|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 600216 |
| Track | FilteredModels2 |
| ProteinId | 600130 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:391167..392729 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7814 ID=mRNA_7814|Name=jgi.p|Nanoce1779_2|600130|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
GCCCATGTTTCATTAGTGTCGCTCTTCATGTTGCATTTCAAATTATCCTT
CCCCAGAGAGTGACGTTGGATACCAACCTCCCCACCAACCTCAGCACAAT
TTATTTCCTGTGTCACCTCATTCTTTCAAAGCCCTGCGCTCACATCATCA
CATTACACCCATTACAATTGCACACGGTCCATGCACATCAAACCATCCCT
ACTGCCTAGCCCGTACCAAGCCGAACATGCCTAAGCTCCCAGCCATCCTT
CTTATCCTGTCCACCTTCGTCACTATACCCTGCGTGCATGCTTCGCCTGT
CTTCCCTTTTTCTCTGGGCATTCGGGACAGCATCATGATTGCCCATTCCT
TTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGTGCACGGTGCGACCTAC
ACCGTCGATGTCACATTCCGGAGCAAGGCTTTAGTTCCGAAATGCAATTG
GGTCGTGGATATCGGAGAGGCATCTACGGCTTTGGGCCGCATTTTGAGTA
AATACAATTTTAAGAATCTCGATGAGGTCTTCCCGGAGGGGGAGAATACG
ACGACCGAGTTTATGTGTAAAGCCATCCATGGAGATTTGGCCAAGTTCTT
CTGCACAGATCGAGCGAAGACGGGGGGAGGGGAGAGGTTCAAGGGCTCGA
TTTGTGTAAAATTGTGGGAGAGTCATAAGGCATGGGCATGTTATGAGGCG
AACGTTTGAACTGGAGGAGAGAGGATGAAGGGGGAGAGAGAAGAGGAGTG
AGGAAAGAAGTCAAAGAAGAAAAATAAATTCGCCTCAATCCTACAATCTT
TCATGGAGGAAATCTAGTAGTCTCTGTCAAATTCATTCTTTACGTATGGG
CGTATTAAGATGAGAGTATGTGAAGTGAAGGACACAATAAAGGAGTAAGA
AAGGGGTGGAGGGAATTGCAAAGGCTCCCGAAAACCAAAATGTGAAATGA
TGAGTGAGAATGACGGGTGTCACTAGTGAACTTAATCCCACCGCGGGAGA
GAAGAGTGGGGCATCTAAAAATTCGTTTGCCTTTCTCATGTACCGTATCC
ATGACCAAGGCATACCTATCTTTGCCATCTGTCTTTTTGTCTTTGTCTTT
GTAAAATGCTTCCCTCCCAGGAGCCACCAACCCGTCCATCCTTCTCTCCT
TACTTTTCTGCCTCCTACATGCACATGGCAAGCTTTTTACCACACTTCCC
ACACCGAATATTCGAATAGTCTTCATGGCCGTCAGGCAAGGGCAGGAGCC
CTCCACACCCTCCACACGGGGCGGCGAAGGCATTCTCGCCCGAGTCCTCC
ATGAGAGGAGCAAAGGTCAAAATGGACGACTTCCTACTACTGCCTCTGCT
GCTGCTGGTGCTGCTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTTTT
CGCCGGCTTTTTGAGGGGGGAGAGAAGCAGGAGGAGGGGAGGTGCGGAGC
GG back to topprotein sequence of jgi.p|Nanoce1779_2|600130 >mRNA_7814-protein ID=mRNA_7814-protein|Name=jgi.p|Nanoce1779_2|600130|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MPKLPAILLILSTFVTIPCVHASPVFPFSLGIRDSIMIAHSFKGEQFGPA
QNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDE
VFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESH
KAWACYEANV* back to topmRNA from alignment at scaffold_21:391167..392729+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7814 ID=mRNA_7814|Name=jgi.p|Nanoce1779_2|600130|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at scaffold_21:391167..392729+ (Nannochloropsis oceanica)
GCCCATGTTTCATTAGTGTCGCTCTTCATGTTGCATTTCAAATTATCCTT
CCCCAGAGAGTGACGTTGGATACCAACCTCCCCACCAACCTCAGCACAAT
TTATTTCCTGTGTCACCTCATTCTTTCAAAGCCCTGCGCTCACATCATCA
CATTACACCCATTACAATTGCACACGGTCCATGCACATCAAACCATCCCT
ACTGCCTAGCCCGTACCAAGCCGAACATGCCTAAGGTACGTACATTATTT
CCCTTTATTCCCCTCGCCCTAGTCTCGGCCCCTGTTTTGTCAACTCAGCC
AAGATACGTTGCATCCTTCCTCCTCCTTTCCTTTCCCTCCTCATAGCTCC
CAGCCATCCTTCTTATCCTGTCCACCTTCGTCACTATACCCTGCGTGCAT
GCTTCGCCTGTCTTCCCTTTTTCTCTGGGCATTCGGGACAGCATCATGAT
TGCCCATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGTGCACG
GTGCGACCTACACCGTCGATGTCACATTCCGGAGCAAGGCTTTAGTTCCG
AAATGCAATTGGGTCGTGGATATCGGAGAGGCATCTACGGCTTTGGGCCG
CATTTTGAGTAAATACAATTTTAAGAATCTCGATGAGGTCTTCCCGGAGG
GGGAGAATACGACGACCGAGTTTATGTGTAAAGCCATCCATGGAGATTTG
GCCAAGTTCTTCTGCACAGATCGAGCGAAGACGGGGGGAGGGGAGAGGTT
CAAGGGCTCGATTTGTGTAAAATTGTGGGAGAGTCATAAGGCATGGGCAT
GTTATGAGGCGAACGTTTGAACTGGAGGAGAGAGGATGAAGGGGGAGAGA
GAAGAGGAGTGAGGAAAGAAGTCAAAGAAGAAAAATAAATTCGCCTCAAT
CCTACAATCTTTCATGGAGGAAATCTAGTAGTCTCTGTCAAATTCATTCT
TTACGTATGGGCGTATTAAGATGAGAGTATGTGAAGTGAAGGACACAATA
AAGGAGTAAGAAAGGGGTGGAGGGAATTGCAAAGGCTCCCGAAAACCAAA
ATGTGAAATGATGAGTGAGAATGACGGGTGTCACTAGTGAACTTAATCCC
ACCGCGGGAGAGAAGAGTGGGGCATCTAAAAATTCGTTTGCCTTTCTCAT
GTACCGTATCCATGACCAAGGCATACCTATCTTTGCCATCTGTCTTTTTG
TCTTTGTCTTTGTAAAATGCTTCCCTCCCAGGAGCCACCAACCCGTCCAT
CCTTCTCTCCTTACTTTTCTGCCTCCTACATGCACATGGCAAGCTTTTTA
CCACACTTCCCACACCGAATATTCGAATAGTCTTCATGGCCGTCAGGCAA
GGGCAGGAGCCCTCCACACCCTCCACACGGGGCGGCGAAGGCATTCTCGC
CCGAGTCCTCCATGAGAGGAGCAAAGGTCAAAATGGACGACTTCCTACTA
CTGCCTCTGCTGCTGCTGGTGCTGCTGGTGCTGCTGCTGCTGCTGCTGCT
GCTGCTTTTTTCGCCGGCTTTTTGAGGGGGGAGAGAAGCAGGAGGAGGGG
AGGTGCGGAGCGG back to topCoding sequence (CDS) from alignment at scaffold_21:391167..392729+ >mRNA_7814 ID=mRNA_7814|Name=jgi.p|Nanoce1779_2|600130|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_21:391167..392729+ (Nannochloropsis oceanica)
ATGCCTAAGCTCCCAGCCATCCTTCTTATCCTGTCCACCTTCGTCACTAT
ACCCTGCGTGCATGCTTCGCCTGTCTTCCCTTTTTCTCTGGGCATTCGGG
ACAGCATCATGATTGCCCATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCC
CAAAACGTGCACGGTGCGACCTACACCGTCGATGTCACATTCCGGAGCAA
GGCTTTAGTTCCGAAATGCAATTGGGTCGTGGATATCGGAGAGGCATCTA
CGGCTTTGGGCCGCATTTTGAGTAAATACAATTTTAAGAATCTCGATGAG
GTCTTCCCGGAGGGGGAGAATACGACGACCGAGTTTATGTGTAAAGCCAT
CCATGGAGATTTGGCCAAGTTCTTCTGCACAGATCGAGCGAAGACGGGGG
GAGGGGAGAGGTTCAAGGGCTCGATTTGTGTAAAATTGTGGGAGAGTCAT
AAGGCATGGGCATGTTATGAGGCGAACGTTTGAATGCCTAAGCTCCCAGC
CATCCTTCTTATCCTGTCCACCTTCGTCACTATACCCTGCGTGCATGCTT
CGCCTGTCTTCCCTTTTTCTCTGGGCATTCGGGACAGCATCATGATTGCC
CATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGTGCACGGTGC
GACCTACACCGTCGATGTCACATTCCGGAGCAAGGCTTTAGTTCCGAAAT
GCAATTGGGTCGTGGATATCGGAGAGGCATCTACGGCTTTGGGCCGCATT
TTGAGTAAATACAATTTTAAGAATCTCGATGAGGTCTTCCCGGAGGGGGA
GAATACGACGACCGAGTTTATGTGTAAAGCCATCCATGGAGATTTGGCCA
AGTTCTTCTGCACAGATCGAGCGAAGACGGGGGGAGGGGAGAGGTTCAAG
GGCTCGATTTGTGTAAAATTGTGGGAGAGTCATAAGGCATGGGCATGTTA
TGAGGCGAACGTTTGA back to top
|