTTGCTTGTCTCA
ACAGCACCCTCTCCCCTCTCATCCTCACTGCCTGCTCCGACCGCTCCTTC
TCCCTCCTCGACGCCACCCATGGAAGCTTCTTGCGTACATTTTTTGACGC
GCATGCCCGTTCCATCCACTCTCTAAGCGTGCCAAACTCCTCTCAATTCG
TCGCGTCTCCCTCCCTTCCTCCATCCCACCTGGACGTGTTTGCGAGTGCT
GCTGCTGATAGCACGGTATCACTTTGGGACTTGAGAGCAGGAGCTGCCAA
GATTGCTTTTTTCAATGATCATATCAATCGACGAGAGAAGATTGGAGTCG
CCTTTTCACCTTGTGTCAGATTTTTGGCCGTTGGGAGTGAGGATGGTGTG
GCTTACGTATATGACTTGAGGAAGGGGAGGGAGACGGTATATACCACTAG
CACTAGCAGCAGCAGCAACACCACTAACAGCAGCAATAGCAGCAGCACCA
GCAGCGAGATGATAAATGAAGGCAAGGGAGTTGACAATGAGGAGGATGGA
AGGGAGAGGCGGTGCCAAGGAAGGAAGGGAGGAAGGGCGGGACCGACGCC
TCATGGCAACGTTGTTTCGTGCGTGGCTTTCAACCCGTTGCATCCCGAGC
TGGTGACTGGCTCTTACGATGGAGGGGTACGTTTTCACGATCGGGGTGAG
TGATTGGTTAATGAATTTGTTTGTGAAGTGGCTGGAAGGAAACAAGTCGT
TCTGGC
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Coding sequence (CDS) from alignment at scaffold_21:416061..418016-

>mRNA_7821 ID=mRNA_7821|Name=jgi.p|Nanoce1779_2|170012|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_21:416061..418016- (Nannochloropsis oceanica)
ATGTTTTTTTCCTTCTTCCCATCGTCCGCCACGGCAGCCGATCCTTTGCC
GAGCTCGTCCCCACTGCGTGTTGGAAGAGCATTGACACGTATAGAAGCCC
CTGCCTTGTCGGCTGCCACGGCGTACGACTCTTTTTATGGCAGCAATCTT
ACCCAGAAGCTACGGGACAAATTTAAGCTAGTGGACAAACCGATTGTCTT
CCACTCTAGAATCTCGTCGTCAGGTTATGGCCAGCAACAAAAAATATCAC
ATTCAAAAGCAAAGAAATATGCGAACATGACTGCACCACCTTTGCCACTT
ATCCTGCCGCGGTATCCGATGGAAGACGAAGATGGGCCGCCAACCGTGGC
CTACTGGAGCCCTCGAGCATGCGACATTCCTGGTCCCTCTTCAGCAGCAC
ATGTGACGGCCTCGCCTCTCCTAGACATGGCTTATAGTTATAAGGGTGAT
TTATTGGCCCTCGCAGCCATGGACGGCACGGTTCAAGTTTTTCCCCTTGC
CAAGTCTCGTCGCCGCCGACCCCCTACTGTTTTCTCCGCATCAACTGCTC
CTGTGCGTTCCGTTTCCCTCAGCCACAGCCAAGAGCTGGTGTTGGCCTCT
TCGGACGATGGGATAGCCAGTCTTTTTTACATGGGGGAAATTTGTAATCG
CAAAAATGCGAGCATGAGCCGTCGTGTCTCTCCAGTGGTCCGCATTGACC
CTTCCTTTTCATCTCCTCATATGTCGAAAAAGCAAAGCGGAGGTTGTCGC
AACGACAGTATCGGTGGCAGCTCCAGTTCCTTCACTTCGATATCAACGGT
ATCAAATACAGCCCCGTCTCCTCCCGCCGTCACCGCTGTTTCATTCTTCT
ATCTGGATAGATACATACTCCTCGCCTCACAGAATAAGCTCTCCCTGCAT
ACCTACCACATTGCAATACCCGCCAAAGACGCCTTGATCCGTCATCACAG
CCGCTCCCTCTCCTCCTCGTCTTCTTCAACTAGTCCTGCTGCTAATGCAA
CTCACACATTCCATGTGTGGGTACACGATCACGCCCACCAATTAACTGCT
GTTGCTTGTCTCAACAGCACCCTCTCCCCTCTCATCCTCACTGCCTGCTC
CGACCGCTCCTTCTCCCTCCTCGACGCCACCCATGGAAGCTTCTTGCGTA
CATTTTTTGACGCGCATGCCCGTTCCATCCACTCTCTAAGCGTGCCAAAC
TCCTCTCAATTCGTCGCGTCTCCCTCCCTTCCTCCATCCCACCTGGACGT
GTTTGCGAGTGCTGCTGCTGATAGCACGGTATCACTTTGGGACTTGAGAG
CAGGAGCTGCCAAGATTGCTTTTTTCAATGATCATATCAATCGACGAGAG
AAGATTGGAGTCGCCTTTTCACCTTGTGTCAGATTTTTGGCCGTTGGGAG
TGAGGATGGTGTGGCTTACGTATATGACTTGAGGAAGGGGAGGGAGACGG
TATATACCACTAGCACTAGCAGCAGCAGCAACACCACTAACAGCAGCAAT
AGCAGCAGCACCAGCAGCGAGATGATAAATGAAGGCAAGGGAGTTGACAA
TGAGGAGGATGGAAGGGAGAGGCGGTGCCAAGGAAGGAAGGGAGGAAGGG
CGGGACCGACGCCTCATGGCAACGTTGTTTCGTGCGTGGCTTTCAACCCG
TTGCATCCCGAGCTGGTGACTGGCTCTTACGATGGAGGGGTACGTTTTCA
CGATCGGGGTGAGTGA
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Synonyms
Publications