jgi.p|Nanoce1779_2|600117, mRNA_7812 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600117
Unique NamemRNA_7812
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length593
Alignment locationscaffold_21:387852..388444 +

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Properties
Property NameValue
TranscriptId600203
TrackFilteredModels2
ProteinId600117
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:387852..388444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600117gene_7812Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600117mRNA_7812-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7812CDS_7812Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7812 ID=mRNA_7812|Name=jgi.p|Nanoce1779_2|600117|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
ACAGGAAAAACAGTCTTAGGACGCCCATCCAAAATGGCAGAGGACGACCC
GATCATGGACGTGGCGGAGGAGGGAGAGGAGGGTGAGGAGGCGGCCCCCG
CTGTGGAGGAGGAGTTGGAGCTCAATGAGGAGTCGGCACTCCGCGGTGTC
CTGCGCAAGGCGCTGGTGCACGACGGCCTCCAGCGTGGCTTGCACGAGAG
TGCCAAGGCCCTGGACCGCCACTCGGCCAAGCTGTGCGTGTTAGCGCGTG
ATGTGGACTCTGACGAGTACAAGACGTTGGTGACGGCGCTGTGCAAGGAG
GGGAGCGTGCCCTTGCTGTACATCGACACTCGCGAGAAGCTCGGGGAGTT
CGTTGGCCTGGCTAAGGTTGACAAGGAGGGCAACCCCCGTGGAAAGATCC
AGAAATGCTCTGTGGCTGTGGTGACTGACTTCGGGGAGGAGAGCCGCGAG
TACCACAAGCTTCAGGAGTTCATCGCTAAGGTGCAAGAGTAGTGTTCTAT
CCAGTACTGAGGACGGGAGGGAGGGAGGGAAGGAAAATGAGAGGGAGAAA
CGAAAGGGGCAGCACAGTGACGGTGTTGTTCATTTTCTTCCCT
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protein sequence of jgi.p|Nanoce1779_2|600117

>mRNA_7812-protein ID=mRNA_7812-protein|Name=jgi.p|Nanoce1779_2|600117|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MAEDDPIMDVAEEGEEGEEAAPAVEEELELNEESALRGVLRKALVHDGLQ
RGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTR
EKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKV
QE*
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mRNA from alignment at scaffold_21:387852..388444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7812 ID=mRNA_7812|Name=jgi.p|Nanoce1779_2|600117|organism=Nannochloropsis oceanica|type=mRNA|length=593bp|location=Sequence derived from alignment at scaffold_21:387852..388444+ (Nannochloropsis oceanica)
ACAGGAAAAACAGTCTTAGGACGCCCATCCAAAATGGCAGAGGACGACCC
GATCATGGACGTGGCGGAGGAGGGAGAGGAGGGTGAGGAGGCGGCCCCCG
CTGTGGAGGAGGAGTTGGAGCTCAATGAGGAGTCGGCACTCCGCGGTGTC
CTGCGCAAGGCGCTGGTGCACGACGGCCTCCAGCGTGGCTTGCACGAGAG
TGCCAAGGCCCTGGACCGCCACTCGGCCAAGCTGTGCGTGTTAGCGCGTG
ATGTGGACTCTGACGAGTACAAGACGTTGGTGACGGCGCTGTGCAAGGAG
GGGAGCGTGCCCTTGCTGTACATCGACACTCGCGAGAAGCTCGGGGAGTT
CGTTGGCCTGGCTAAGGTTGACAAGGAGGGCAACCCCCGTGGAAAGATCC
AGAAATGCTCTGTGGCTGTGGTGACTGACTTCGGGGAGGAGAGCCGCGAG
TACCACAAGCTTCAGGAGTTCATCGCTAAGGTGCAAGAGTAGTGTTCTAT
CCAGTACTGAGGACGGGAGGGAGGGAGGGAAGGAAAATGAGAGGGAGAAA
CGAAAGGGGCAGCACAGTGACGGTGTTGTTCATTTTCTTCCCT
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Coding sequence (CDS) from alignment at scaffold_21:387852..388444+

>mRNA_7812 ID=mRNA_7812|Name=jgi.p|Nanoce1779_2|600117|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_21:387852..388444+ (Nannochloropsis oceanica)
ATGGCAGAGGACGACCCGATCATGGACGTGGCGGAGGAGGGAGAGGAGGG
TGAGGAGGCGGCCCCCGCTGTGGAGGAGGAGTTGGAGCTCAATGAGGAGT
CGGCACTCCGCGGTGTCCTGCGCAAGGCGCTGGTGCACGACGGCCTCCAG
CGTGGCTTGCACGAGAGTGCCAAGGCCCTGGACCGCCACTCGGCCAAGCT
GTGCGTGTTAGCGCGTGATGTGGACTCTGACGAGTACAAGACGTTGGTGA
CGGCGCTGTGCAAGGAGGGGAGCGTGCCCTTGCTGTACATCGACACTCGC
GAGAAGCTCGGGGAGTTCGTTGGCCTGGCTAAGGTTGACAAGGAGGGCAA
CCCCCGTGGAAAGATCCAGAAATGCTCTGTGGCTGTGGTGACTGACTTCG
GGGAGGAGAGCCGCGAGTACCACAAGCTTCAGGAGTTCATCGCTAAGGTG
CAAGAGTAG
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Synonyms
Publications