jgi.p|Nanoce1779_2|600153, mRNA_7818 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600153
Unique NamemRNA_7818
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length868
Alignment locationscaffold_21:407923..408980 -

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Properties
Property NameValue
TranscriptId600239
TrackFilteredModels2
ProteinId600153
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:407923..408980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600153gene_7818Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600153mRNA_7818-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7818CDS_7818Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7818 ID=mRNA_7818|Name=jgi.p|Nanoce1779_2|600153|organism=Nannochloropsis oceanica|type=mRNA|length=868bp
GTTTTTCGGACGCGCGGTCCAAGGACATTTCCCCCCTTGCTTTTCACGAC
ACAGCCATTAAGCGGACCAATTTATGGCGAATATGACGCATTGAAATTTG
ATGCGAGTGTGTGTCCAGTCGCAGTACTGCTTGGCAAAAGCATGCGGGTG
GGGAGCGTGGTGGCCGGCCATGTCTTGAAAGTTACCTCCCCAACCCTTCT
TATCTTTACCACAGGGGGGAAAAAACTCAGCGCAAGTCAGCCCTCTACTG
GCCCCATAAGTGCAACCAGAACGACGAAAACAGAGCCATGGCTACTTCAT
CCCCACCACCGTCTCACATCGACCACGACGCGATTTACCTCCAGCAAGCC
CTCATTGAGGCCCAGCAGGGGCTCGAGGAGGGGGGTATCCCTATCGGGGC
CGTCTTGGTCCTCCGAGAAGCAGGTGGAACCCGGCGAGTCCTAGGGAAAG
GCCACAATCGACGCGTGCAGAAAGGCTCGGCCATCTTGCATGGGGAGATA
GATTGCTTGGAAAACGCTGGACGGTTGCCTGCTTCTGTGTATAAAATGTG
TACCATGTACACCACGCTGTCGCCGTGTTCGATGTGTAGTGGGGCGATCC
TGTTGTTTGGGATTCCACGAGTTGTAGTAGGGGAAAACAAGACTTTTATG
GGCGCAGAGGACTATTTGAGCGCACAGGGGGTCGAGGTAATCGTGAAGCA
GGATGAAGGGTGTGTGCAGATTATGACGGAGTTTATTAAGGAGAATGCAG
AGCTGTGGGAGGAGGATAGTGGACAGTCGAAGGAGTGAGCTTCGGGTACG
GAGAAGAGTGAGAAGGGGAAAAAGCGGATGCTCTCTTTTGTTCATAGAAA
GATTTTACTATCTACGAA
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protein sequence of jgi.p|Nanoce1779_2|600153

>mRNA_7818-protein ID=mRNA_7818-protein|Name=jgi.p|Nanoce1779_2|600153|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MATSSPPPSHIDHDAIYLQQALIEAQQGLEEGGIPIGAVLVLREAGGTRR
VLGKGHNRRVQKGSAILHGEIDCLENAGRLPASVYKMCTMYTTLSPCSMC
SGAILLFGIPRVVVGENKTFMGAEDYLSAQGVEVIVKQDEGCVQIMTEFI
KENAELWEEDSGQSKE*
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mRNA from alignment at scaffold_21:407923..408980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7818 ID=mRNA_7818|Name=jgi.p|Nanoce1779_2|600153|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp|location=Sequence derived from alignment at scaffold_21:407923..408980- (Nannochloropsis oceanica)
GTTTTTCGGACGCGCGGTCCAAGGACATTTCCCCCCTTGCTTTTCACGAC
ACAGCCATTAAGCGGACCAATTTATGGCGAATATGACGCATTGAAATTTG
ATGCGAGTGTGTGTCCAGTCGCAGTACTGCTTGGCAAAAGCATGCGGGTG
GGGAGCGTGGTGGCCGGCCATGTCTTGAAAGTTACCTCCCCAACCCTTCT
TATCTTTACCACAGGGGGGAAAAAACTCAGCGCAAGTCAGCCCTCTACTG
GCCCCATAAGTGCAACCAGAACGACGAAAACAGGTAGAGTGATAAAATCT
CATATTATGCTCCCTGTTTGCCTTAGCTTGTGGCGACATCGCAATCAGCA
ACGCCGTCGGGTAGGCCATCTATACCGCTGCCACTCTGCCAAGCAACTTC
TCGCTCAATTGAACCTTCCCGATGCCTTGATTGCTACCCCCCTCCACCAT
GCCACTCAATCCCCCCCAAACAGAGCCATGGCTACTTCATCCCCACCACC
GTCTCACATCGACCACGACGCGATTTACCTCCAGCAAGCCCTCATTGAGG
CCCAGCAGGGGCTCGAGGAGGGGGGTATCCCTATCGGGGCCGTCTTGGTC
CTCCGAGAAGCAGGTGGAACCCGGCGAGTCCTAGGGAAAGGCCACAATCG
ACGCGTGCAGAAAGGCTCGGCCATCTTGCATGGGGAGATAGATTGCTTGG
AAAACGCTGGACGGTTGCCTGCTTCTGTGTATAAAATGTGTACCATGTAC
ACCACGCTGTCGCCGTGTTCGATGTGTAGTGGGGCGATCCTGTTGTTTGG
GATTCCACGAGTTGTAGTAGGGGAAAACAAGACTTTTATGGGCGCAGAGG
ACTATTTGAGCGCACAGGGGGTCGAGGTAATCGTGAAGCAGGATGAAGGG
TGTGTGCAGATTATGACGGAGTTTATTAAGGAGAATGCAGAGCTGTGGGA
GGAGGATAGTGGACAGTCGAAGGAGTGAGCTTCGGGTACGGAGAAGAGTG
AGAAGGGGAAAAAGCGGATGCTCTCTTTTGTTCATAGAAAGATTTTACTA
TCTACGAA
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Coding sequence (CDS) from alignment at scaffold_21:407923..408980-

>mRNA_7818 ID=mRNA_7818|Name=jgi.p|Nanoce1779_2|600153|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_21:407923..408980- (Nannochloropsis oceanica)
ATGGCTACTTCATCCCCACCACCGTCTCACATCGACCACGACGCGATTTA
CCTCCAGCAAGCCCTCATTGAGGCCCAGCAGGGGCTCGAGGAGGGGGGTA
TCCCTATCGGGGCCGTCTTGGTCCTCCGAGAAGCAGGTGGAACCCGGCGA
GTCCTAGGGAAAGGCCACAATCGACGCGTGCAGAAAGGCTCGGCCATCTT
GCATGGGGAGATAGATTGCTTGGAAAACGCTGGACGGTTGCCTGCTTCTG
TGTATAAAATGTGTACCATGTACACCACGCTGTCGCCGTGTTCGATGTGT
AGTGGGGCGATCCTGTTGTTTGGGATTCCACGAGTTGTAGTAGGGGAAAA
CAAGACTTTTATGGGCGCAGAGGACTATTTGAGCGCACAGGGGGTCGAGG
TAATCGTGAAGCAGGATGAAGGGTGTGTGCAGATTATGACGGAGTTTATT
AAGGAGAATGCAGAGCTGTGGGAGGAGGATAGTGGACAGTCGAAGGAGTG
A
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Synonyms
Publications