jgi.p|Nanoce1779_2|627209, mRNA_782 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627209
Unique Name	mRNA_782
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1683
Alignment location	scaffold_2:420785..422746 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627295
Track	FilteredModels2
ProteinId	627209

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:420785..422746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627209	gene_782	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627209	mRNA_782-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_782	CDS_782	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:420785..422746+
coding sequence from alignment at scaffold_2:420785..422746+

mRNA sequence

>mRNA_782 ID=mRNA_782|Name=jgi.p|Nanoce1779_2|627209|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
ACAGGCTAACACGGTGCATCACCACTACACACAAAATCTACACCACACCC
AGGGTCTCGTTCAATCAGAGATCATGGTGGTGGCGGTCTACACAAAGCGC
ACTCAGCAGGGCTCTAACACCTTTCCCGCCTCGGCTTCAGCTCCCGCTTC
CGCCGCCTCCCCAAGAGGCGGTACTAAGACCAGCGCCAAGGAAAAGCCGC
GGCCTCCTCCTTCTCGGGCGGCAGCTTTTATCCCACCTTTGCTCCAGCAG
GAGCCGCCTACCGGCGAGCCGTACCGGGAGCACGTCAAAATAATTCCCCC
TTCTAAGGAGCGCACAGCCCGCGTCATCAAGCAGGCCCACCACAAACGGT
TAAAGCAAGTCCGCGGGGCCGATCGTCAAATTGCTGCCGCCATCCGTGCC
CACTACCAGGAACGCCTCGAAAAAGGGAAGGCCCGAGTCATGGCCAAGGC
TTACGCAGTCTGGCAGGGAGAGATGAAAGAGAGAATACGTATACTGAGCA
CGCGATTGCAAAACTCTGTTGTGTCCATTGGTGCAGGGCATCGCCAGGCC
GAAGCAGCAGTCATGGAGAAGGAGCGACAAGCAGCGGCGGCAACGCAACA
GGCTCAGAAACGACGCGAGGAGGAATCTGTCCGCTTTGGTCGAGCACAAG
AGAGGGCGCGGGTGGGAGGCCGGCAACGGGCGGAGATGTCGCGGTCCTCG
TCCCAAGCCCGGCAGAGGGAAGAGAGTCGGAAAAACTTTATGATCAAGTC
TCGGTCGATGACGCAACTGAGGAGCAGCAGCAGCAGCAGCAGTGGCAGCA
TTTTGCCGAAAATGAGCCTGGCTGCCAGTACAGGGGCCGTTCAAACCAGC
AGTCCTTTTTTGGTGCGTGGCGCTGTGAGAGCAAGGAGGACATCGAGCGC
GGGAAGGCGTATGGGAATGGGAGGAGGGGTGGGAGGGAAGAAAGGGAAAA
TGGCGGATGAGTTGCTCGAGGCGTTGGCGTCGCTGGACCGAGATCGGAAG
ATGCAGAAGCAAGACGTCATATCTTCATTTGCATTGCAACCATCTCAGAA
AGCGAGTCGTAGAGGAGGAGGAGGGGGAGGAAGAGGAGGAGGAGGAGGAG
GAGGGGGGGAGTGGGTAAGGGGAGAAGAAGCACAGGCTGAAAAAGGGGTG
GAATCTTTATTAATGGGGCACGTTCCCTTGGCGGCATCGCACCCGCCGGC
ATCTCGAGCACCTCGAACAGCAGCAGAATCGTCAACAACAGCAGGACCTA
CACGTGTGCAACGTCCTCGTCCTGGTGGTGCTTCGCGGCAGATGCCACTC
GAAGAAGAGAAGGAAGAGGAGGAGGAGCAGGAGAAGGAAGACATACGAGG
AGTCACTGGGACAACGTGGCAAGACATGGAGGAGAAGGTAGCGCGAATTG
AGAAGCAGCGGGAGGTGGATGAGGAGGAAGAAGCGGAGGAGGAAGGGGAG
GGAGGGGCAGCTGAGTCATCTTCCGTCGCCTTGCTAGGACGCGGGCGACG
TTTCGGGCGAGGAGAGAAGCAAGAAGAGGAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGAGAGACGGGCGTATTTTCATCATTATCGTCCACAGCGGAG
CTTGAGCGAGAGATTGAAAGCATGAGAAAGAGCTTGGAGGAAGTTGCGCG
ATCGTTGCGTGGTCGGTCGATGTTTGATCCCAA

protein sequence of jgi.p|Nanoce1779_2|627209

>mRNA_782-protein ID=mRNA_782-protein|Name=jgi.p|Nanoce1779_2|627209|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MVVAVYTKRTQQGSNTFPASASAPASAASPRGGTKTSAKEKPRPPPSRAA
AFIPPLLQQEPPTGEPYREHVKIIPPSKERTARVIKQAHHKRLKQVRGAD
RQIAAAIRAHYQERLEKGKARVMAKAYAVWQGEMKERIRILSTRLQNSVV
SIGAGHRQAEAAVMEKERQAAAATQQAQKRREEESVRFGRAQERARVGGR
QRAEMSRSSSQARQREESRKNFMIKSRSMTQLRSSSSSSSGSILPKMSLA
ASTGAVQTSSPFLVRGAVRARRTSSAGRRMGMGGGVGGKKGKMADELLEA
LASLDRDRKMQKQDVISSFALQPSQKASRRGGGGGGRGGGGGGGGEWVRG
EEAQAEKGVESLLMGHVPLAASHPPASRAPRTAAESSTTAGPTRVQRPRP
GGASRQMPLEEEKEEEEEQEKEDIRGVTGTTWQDMEEKVARIEKQREVDE
EEEAEEEGEGGAAESSSVALLGRGRRFGRGEKQEEEEEEEEEEEEGETGV
FSSLSSTAELEREIESMRKSLEEVARSLRGRSMFDP

mRNA from alignment at scaffold_2:420785..422746+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_782 ID=mRNA_782|Name=jgi.p|Nanoce1779_2|627209|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at scaffold_2:420785..422746+ (Nannochloropsis oceanica)
ACAGGCTAACACGGTGCATCACCACTACACACAAAATCTACACCACACCC
AGGGTCTCGTTCAATCAGAGATCATGGTGGTGGCGGTCTACACAAAGCGC
ACTCAGCAGGGCTCTAACACCTTTCCCGCCTCGGCTTCAGCTCCCGCTTC
CGCCGCCTCCCCAAGAGGCGGTACTAAGACCAGCGCCAAGGAAAAGCCGC
GGCCTCCTCCTTCTCGGGCGGCAGCTTTTATCCCACCTTTGCTCCAGCAG
GAGCCGCCTACCGGCGAGCCGTACCGGGAGCACGTCAAAATAATTCCCCC
TTCTAAGGAGCGCACAGCCCGCGTCATCAAGCAGGCCCACCACAAAGTAC
GTATCAGTAAATTAGGGAAATAGCCGGGGTGAGTTGGTGAGAGGGGTAAT
ATTATATTCCTTTTGTTTGAAGTGTCTGAGCCGTGGATGGATTGCTCACA
TGTGGCATCAAAAGGGAGAATGGGAATGCCCTGTTGAAGGCGCGTGGGGA
GAAGAATAGGATTGTTATCTACTTAATTCTTCTTCCAAATAAAAGGCGCG
ACTCGCACTTCCCTGAAATACATTTTTTTTTCATTTAAACTCATTCACCG
ACTCCTGGCTCATCCACCTTCGCAGCGGTTAAAGCAAGTCCGCGGGGCCG
ATCGTCAAATTGCTGCCGCCATCCGTGCCCACTACCAGGAACGCCTCGAA
AAAGGGAAGGCCCGAGTCATGGCCAAGGCTTACGCAGTCTGGCAGGGAGA
GATGAAAGAGAGAATACGTATACTGAGCACGCGATTGCAAAACTCTGTTG
TGTCCATTGGTGCAGGGCATCGCCAGGCCGAAGCAGCAGTCATGGAGAAG
GAGCGACAAGCAGCGGCGGCAACGCAACAGGCTCAGAAACGACGCGAGGA
GGAATCTGTCCGCTTTGGTCGAGCACAAGAGAGGGCGCGGGTGGGAGGCC
GGCAACGGGCGGAGATGTCGCGGTCCTCGTCCCAAGCCCGGCAGAGGGAA
GAGAGTCGGAAAAACTTTATGATCAAGTCTCGGTCGATGACGCAACTGAG
GAGCAGCAGCAGCAGCAGCAGTGGCAGCATTTTGCCGAAAATGAGCCTGG
CTGCCAGTACAGGGGCCGTTCAAACCAGCAGTCCTTTTTTGGTGCGTGGC
GCTGTGAGAGCAAGGAGGACATCGAGCGCGGGAAGGCGTATGGGAATGGG
AGGAGGGGTGGGAGGGAAGAAAGGGAAAATGGCGGATGAGTTGCTCGAGG
CGTTGGCGTCGCTGGACCGAGATCGGAAGATGCAGAAGCAAGACGTCATA
TCTTCATTTGCATTGCAACCATCTCAGAAAGCGAGTCGTAGAGGAGGAGG
AGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGGGGGAGTGGGTAAGGG
GAGAAGAAGCACAGGCTGAAAAAGGGGTGGAATCTTTATTAATGGGGCAC
GTTCCCTTGGCGGCATCGCACCCGCCGGCATCTCGAGCACCTCGAACAGC
AGCAGAATCGTCAACAACAGCAGGACCTACACGTGTGCAACGTCCTCGTC
CTGGTGGTGCTTCGCGGCAGATGCCACTCGAAGAAGAGAAGGAAGAGGAG
GAGGAGCAGGAGAAGGAAGACATACGAGGAGTCACTGGGACAACGTGGCA
AGACATGGAGGAGAAGGTAGCGCGAATTGAGAAGCAGCGGGAGGTGGATG
AGGAGGAAGAAGCGGAGGAGGAAGGGGAGGGAGGGGCAGCTGAGTCATCT
TCCGTCGCCTTGCTAGGACGCGGGCGACGTTTCGGGCGAGGAGAGAAGCA
AGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGACGGGCG
TATTTTCATCATTATCGTCCACAGCGGAGCTTGAGCGAGAGATTGAAAGC
ATGAGAAAGAGCTTGGAGGAAGTTGCGCGATCGTTGCGTGGTCGGTCGAT
GTTTGATCCCAA

Coding sequence (CDS) from alignment at scaffold_2:420785..422746+

>mRNA_782 ID=mRNA_782|Name=jgi.p|Nanoce1779_2|627209|organism=Nannochloropsis oceanica|type=CDS|length=3216bp|location=Sequence derived from alignment at scaffold_2:420785..422746+ (Nannochloropsis oceanica)
ATGGTGGTGGCGGTCTACACAAAGCGCACTCAGCAGGGCTCTAACACCTT
TCCCGCCTCGGCTTCAGCTCCCGCTTCCGCCGCCTCCCCAAGAGGCGGTA
CTAAGACCAGCGCCAAGGAAAAGCCGCGGCCTCCTCCTTCTCGGGCGGCA
GCTTTTATCCCACCTTTGCTCCAGCAGGAGCCGCCTACCGGCGAGCCGTA
CCGGGAGCACGTCAAAATAATTCCCCCTTCTAAGGAGCGCACAGCCCGCG
TCATCAAGCAGGCCCACCACAAACGGTTAAAGCAAGTCCGCGGGGCCGAT
CGTCAAATTGCTGCCGCCATCCGTGCCCACTACCAGGAACGCCTCGAAAA
AGGGAAGGCCCGAGTCATGGCCAAGGCTTACGCAGTCTGGCAGGGAGAGA
TGAAAGAGAGAATACGTATACTGAGCACGCGATTGCAAAACTCTGTTGTG
TCCATTGGTGCAGGGCATCGCCAGGCCGAAGCAGCAGTCATGGAGAAGGA
GCGACAAGCAGCGGCGGCAACGCAACAGGCTCAGAAACGACGCGAGGAGG
AATCTGTCCGCTTTGGTCGAGCACAAGAGAGGGCGCGGGTGGGAGGCCGG
CAACGGGCGGAGATGTCGCGGTCCTCGTCCCAAGCCCGGCAGAGGGAAGA
GAGTCGGAAAAACTTTATGATCAAGTCTCGGTCGATGACGCAACTGAGGA
GCAGCAGCAGCAGCAGCAGTGGCAGCATTTTGCCGAAAATGAGCCTGGCT
GCCAGTACAGGGGCCGTTCAAACCAGCAGTCCTTTTTTGGTGCGTGGCGC
TGTGAGAGCAAGGAGGACATCGAGCGCGGGAAGGCGTATGGGAATGGGAG
GAGGGGTGGGAGGGAAGAAAGGGAAAATGGCGGATGAGTTGCTCGAGGCG
TTGGCGTCGCTGGACCGAGATCGGAAGATGCAGAAGCAAGACGTCATATC
TTCATTTGCATTGCAACCATCTCAGAAAGCGAGTCGTAGAGGAGGAGGAG
GGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGGGGGAGTGGGTAAGGGGA
GAAGAAGCACAGGCTGAAAAAGGGGTGGAATCTTTATTAATGGGGCACGT
TCCCTTGGCGGCATCGCACCCGCCGGCATCTCGAGCACCTCGAACAGCAG
CAGAATCGTCAACAACAGCAGGACCTACACGTGTGCAACGTCCTCGTCCT
GGTGGTGCTTCGCGGCAGATGCCACTCGAAGAAGAGAAGGAAGAGGAGGA
GGAGCAGGAGAAGGAAGACATACGAGGAGTCACTGGGACAACGTGGCAAG
ACATGGAGGAGAAGGTAGCGCGAATTGAGAAGCAGCGGGAGGTGGATGAG
GAGGAAGAAGCGGAGGAGGAAGGGGAGGGAGGGGCAGCTGAGTCATCTTC
CGTCGCCTTGCTAGGACGCGGGCGACGTTTCGGGCGAGGAGAGAAGCAAG
AAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGACGGGCGTA
TTTTCATCATTATCGTCCACAGCGGAGCTTGAGCGAGAGATTGAAAGCAT
GAGAAAGAGCTTGGAGGAAGTTGCGCGATCGTTGCGTGGTCGGTCGATGT
TTGATCCCATGGTGGTGGCGGTCTACACAAAGCGCACTCAGCAGGGCTCT
AACACCTTTCCCGCCTCGGCTTCAGCTCCCGCTTCCGCCGCCTCCCCAAG
AGGCGGTACTAAGACCAGCGCCAAGGAAAAGCCGCGGCCTCCTCCTTCTC
GGGCGGCAGCTTTTATCCCACCTTTGCTCCAGCAGGAGCCGCCTACCGGC
GAGCCGTACCGGGAGCACGTCAAAATAATTCCCCCTTCTAAGGAGCGCAC
AGCCCGCGTCATCAAGCAGGCCCACCACAAACGGTTAAAGCAAGTCCGCG
GGGCCGATCGTCAAATTGCTGCCGCCATCCGTGCCCACTACCAGGAACGC
CTCGAAAAAGGGAAGGCCCGAGTCATGGCCAAGGCTTACGCAGTCTGGCA
GGGAGAGATGAAAGAGAGAATACGTATACTGAGCACGCGATTGCAAAACT
CTGTTGTGTCCATTGGTGCAGGGCATCGCCAGGCCGAAGCAGCAGTCATG
GAGAAGGAGCGACAAGCAGCGGCGGCAACGCAACAGGCTCAGAAACGACG
CGAGGAGGAATCTGTCCGCTTTGGTCGAGCACAAGAGAGGGCGCGGGTGG
GAGGCCGGCAACGGGCGGAGATGTCGCGGTCCTCGTCCCAAGCCCGGCAG
AGGGAAGAGAGTCGGAAAAACTTTATGATCAAGTCTCGGTCGATGACGCA
ACTGAGGAGCAGCAGCAGCAGCAGCAGTGGCAGCATTTTGCCGAAAATGA
GCCTGGCTGCCAGTACAGGGGCCGTTCAAACCAGCAGTCCTTTTTTGGTG
CGTGGCGCTGTGAGAGCAAGGAGGACATCGAGCGCGGGAAGGCGTATGGG
AATGGGAGGAGGGGTGGGAGGGAAGAAAGGGAAAATGGCGGATGAGTTGC
TCGAGGCGTTGGCGTCGCTGGACCGAGATCGGAAGATGCAGAAGCAAGAC
GTCATATCTTCATTTGCATTGCAACCATCTCAGAAAGCGAGTCGTAGAGG
AGGAGGAGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGGGGGAGTGGG
TAAGGGGAGAAGAAGCACAGGCTGAAAAAGGGGTGGAATCTTTATTAATG
GGGCACGTTCCCTTGGCGGCATCGCACCCGCCGGCATCTCGAGCACCTCG
AACAGCAGCAGAATCGTCAACAACAGCAGGACCTACACGTGTGCAACGTC
CTCGTCCTGGTGGTGCTTCGCGGCAGATGCCACTCGAAGAAGAGAAGGAA
GAGGAGGAGGAGCAGGAGAAGGAAGACATACGAGGAGTCACTGGGACAAC
GTGGCAAGACATGGAGGAGAAGGTAGCGCGAATTGAGAAGCAGCGGGAGG
TGGATGAGGAGGAAGAAGCGGAGGAGGAAGGGGAGGGAGGGGCAGCTGAG
TCATCTTCCGTCGCCTTGCTAGGACGCGGGCGACGTTTCGGGCGAGGAGA
GAAGCAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGA
CGGGCGTATTTTCATCATTATCGTCCACAGCGGAGCTTGAGCGAGAGATT
GAAAGCATGAGAAAGAGCTTGGAGGAAGTTGCGCGATCGTTGCGTGGTCG
GTCGATGTTTGATCCC

Synonyms

Publications