|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 600201 |
| Track | FilteredModels2 |
| ProteinId | 600115 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:385725..387234 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7811 ID=mRNA_7811|Name=jgi.p|Nanoce1779_2|600115|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
CAGGCATGGCTTCGCAGCTCCTGGCCCGTGCGTTGCGACGTGTGGCTGTG
ACCGCTTCCTCGTCCTCGTCTGCCTCCCTCCTGCGCCCCGCCGTCTCCCA
AGCCACTGTCTCCTTCAGCAGCGGCGGGAGCAACAAACCCGCTCCTTTGG
AAGATCCCAAGACGAGTTTCTCGGAGGTTCTGGACCGGGCGACCAACATC
TTTTTCTTGACGGAGTTATTGCGAGGGTTTTGGTTGTCGTTCGAAGTGGC
GATGAAGCCCAAGGTCACAATCAACTACCCTTTTGAGAAGGGGCACCTCT
CCCCGCGTTTCCGAGGGGAGCATGCCTTGCGCCGGTATCCGAATGGGGAG
GAACGTTGTATTGCGTGTAAGTTGTGCGAAGCGATTTGCCCCGCCCAGGC
TATCACGATTGAAGCGGACCAGCGGGCGGATGGATCGAGGAAGACGACAA
GGTACGACATTGATATGACCAAGTGCATTTTTTGTGGGTTTTGCCAGGAA
GCGTGCCCCGTGGATGCGATTGTGGAGGGGCCAAATTTTGAATTTGCGAC
GGAGACTCACGAAGAATTGTTGTATGATAAGGAGAAGTTGCTCGCCAACG
GGGATAAATGGGAGGTGGCTATCGCGAGGAATCTGGCCGCGGAGCACTTG
TACCGGTGAGAATCCAATTATGAGTAGGAGATCGGTATGTAATCATGATG
CGATGGGGAGGGAAGAATGATGACTAAAGGGGAAGGTTACCATGATCTGA
TGGCGGAATGATCGGACCAATGTGGGCGGGAAGTGAGGAAATGAAGGATG
AGGTATGTAGAGATGCGGAGGGTGGATCAAAGATGCGCTTGGGCATTGAA
TGAAGAATGTTAGGGATAACGTAAGAGAGGCAGAGAGACAAACGTGGAGA
GAGAGGGAAAGATATGGTATTTTATCCAATGGAAATCATGTACTCGCGAG
AAGCAAACTTGACGAGAGAAAAAGAAGGAGAAAGGGAGAGAGGGTGGGAG
GAGCCATTCCCGCTTCGATGCTCCTCTACACTGTTTTTCATTGCATGCAT
GCATGGTTGCGTGCTGTCCCTCTTTCTCATATTATATACGTCCTTTGTAA
AAAAAAACTAATTCGTCTTTCCAAGGGACGTCTACCAAACTTCCTTCCCC
ATCCTCTGTCTCCTCTACCTCCTCGTTCCTATATTCCTCCCCTACCATCC
CCATTGTTATTCTCCGTCCGTGGTTTCCTTCCCAACCACAGAAGTTCACA
GACTTGACGTGTATTATCCGCCACTTTCAGGATCCATCCCTGCTACACCT
CATTGGAGGGGCACCCCCCCCCACCCTTCCCTTTCCCCTCTCTCTACCGC
TTTTCCACAAATTGATACATGGGCACCTGCTGCCTACTATCCATCCCTCC
TCCCCCCCTCCTCCTTCCTCTGCCTCCTCCCCTTCCTCCTTCCTGCTGCG
CCACCGTCGACTCTGGGAAAGACGGAGTATCCAAAAAAGCAAAGGAAGAC
ATCATCCCTC back to topprotein sequence of jgi.p|Nanoce1779_2|600115 >mRNA_7811-protein ID=mRNA_7811-protein|Name=jgi.p|Nanoce1779_2|600115|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MASQLLARALRRVAVTASSSSSASLLRPAVSQATVSFSSGGSNKPAPLED
PKTSFSEVLDRATNIFFLTELLRGFWLSFEVAMKPKVTINYPFEKGHLSP
RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEADQRADGSRKTTRY
DIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGD
KWEVAIARNLAAEHLYR* back to topmRNA from alignment at scaffold_21:385725..387234- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7811 ID=mRNA_7811|Name=jgi.p|Nanoce1779_2|600115|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp|location=Sequence derived from alignment at scaffold_21:385725..387234- (Nannochloropsis oceanica)
CAGGCATGGCTTCGCAGCTCCTGGCCCGTGCGTTGCGACGTGTGGCTGTG
ACCGCTTCCTCGTCCTCGTCTGCCTCCCTCCTGCGCCCCGCCGTCTCCCA
AGCCACTGTCTCCTTCAGCAGCGGCGGGAGCAACAAACCCGCTCCTTTGG
AAGATCCCAAGACGAGTTTCTCGGAGGTTCTGGACCGGGCGACCAACATC
TTTTTCTTGACGGAGTTATTGCGAGGGTTTTGGTTGTCGTTCGAAGTGGC
GATGAAGCCCAAGGTCACAATCAACTACCCTTTTGAGAAGGGGCACCTCT
CCCCGCGTTTCCGAGGGGAGCATGCCTTGCGCCGGTATCCGAATGGGGAG
GAACGTTGTATTGCGTGTAAGTTGTGCGAAGCGATTTGCCCCGCCCAGGC
TATCACGATTGAAGCGGACCAGCGGGCGGATGGATCGAGGAAGACGACAA
GGTACGACATTGATATGACCAAGTGCATTTTTTGTGGGTTTTGCCAGGAA
GCGTGCCCCGTGGATGCGATTGTGGAGGGGCCAAATTTTGAATTTGCGAC
GGAGACTCACGAAGAATTGTTGTATGATAAGGAGAAGTTGCTCGCCAACG
GGGATAAATGGGAGGTGGCTATCGCGAGGAATCTGGCCGCGGAGCACTTG
TACCGGTGAGAATCCAATTATGAGTAGGAGATCGGTATGTAATCATGATG
CGATGGGGAGGGAAGAATGATGACTAAAGGGGAAGGTTACCATGATCTGA
TGGCGGAATGATCGGACCAATGTGGGCGGGAAGTGAGGAAATGAAGGATG
AGGTATGTAGAGATGCGGAGGGTGGATCAAAGATGCGCTTGGGCATTGAA
TGAAGAATGTTAGGGATAACGTAAGAGAGGCAGAGAGACAAACGTGGAGA
GAGAGGGAAAGATATGGTATTTTATCCAATGGAAATCATGTACTCGCGAG
AAGCAAACTTGACGAGAGAAAAAGAAGGAGAAAGGGAGAGAGGGTGGGAG
GAGCCATTCCCGCTTCGATGCTCCTCTACACTGTTTTTCATTGCATGCAT
GCATGGTTGCGTGCTGTCCCTCTTTCTCATATTATATACGTCCTTTGTAA
AAAAAAACTAATTCGTCTTTCCAAGGGACGTCTACCAAACTTCCTTCCCC
ATCCTCTGTCTCCTCTACCTCCTCGTTCCTATATTCCTCCCCTACCATCC
CCATTGTTATTCTCCGTCCGTGGTTTCCTTCCCAACCACAGAAGTTCACA
GACTTGACGTGTATTATCCGCCACTTTCAGGATCCATCCCTGCTACACCT
CATTGGAGGGGCACCCCCCCCCACCCTTCCCTTTCCCCTCTCTCTACCGC
TTTTCCACAAATTGATACATGGGCACCTGCTGCCTACTATCCATCCCTCC
TCCCCCCCTCCTCCTTCCTCTGCCTCCTCCCCTTCCTCCTTCCTGCTGCG
CCACCGTCGACTCTGGGAAAGACGGAGTATCCAAAAAAGCAAAGGAAGAC
ATCATCCCTC back to topCoding sequence (CDS) from alignment at scaffold_21:385725..387234- >mRNA_7811 ID=mRNA_7811|Name=jgi.p|Nanoce1779_2|600115|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_21:385725..387234- (Nannochloropsis oceanica)
ATGGCTTCGCAGCTCCTGGCCCGTGCGTTGCGACGTGTGGCTGTGACCGC
TTCCTCGTCCTCGTCTGCCTCCCTCCTGCGCCCCGCCGTCTCCCAAGCCA
CTGTCTCCTTCAGCAGCGGCGGGAGCAACAAACCCGCTCCTTTGGAAGAT
CCCAAGACGAGTTTCTCGGAGGTTCTGGACCGGGCGACCAACATCTTTTT
CTTGACGGAGTTATTGCGAGGGTTTTGGTTGTCGTTCGAAGTGGCGATGA
AGCCCAAGGTCACAATCAACTACCCTTTTGAGAAGGGGCACCTCTCCCCG
CGTTTCCGAGGGGAGCATGCCTTGCGCCGGTATCCGAATGGGGAGGAACG
TTGTATTGCGTGTAAGTTGTGCGAAGCGATTTGCCCCGCCCAGGCTATCA
CGATTGAAGCGGACCAGCGGGCGGATGGATCGAGGAAGACGACAAGGTAC
GACATTGATATGACCAAGTGCATTTTTTGTGGGTTTTGCCAGGAAGCGTG
CCCCGTGGATGCGATTGTGGAGGGGCCAAATTTTGAATTTGCGACGGAGA
CTCACGAAGAATTGTTGTATGATAAGGAGAAGTTGCTCGCCAACGGGGAT
AAATGGGAGGTGGCTATCGCGAGGAATCTGGCCGCGGAGCACTTGTACCG
GTGA back to top
|