jgi.p|Nanoce1779_2|169853, mRNA_7810 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|169853
Unique Name	mRNA_7810
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1750
Alignment location	scaffold_21:383314..386367 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	169939
Track	FilteredModels2
ProteinId	169853

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:383314..386367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|169853	gene_7810	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|169853	mRNA_7810-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7810	CDS_7810	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:383314..386367+
coding sequence from alignment at scaffold_21:383314..386367+

mRNA sequence

>mRNA_7810 ID=mRNA_7810|Name=jgi.p|Nanoce1779_2|169853|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp
AGACCCGTCCTCCTTCCCACCCTCCTCCTCTTTCTCCTCCTCTTACTCCT
CCGTGCATCAACAGCAGCAGCAGCAACACCACCACCATCACCAGCAGCAG
CAACAACACTACCACCCCCAGCAGCAACAACACTACCACCCCCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGGCAACAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGACAGCAGCAGCAGCAGCAGCAGCAGCG
GCAACAGCAACAACCAGAACAACAGCAGCTGTCTACTTTCAATTTCATGG
TAAACAACAACAGCAACAACAGCCACAACAGCGAGTCCCTCAAGCTGCTC
CCCCTGTTGACGATCCAGCACGCCATTGCCCAATCCATCGAACTCGCCCA
CCGAGCATGCGCACATTCACCCACCGACGCCCATGACGTGAAACGGTCGG
CGGTCCTCTGTCGCTCCCAACTCATATACACCATTAAGCTCCTGAAATCG
ATTGAGCAGACAGCCGCCTCTGTCCTCGAAATGTTTCCGGACCTGGAGCT
GGCTATAGAAGACGATGAACCGGCCCTGGCGCAGGACTTTTTCGAGACTG
TGAAGAAATGGGTGGGGGATCTGAGGCGTACCGTCGGGAAAGCTCAGCAC
CGCAATCAAGAGAGCATCTTTAAATTGCACAATATTTTGGTGAAAGGAGG
GGAGATGGAAGAGGAGGAGGACGTGGAGGAGGGGGAGGAGGATGGGAGGG
AGAGGGAGGGAGGGAGGGAGGGAGGGATGTATATGGGGGGGGCACGTATT
GAAAGTGTTTCATCGAGCTCGTTGTCGGTGGCGGGGATGGAGGTAGGGAG
GGAGGTAGCGAGAGAGGGTTCTATTTCATCAGCGTTGCAGCAGGAAGAAG
AAAAGTCGAAAAGTGCGGGCACAAGCAATTCCGCTACCAACCACCTCTAC
CATCTGCCGCCGCCACAGCAGCAACAACAGCAGCAACAAAAACAACAGCA
GCAACAACAACAACAACAGCCGCACCAACAGCAGCAGCAGCAGCAAGGAG
GACCAAAACAACAGAAACGCGTCTCCCGCATTCGCAGCCGTGATGACCGT
GACAGAGAATCCGGGCCTCTCCCACACAAGCAACCGCACCCCTCTGTCCC
CTCCGTCCCAAAAGAAGGAGGACACGTCACCCGGCGCAACGACTCCACCT
CCTCCTCTTCCTCCACCCTCTCCTCCTCGTCATCCACCTCGTCTTCCTCC
TCGTCTTCCTCCTCGTCCACGGTGGAACGTCAAAAGGAGGCCGGGCTCTT
GTCCCTTGACCCGGAGCTCTACCAGGCCGTAAAAAAACTGAAGGAGGCGA
CGGACAGCGACGTGAAACTATCCGAGACTCAACTGCTCGATTTGTTCTTT
TCCGTCAATGGCAGCAACCACCTGCTGCGGCAGCAGCAGCAGCAGGGAGG
TAGAGGAGACAGAGGATGGGGAAGGAAGTTTGGTAGACGTCCCTTGGAAA
GACGAATTAGTTTTTTTTTACAAAGGACGTATATAATATGAGAAAGAGGG
ACAGCACGCAACCATGCATGCATGCAATGAAAAACAGTGTAGAGGAGCAT
CGAAGCGGGAATGGCTCCTCCCACCCTCTCTCCCTTTCTCCTTCTTTTTC
TCTCGTCAAGTTTGCTTCTCGCGAGTACATGATTTCCATTGGATAAAATA
CCATATCTTTCCCTCTCTCTCCACGTTTGTCTCTCTGCCTCTCTTACGTT

protein sequence of jgi.p|Nanoce1779_2|169853

>mRNA_7810-protein ID=mRNA_7810-protein|Name=jgi.p|Nanoce1779_2|169853|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MVNNNSNNSHNSESLKLLPLLTIQHAIAQSIELAHRACAHSPTDAHDVKR
SAVLCRSQLIYTIKLLKSIEQTAASVLEMFPDLELAIEDDEPALAQDFFE
TVKKWVGDLRRTVGKAQHRNQESIFKLHNILVKGGEMEEEEDVEEGEEDG
REREGGREGGMYMGGARIESVSSSSLSVAGMEVGREVAREGSISSALQQE
EEKSKSAGTSNSATNHLYHLPPPQQQQQQQQKQQQQQQQQQPHQQQQQQQ
GGPKQQKRVSRIRSRDDRDRESGPLPHKQPHPSVPSVPKEGGHVTRRNDS
TSSSSSTLSSSSSTSSSSSSSSSSTVERQKEAGLLSLDPELYQAVKKLKE
ATDSDVKLSETQLLDLFFSVNGSNHLLRQQQQQGGRGDRGWGRKFGRRPL
ERRISFFLQRTYII*

mRNA from alignment at scaffold_21:383314..386367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7810 ID=mRNA_7810|Name=jgi.p|Nanoce1779_2|169853|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp|location=Sequence derived from alignment at scaffold_21:383314..386367+ (Nannochloropsis oceanica)
AGACCCGTCCTCCTTCCCACCCTCCTCCTCTTTCTCCTCCTCTTACTCCT
CCGTGCATCAACAGCAGCAGCAGCAACACCACCACCATCACCAGCAGCAG
CAACAACACTACCACCCCCAGCAGCAACAACACTACCACCCCCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGGCAACAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGAGCTCGGGTCTCCTTTCTCTTCTTTCT
CCCCCAATTCTTCCCACCACCACAGCCCTTTCAAACCCGTCCTACTACTA
CCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAACAGCAACAACCAGAACAACAGCAGCTGTCTACTTTC
AATTTCATGGTAAACAACAACAGCAACAACAGCCACAACAGCGAGTCCCT
CAAGCTGCTCCCCCTGTTGACGATCCAGCACGCCATTGCCCAATCCATCG
AACTCGCCCACCGAGCATGCGCACATTCACCCACCGACGCCCATGACGTG
AAACGGTCGGCGGTCCTCTGTCGCTCCCAACTCATATACACCATTAAGCT
CCTGAAATCGATTGAGCAGACAGGTAGGGAGGGAAGGAGGAAAGGAGGGA
GTGGTGGGACTGGCCGTGAAAGGCGAAAAGTCTCCCTTGGCGTGGAGGCC
AAACCTTTGAAACGCGAGCGGGGGAGATGAAAGATTTGCAAGCTACTGAC
CTCTTCCTCCCTCCTTTCTTCCCTCCCTCCCTCCTTCCCTTCCTAACCCC
GTTAGCCGCCTCTGTCCTCGAAATGTTTCCGGACCTGGAGCTGGCTATAG
AAGACGATGAACCGGCCCTGGCGCAGGACTTTTTCGAGACTGTGAAGAAA
TGGGTGGGGGATCTGAGGCGTACCGTCGGGAAAGCTCAGCACCGCAATCA
AGAGAGCATCTTTAAATTGCACAATATTTTGGTGAAAGGAGGGGAGATGG
AAGAGGAGGAGGACGTGGAGGAGGGGGAGGAGGATGGGAGGGAGAGGGAG
GGAGGGAGGGAGGGAGGGATGTATATGGGGGGGGCACGTATTGAAAGTGT
TTCATCGAGCTCGTTGTCGGTGGCGGGGATGGAGGTAGGGAGGGAGGTAG
CGAGAGAGGGTTCTATTTCATCAGCGTTGCAGCAGGAAGAAGAAAAGTCG
AAAAGTGCGGGCACAAGCAATTCCGCTACCAACCACCTCTACCATCTGCC
GCCGCCACAGCAGCAACAACAGCAGCAACAAAAACAACAGCAGCAACAAC
AACAACAACAGCCGCACCAACAGCAGCAGCAGCAGCAAGGAGGACCAAAA
CAACAGAAACGCGTCTCCCGCATTCGCAGCCGTGATGACCGTGACAGAGA
ATCCGGGCCTCTCCCACACAAGCAACCGCACCCCTCTGTCCCCTCCGTCC
CAAAAGAAGGAGGACACGTCACCCGGCGCAACGACTCCACCTCCTCCTCT
TCCTCCACCCTCTCCTCCTCGTCATCCACCTCGTCTTCCTCCTCGTCTTC
CTCCTCGTCCACGGTGGAACGTCAAAAGGAGGCCGGGCTCTTGTCCCTTG
ACCCGGAGCTCTACCAGGCCGTAAAAAAACTGAAGGAGGCGACGGACAGC
GACGTGAAACTATCCGAGACTCAACTGCTCGATTTGTTCTTTTCCGTCAA
TGGCAGCAACCACCTGCTGCGGCAGCAGCAGCAGCAGGGGAAGGGGAAGG
GCGAAGGGGTGTTGGAGGAAGTGAAGGCGGGAAGGAAACTAGGCTCTGGT
CCGGCGGGAAGAGGAACTATTGTGGATGGCGGGGAAAGAGGAAGCGAAGG
AGGAAAGGAAGGGGGAAGGGATGGTGCTGTGGACCCTCTGGCAATGGACA
CCAGCTTCGGCCGTGCCCCTAGTCAGATGTACACAACAATGGCTGTCGAC
CCCCCCCCCCACTCCCTCCCAACGTTCCTTCCAATCCGTCCGCCCTCTCT
CCCCCAGCCCTAAATCTCGAGAGCTCTCCTTAGTGCTGGCGAAGCTGCGG
GACGTGGATGAAATATTGGAGCACCTCGCCATCTTCTGGGCACAGACAGA
AGTCATTCTGGAAGCGCTGTTGCAGAAATCCGAACACGTGGAACGTTTTG
TGGGGTACTCGCACAAACCGCGGTTGAAGGACCGATTCGTAGCGAGGTTG
GGCGAGTATCGGATGTTTTGGGTGGGGGTGCAGGGCATGTGCCGCCAGTT
TACCACGGCTGTCTTTGCTGCTCCTGCTGCTCCTGCTGCTGCTACCGGTG
CCGCTGCTGCTCCCGGTACTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCT
GATTCGTCGGCGGCGACTGCGGCGATGATGGGTAGGTATGGAAGCGGTGG
AGGGATTGGGGGAGGGATGATGTCTTCCTTTGCTTTTTTGGATACTCCGT
CTTTCCCAGAGTCGACGGTGGCGCAGCAGGAAGGAGGAAGGGGAGGAGGC
AGAGGAAGGAGGAGGGGGGGAGGAGGGATGGATAGTAGGCAGCAGGTGCC
CATGTATCAATTTGTGGAAAAGCGGTAGAGAGAGGGGAAAGGGAAGGGTG
GGGGGGGGTGCCCCTCCAATGAGGTGTAGCAGGGATGGATCCTGAAAGTG
GCGGATAATACACGTCAAGTCTGTGAACTTCTGTGGTTGGGAAGGAAACC
ACGGACGGAGAATAACAATGGGGATGGTAGGGGAGGAATATAGGAACGAG
GAGGTAGAGGAGACAGAGGATGGGGAAGGAAGTTTGGTAGACGTCCCTTG
GAAAGACGAATTAGTTTTTTTTTACAAAGGACGTATATAATATGAGAAAG
AGGGACAGCACGCAACCATGCATGCATGCAATGAAAAACAGTGTAGAGGA
GCATCGAAGCGGGAATGGCTCCTCCCACCCTCTCTCCCTTTCTCCTTCTT
TTTCTCTCGTCAAGTTTGCTTCTCGCGAGTACATGATTTCCATTGGATAA
AATACCATATCTTTCCCTCTCTCTCCACGTTTGTCTCTCTGCCTCTCTTA
CGTT

Coding sequence (CDS) from alignment at scaffold_21:383314..386367+

>mRNA_7810 ID=mRNA_7810|Name=jgi.p|Nanoce1779_2|169853|organism=Nannochloropsis oceanica|type=CDS|length=3735bp|location=Sequence derived from alignment at scaffold_21:383314..386367+ (Nannochloropsis oceanica)
ATGGTAAACAACAACAGCAACAACAGCCACAACAGCGAGTCCCTCAAGCT
GCTCCCCCTGTTGACGATCCAGCACGCCATTGCCCAATCCATCGAACTCG
CCCACCGAGCATGCGCACATTCACCCACCGACGCCCATGACGTGAAACGG
TCGGCGGTCCTCTGTCGCTCCCAACTCATATACACCATTAAGCTCCTGAA
ATCGATTGAGCAGACAGCCGCCTCTGTCCTCGAAATGTTTCCGGACCTGG
AGCTGGCTATAGAAGACGATGAACCGGCCCTGGCGCAGGACTTTTTCGAG
ACTGTGAAGAAATGGGTGGGGGATCTGAGGCGTACCGTCGGGAAAGCTCA
GCACCGCAATCAAGAGAGCATCTTTAAATTGCACAATATTTTGGTGAAAG
GAGGGGAGATGGAAGAGGAGGAGGACGTGGAGGAGGGGGAGGAGGATGGG
AGGGAGAGGGAGGGAGGGAGGGAGGGAGGGATGTATATGGGGGGGGCACG
TATTGAAAGTGTTTCATCGAGCTCGTTGTCGGTGGCGGGGATGGAGGTAG
GGAGGGAGGTAGCGAGAGAGGGTTCTATTTCATCAGCGTTGCAGCAGGAA
GAAGAAAAGTCGAAAAGTGCGGGCACAAGCAATTCCGCTACCAACCACCT
CTACCATCTGCCGCCGCCACAGCAGCAACAACAGCAGCAACAAAAACAAC
AGCAGCAACAACAACAACAACAGCCGCACCAACAGCAGCAGCAGCAGCAA
GGAGGACCAAAACAACAGAAACGCGTCTCCCGCATTCGCAGCCGTGATGA
CCGTGACAGAGAATCCGGGCCTCTCCCACACAAGCAACCGCACCCCTCTG
TCCCCTCCGTCCCAAAAGAAGGAGGACACGTCACCCGGCGCAACGACTCC
ACCTCCTCCTCTTCCTCCACCCTCTCCTCCTCGTCATCCACCTCGTCTTC
CTCCTCGTCTTCCTCCTCGTCCACGGTGGAACGTCAAAAGGAGGCCGGGC
TCTTGTCCCTTGACCCGGAGCTCTACCAGGCCGTAAAAAAACTGAAGGAG
GCGACGGACAGCGACGTGAAACTATCCGAGACTCAACTGCTCGATTTGTT
CTTTTCCGTCAATGGCAGCAACCACCTGCTGCGGCAGCAGCAGCAGCAGG
GAGGTAGAGGAGACAGAGGATGGGGAAGGAAGTTTGGTAGACGTCCCTTG
GAAAGACGAATTAGTTTTTTTTTACAAAGGACGTATATAATATGAATGGT
AAACAACAACAGCAACAACAGCCACAACAGCGAGTCCCTCAAGCTGCTCC
CCCTGTTGACGATCCAGCACGCCATTGCCCAATCCATCGAACTCGCCCAC
CGAGCATGCGCACATTCACCCACCGACGCCCATGACGTGAAACGGTCGGC
GGTCCTCTGTCGCTCCCAACTCATATACACCATTAAGCTCCTGAAATCGA
TTGAGCAGACAGCCGCCTCTGTCCTCGAAATGTTTCCGGACCTGGAGCTG
GCTATAGAAGACGATGAACCGGCCCTGGCGCAGGACTTTTTCGAGACTGT
GAAGAAATGGGTGGGGGATCTGAGGCGTACCGTCGGGAAAGCTCAGCACC
GCAATCAAGAGAGCATCTTTAAATTGCACAATATTTTGGTGAAAGGAGGG
GAGATGGAAGAGGAGGAGGACGTGGAGGAGGGGGAGGAGGATGGGAGGGA
GAGGGAGGGAGGGAGGGAGGGAGGGATGTATATGGGGGGGGCACGTATTG
AAAGTGTTTCATCGAGCTCGTTGTCGGTGGCGGGGATGGAGGTAGGGAGG
GAGGTAGCGAGAGAGGGTTCTATTTCATCAGCGTTGCAGCAGGAAGAAGA
AAAGTCGAAAAGTGCGGGCACAAGCAATTCCGCTACCAACCACCTCTACC
ATCTGCCGCCGCCACAGCAGCAACAACAGCAGCAACAAAAACAACAGCAG
CAACAACAACAACAACAGCCGCACCAACAGCAGCAGCAGCAGCAAGGAGG
ACCAAAACAACAGAAACGCGTCTCCCGCATTCGCAGCCGTGATGACCGTG
ACAGAGAATCCGGGCCTCTCCCACACAAGCAACCGCACCCCTCTGTCCCC
TCCGTCCCAAAAGAAGGAGGACACGTCACCCGGCGCAACGACTCCACCTC
CTCCTCTTCCTCCACCCTCTCCTCCTCGTCATCCACCTCGTCTTCCTCCT
CGTCTTCCTCCTCGTCCACGGTGGAACGTCAAAAGGAGGCCGGGCTCTTG
TCCCTTGACCCGGAGCTCTACCAGGCCGTAAAAAAACTGAAGGAGGCGAC
GGACAGCGACGTGAAACTATCCGAGACTCAACTGCTCGATTTGTTCTTTT
CCGTCAATGGCAGCAACCACCTGCTGCGGCAGCAGCAGCAGCAGGGAGGT
AGAGGAGACAGAGGATGGGGAAGGAAGTTTGGTAGACGTCCCTTGGAAAG
ACGAATTAGTTTTTTTTTACAAAGGACGTATATAATATGAATGGTAAACA
ACAACAGCAACAACAGCCACAACAGCGAGTCCCTCAAGCTGCTCCCCCTG
TTGACGATCCAGCACGCCATTGCCCAATCCATCGAACTCGCCCACCGAGC
ATGCGCACATTCACCCACCGACGCCCATGACGTGAAACGGTCGGCGGTCC
TCTGTCGCTCCCAACTCATATACACCATTAAGCTCCTGAAATCGATTGAG
CAGACAGCCGCCTCTGTCCTCGAAATGTTTCCGGACCTGGAGCTGGCTAT
AGAAGACGATGAACCGGCCCTGGCGCAGGACTTTTTCGAGACTGTGAAGA
AATGGGTGGGGGATCTGAGGCGTACCGTCGGGAAAGCTCAGCACCGCAAT
CAAGAGAGCATCTTTAAATTGCACAATATTTTGGTGAAAGGAGGGGAGAT
GGAAGAGGAGGAGGACGTGGAGGAGGGGGAGGAGGATGGGAGGGAGAGGG
AGGGAGGGAGGGAGGGAGGGATGTATATGGGGGGGGCACGTATTGAAAGT
GTTTCATCGAGCTCGTTGTCGGTGGCGGGGATGGAGGTAGGGAGGGAGGT
AGCGAGAGAGGGTTCTATTTCATCAGCGTTGCAGCAGGAAGAAGAAAAGT
CGAAAAGTGCGGGCACAAGCAATTCCGCTACCAACCACCTCTACCATCTG
CCGCCGCCACAGCAGCAACAACAGCAGCAACAAAAACAACAGCAGCAACA
ACAACAACAACAGCCGCACCAACAGCAGCAGCAGCAGCAAGGAGGACCAA
AACAACAGAAACGCGTCTCCCGCATTCGCAGCCGTGATGACCGTGACAGA
GAATCCGGGCCTCTCCCACACAAGCAACCGCACCCCTCTGTCCCCTCCGT
CCCAAAAGAAGGAGGACACGTCACCCGGCGCAACGACTCCACCTCCTCCT
CTTCCTCCACCCTCTCCTCCTCGTCATCCACCTCGTCTTCCTCCTCGTCT
TCCTCCTCGTCCACGGTGGAACGTCAAAAGGAGGCCGGGCTCTTGTCCCT
TGACCCGGAGCTCTACCAGGCCGTAAAAAAACTGAAGGAGGCGACGGACA
GCGACGTGAAACTATCCGAGACTCAACTGCTCGATTTGTTCTTTTCCGTC
AATGGCAGCAACCACCTGCTGCGGCAGCAGCAGCAGCAGGGAGGTAGAGG
AGACAGAGGATGGGGAAGGAAGTTTGGTAGACGTCCCTTGGAAAGACGAA
TTAGTTTTTTTTTACAAAGGACGTATATAATATGA

Synonyms

Publications