jgi.p|Nanoce1779_2|545709, mRNA_7819 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|545709
Unique NamemRNA_7819
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1103
Alignment locationscaffold_21:408956..410373 +

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Properties
Property NameValue
TranscriptId545795
TrackFilteredModels2
ProteinId545709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:408956..410373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545709gene_7819Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545709mRNA_7819-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7819CDS_7819Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7819 ID=mRNA_7819|Name=jgi.p|Nanoce1779_2|545709|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp
TCCTTGGACCGCGCGTCCGAAAAACAACGGCGGCCTCAGCTTGGCGAGAG
CTGCACGACACAACGACGATTGCGGTCCCGGGGGAGAAGTGTTGCTAACG
CACCTCGCTCGTCTTCCAAGTATTGTCGCGGCGAATAGCCTCCATGACAT
GCACAAAACCTCGCTGGCCATAACCTTAATCACTATGTCACTTTCATTCT
CACCTCTTTGACAGACAGGCGGGGGAAAAGCATCACGGGAGACAAGTGCG
GGCAAAAACTACAAAAGACAATGCCTATGCACGCGGAGCTGTGCTTCTGT
CCTCCATATCTTTTTGTTCGTTCAGGATCGTCATGGGGTGTGCATCTTGC
GTCATTTCCCACCCCTCAAGCGTGCCCCACGCAGCGCTCCCCCAGTACAT
GATGTAGAAGCCTGATATTTGCTCGTACATGTAATTATGTCGGACTTGCC
CGATACAATCGGTCTGTGACTTTTGTCCACATATTTCTCCACTACACACC
CCTTCAATTTGCACAAATAGAACAGAGGCAACAAAATGGATGACGTCGAG
GCAGTGGGCCATCGCATCCACGATGCAGCCAAGAAAGGATCGATTGAGAA
GGTGGCGAAGCTTCTAAAACAGTATCCCCAGTTGGTGAATGACAAGGGGG
AAGACGGGTGGACGCCGCTATTCCGTGCCTGCTACAATAACCGCCTTGAT
CTGGTAAAATTTCTGGCAGAGCACGGGGCCAACTTAGGGCGGGATGCCGA
TGATTTCCAGAACACGGCCCTGCACGCATGTTGCATCAATGGGCATAGGG
AAGTGGCAGAGTATTTGCTGACAAAAGGGGTGAATGTGAACTGCCACGAT
AACGTGGGGGGATGGACCCCTGTGTACGCTGCTTCATTTTTTGGGTGGCC
GGATCTTGTGAGGTTTTTATTGAAAAATGGGGCGGATCCGACGATCGTCT
GTAAGGAGGGGAAGGCTCCGCTGGACGTGGTGTGCGAGGCAGGGTACCGT
GGCGAACATCGCTTGGTGATCGAGGCACTGCTGCAGGACAGGCCGGAACC
AACTGTGTTGCCTCCGCGAAGCGTGAGGGTGCCGGTTGGGGTGGAAGAAG
GGG
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protein sequence of jgi.p|Nanoce1779_2|545709

>mRNA_7819-protein ID=mRNA_7819-protein|Name=jgi.p|Nanoce1779_2|545709|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACY
NNRLDLVKFLAEHGANLGRDADDFQNTALHACCINGHREVAEYLLTKGVN
VNCHDNVGGWTPVYAASFFGWPDLVRFLLKNGADPTIVCKEGKAPLDVVC
EAGYRGEHRLVIEALLQDRPEPTVLPPRSVRVPVGVEEG
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mRNA from alignment at scaffold_21:408956..410373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7819 ID=mRNA_7819|Name=jgi.p|Nanoce1779_2|545709|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at scaffold_21:408956..410373+ (Nannochloropsis oceanica)
TCCTTGGACCGCGCGTCCGAAAAACAACGGCGGCCTCAGCTTGGCGAGAG
CTGCACGACACAACGACGATTGCGGTCCCGGGGGAGAAGTGTTGCTAACG
CACCTCGCTCGTCTTCCAAGTATTGTCGCGGCGAATAGCCTCCATGACAT
GCACAAAACCTCGCTGGCCATAACCTTAATCACTATGTCACTTTCATTCT
CACCTCTTTGACAGACAGGCGGGGGAAAAGCATCACGGGAGACAAGTGCG
GGCAAAAACTACAAAAGGTAAGGCCGCGCCAATGTTTCCGCCGCATTTAC
ACCATATATGTCGCCGTCTCACAAGCCCTACATGGCCACAGACAATGCCT
ATGCACGCGGAGCTGTGCTTCTGTCCTCCATATCTTTTTGTTCGTTCAGG
ATCGTCATGGGGTGTGCATCTTGCGTCATTTCCCACCCCTCAAGCGTGCC
CCACGCAGCGCTCCCCCAGTACATGATGTAGAAGCCTGATATTTGCTCGT
ACATGTAATTATGTCGGACTTGCCCGATACAATCGGTCTGTGACTTTTGT
CCACATATTTCTCCACTACACACCCCTTCAATTTGCACAAATAGAACAGA
GGCAACAAAATGGATGACGTCGAGGCAGTGGGCCATCGCATCCACGATGC
AGCCAAGAAAGGATCGATTGAGAAGGTGGCGAAGCTTCTAAAACAGTATC
CCCAGTTGGTGAATGACAAGGTAGGTGGGTGGTAGGGGACAGGAAGGAGG
AGACTAGGAGCGAGGGAACGAGAAAGGAGAGAGTGGAGGATTCCATGATT
CACGTTTTGCTGGCTTCTCCATTAGCTGTGACCCTTCTGTCACTCGTTGT
GCTAATTTGGAAATCCATACTCAATCACACGCACACACACACTAACACGC
ACATATGTACCTGTCACCTCCCTCCCTTTCTCCTCCTTCCCTTTCTTTCT
TCCCTGCCTAGGGGGAAGACGGGTGGACGCCGCTATTCCGTGCCTGCTAC
AATAACCGCCTTGATCTGGTAAAATTTCTGGCAGAGCACGGGGCCAACTT
AGGGCGGGATGCCGATGATTTCCAGAACACGGCCCTGCACGCATGTTGCA
TCAATGGGCATAGGGAAGTGGCAGAGTATTTGCTGACAAAAGGGGTGAAT
GTGAACTGCCACGATAACGTGGGGGGATGGACCCCTGTGTACGCTGCTTC
ATTTTTTGGGTGGCCGGATCTTGTGAGGTTTTTATTGAAAAATGGGGCGG
ATCCGACGATCGTCTGTAAGGAGGGGAAGGCTCCGCTGGACGTGGTGTGC
GAGGCAGGGTACCGTGGCGAACATCGCTTGGTGATCGAGGCACTGCTGCA
GGACAGGCCGGAACCAACTGTGTTGCCTCCGCGAAGCGTGAGGGTGCCGG
TTGGGGTGGAAGAAGGGG
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Coding sequence (CDS) from alignment at scaffold_21:408956..410373+

>mRNA_7819 ID=mRNA_7819|Name=jgi.p|Nanoce1779_2|545709|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_21:408956..410373+ (Nannochloropsis oceanica)
ATGGATGACGTCGAGGCAGTGGGCCATCGCATCCACGATGCAGCCAAGAA
AGGATCGATTGAGAAGGTGGCGAAGCTTCTAAAACAGTATCCCCAGTTGG
TGAATGACAAGGGGGAAGACGGGTGGACGCCGCTATTCCGTGCCTGCTAC
AATAACCGCCTTGATCTGGTAAAATTTCTGGCAGAGCACGGGGCCAACTT
AGGGCGGGATGCCGATGATTTCCAGAACACGGCCCTGCACGCATGTTGCA
TCAATGGGCATAGGGAAGTGGCAGAGTATTTGCTGACAAAAGGGGTGAAT
GTGAACTGCCACGATAACGTGGGGGGATGGACCCCTGTGTACGCTGCTTC
ATTTTTTGGGTGGCCGGATCTTGTGAGGTTTTTATTGAAAAATGGGGCGG
ATCCGACGATCGTCTGTAAGGAGGGGAAGGCTCCGCTGGACGTGGTGTGC
GAGGCAGGGTACCGTGGCGAACATCGCTTGGTGATCGAGGCACTGCTGCA
GGACAGGCCGGAACCAACTGTGTTGCCTCCGCGAAGCGTGAGGGTGCCGG
TTGGGGTGGAAGAAGGGATGGATGACGTCGAGGCAGTGGGCCATCGCATC
CACGATGCAGCCAAGAAAGGATCGATTGAGAAGGTGGCGAAGCTTCTAAA
ACAGTATCCCCAGTTGGTGAATGACAAGGGGGAAGACGGGTGGACGCCGC
TATTCCGTGCCTGCTACAATAACCGCCTTGATCTGGTAAAATTTCTGGCA
GAGCACGGGGCCAACTTAGGGCGGGATGCCGATGATTTCCAGAACACGGC
CCTGCACGCATGTTGCATCAATGGGCATAGGGAAGTGGCAGAGTATTTGC
TGACAAAAGGGGTGAATGTGAACTGCCACGATAACGTGGGGGGATGGACC
CCTGTGTACGCTGCTTCATTTTTTGGGTGGCCGGATCTTGTGAGGTTTTT
ATTGAAAAATGGGGCGGATCCGACGATCGTCTGTAAGGAGGGGAAGGCTC
CGCTGGACGTGGTGTGCGAGGCAGGGTACCGTGGCGAACATCGCTTGGTG
ATCGAGGCACTGCTGCAGGACAGGCCGGAACCAACTGTGTTGCCTCCGCG
AAGCGTGAGGGTGCCGGTTGGGGTGGAAGAAGGG
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Synonyms
Publications