jgi.p|Nanoce1779_2|600127, mRNA_7813 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600127
Unique NamemRNA_7813
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length619
Alignment locationscaffold_21:390280..391166 +

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Properties
Property NameValue
TranscriptId600213
TrackFilteredModels2
ProteinId600127
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:390280..391166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600127gene_7813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600127mRNA_7813-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7813CDS_7813Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7813 ID=mRNA_7813|Name=jgi.p|Nanoce1779_2|600127|organism=Nannochloropsis oceanica|type=mRNA|length=619bp
ACAGCAGCTGGCATGTCATCCACTTTTAACCCGCCCATCGCGGCGTTGAT
TGCCTGGACGACAATCTGCGCGACCGTCATTATCGTCACGAACGTGGCCA
AGTTCGCCAAGTATATCAACAAGGACAACGCCGGGATTGCCGTCGTCTTC
ACTATTACAGCAGGAATCTCCACCTACATGCTCTGGTTGGTTACGTGGAT
GCAGCAATGGCACCCCCTTCTTACACCCGTCATGCCCGCTGATTAGGTAT
GAATGAAACGAAATAAAGAAATACAATGATCCACAGGGAGGGTTCGAAGG
CATGTAAGATCTGGTTATAGAAATGTACACCTCCCTTTTCCTACTCAAAC
TCCTCTCAAACTTTACACCCCGCCACCCACAGATGACGAAGCCGGAGCGT
GAGACATTTTTCTCATTCGTCGCGATTTGGTGTCCCGACCACCTTGTATG
TATGTACACGGGGCCTTGCCTGGGGCGGAGAGAGATAATGAAAATGGAAA
TCAAGGGGTCAGTGGGAGGACGAGGCACGCCCCAGCAGCAATCCTTCCTC
GCAAACCACGACGAAAAAAAAAACAAAGAAATAAATTTGACTGGGTTTTC
TTTGTTGGTTGATTGGAAA
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protein sequence of jgi.p|Nanoce1779_2|600127

>mRNA_7813-protein ID=mRNA_7813-protein|Name=jgi.p|Nanoce1779_2|600127|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MSSTFNPPIAALIAWTTICATVIIVTNVAKFAKYINKDNAGIAVVFTITA
GISTYMLWLVTWMQQWHPLLTPVMPAD*
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mRNA from alignment at scaffold_21:390280..391166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7813 ID=mRNA_7813|Name=jgi.p|Nanoce1779_2|600127|organism=Nannochloropsis oceanica|type=mRNA|length=887bp|location=Sequence derived from alignment at scaffold_21:390280..391166+ (Nannochloropsis oceanica)
ACAGCAGCTGGCATGTCATCCACTTTTAACCCGCCCATCGCGGCGTTGAT
TGCCTGGACGACAATCTGCGCGACCGTCATTATCGTCACGAACGTGGCCA
AGTTCGCCAAGTATATCAACAAGGACAACGCCGGGTAAGCGGATGTTATG
ATTAAAGAGGGGTTATATATAAAGGGGAGATAATGGACATCGATGCTTTA
TGTTTTTGGGCATCTGGGGTTGTGCATCTAGTTCATCTGTTTCTTTCCCC
GTTTTCTTCATTTCCACAGGATTGCCGTCGTCTTCACTATTACAGCAGGA
ATCTCCACCTACATGCTCTGGTACGTGAGGTGTATTTGTGTGAATATGCA
TTCATTCTTTTTTTTAAAGTACCTCTCGCGTCCCCATTTTTCAAAGAGGC
ATGTTGACACAACTTACGCCCACCCCTCTAATTCTCTTCCCTAACCAAAC
CAGGTTGGTTACGTGGATGCAGCAATGGCACCCCCTTCTTACACCCGTCA
TGCCCGCTGATTAGGTATGAATGAAACGAAATAAAGAAATACAATGATCC
ACAGGGAGGGTTCGAAGGCATGTAAGATCTGGTTATAGAAATGTACACCT
CCCTTTTCCTACTCAAACTCCTCTCAAACTTTACACCCCGCCACCCACAG
ATGACGAAGCCGGAGCGTGAGACATTTTTCTCATTCGTCGCGATTTGGTG
TCCCGACCACCTTGTATGTATGTACACGGGGCCTTGCCTGGGGCGGAGAG
AGATAATGAAAATGGAAATCAAGGGGTCAGTGGGAGGACGAGGCACGCCC
CAGCAGCAATCCTTCCTCGCAAACCACGACGAAAAAAAAAACAAAGAAAT
AAATTTGACTGGGTTTTCTTTGTTGGTTGATTGGAAA
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Coding sequence (CDS) from alignment at scaffold_21:390280..391166+

>mRNA_7813 ID=mRNA_7813|Name=jgi.p|Nanoce1779_2|600127|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_21:390280..391166+ (Nannochloropsis oceanica)
ATGTCATCCACTTTTAACCCGCCCATCGCGGCGTTGATTGCCTGGACGAC
AATCTGCGCGACCGTCATTATCGTCACGAACGTGGCCAAGTTCGCCAAGT
ATATCAACAAGGACAACGCCGGGATTGCCGTCGTCTTCACTATTACAGCA
GGAATCTCCACCTACATGCTCTGGTTGGTTACGTGGATGCAGCAATGGCA
CCCCCTTCTTACACCCGTCATGCCCGCTGATTAGATGTCATCCACTTTTA
ACCCGCCCATCGCGGCGTTGATTGCCTGGACGACAATCTGCGCGACCGTC
ATTATCGTCACGAACGTGGCCAAGTTCGCCAAGTATATCAACAAGGACAA
CGCCGGGATTGCCGTCGTCTTCACTATTACAGCAGGAATCTCCACCTACA
TGCTCTGGTTGGTTACGTGGATGCAGCAATGGCACCCCCTTCTTACACCC
GTCATGCCCGCTGATTAGATGTCATCCACTTTTAACCCGCCCATCGCGGC
GTTGATTGCCTGGACGACAATCTGCGCGACCGTCATTATCGTCACGAACG
TGGCCAAGTTCGCCAAGTATATCAACAAGGACAACGCCGGGATTGCCGTC
GTCTTCACTATTACAGCAGGAATCTCCACCTACATGCTCTGGTTGGTTAC
GTGGATGCAGCAATGGCACCCCCTTCTTACACCCGTCATGCCCGCTGATT
AG
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Synonyms
Publications